data_8DQT # _model_server_result.job_id ifbpO8gDgz1H8tI4xgmpyw _model_server_result.datetime_utc '2024-11-15 09:40:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8DQT # _exptl.entry_id 8DQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.32 _cell.angle_gamma 90 _cell.entry_id 8DQT _cell.length_a 148.51 _cell.length_b 44.59 _cell.length_c 48.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 192 A ASN 240 1_555 A N SEP 193 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 193 A SEP 241 1_555 A N PHE 194 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8DQT _atom_sites.fract_transf_matrix[1][1] 0.006734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001348 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U35 A 1 401 401 U35 U35 . C 2 U35 A 1 402 402 U35 U35 . D 2 U35 A 1 403 403 U35 U35 . E 3 GOL A 1 404 404 GOL GOL . F 4 HOH A 1 501 501 HOH HOH . F 4 HOH A 2 502 502 HOH HOH . F 4 HOH A 3 503 503 HOH HOH . F 4 HOH A 4 504 504 HOH HOH . F 4 HOH A 5 505 505 HOH HOH . F 4 HOH A 6 506 506 HOH HOH . F 4 HOH A 7 507 507 HOH HOH . F 4 HOH A 8 508 508 HOH HOH . F 4 HOH A 9 509 509 HOH HOH . F 4 HOH A 10 510 510 HOH HOH . F 4 HOH A 11 511 511 HOH HOH . F 4 HOH A 12 512 512 HOH HOH . F 4 HOH A 13 513 513 HOH HOH . F 4 HOH A 14 514 514 HOH HOH . F 4 HOH A 15 515 515 HOH HOH . F 4 HOH A 16 516 516 HOH HOH . F 4 HOH A 17 517 517 HOH HOH . F 4 HOH A 18 518 518 HOH HOH . F 4 HOH A 19 519 519 HOH HOH . F 4 HOH A 20 520 520 HOH HOH . F 4 HOH A 21 521 521 HOH HOH . F 4 HOH A 22 522 522 HOH HOH . F 4 HOH A 23 523 523 HOH HOH . F 4 HOH A 24 524 524 HOH HOH . F 4 HOH A 25 525 525 HOH HOH . F 4 HOH A 26 526 526 HOH HOH . F 4 HOH A 27 527 527 HOH HOH . F 4 HOH A 28 528 528 HOH HOH . F 4 HOH A 29 529 529 HOH HOH . F 4 HOH A 30 530 530 HOH HOH . F 4 HOH A 31 531 531 HOH HOH . F 4 HOH A 32 532 532 HOH HOH . F 4 HOH A 33 533 533 HOH HOH . F 4 HOH A 34 534 534 HOH HOH . F 4 HOH A 35 535 535 HOH HOH . F 4 HOH A 36 536 536 HOH HOH . F 4 HOH A 37 537 537 HOH HOH . F 4 HOH A 38 538 538 HOH HOH . F 4 HOH A 39 539 539 HOH HOH . F 4 HOH A 40 540 540 HOH HOH . F 4 HOH A 41 541 541 HOH HOH . F 4 HOH A 42 542 542 HOH HOH . F 4 HOH A 43 543 543 HOH HOH . F 4 HOH A 44 544 544 HOH HOH . F 4 HOH A 45 545 545 HOH HOH . F 4 HOH A 46 546 546 HOH HOH . F 4 HOH A 47 547 547 HOH HOH . F 4 HOH A 48 548 548 HOH HOH . F 4 HOH A 49 549 549 HOH HOH . F 4 HOH A 50 550 550 HOH HOH . F 4 HOH A 51 551 551 HOH HOH . F 4 HOH A 52 552 552 HOH HOH . F 4 HOH A 53 553 553 HOH HOH . F 4 HOH A 54 554 554 HOH HOH . F 4 HOH A 55 555 555 HOH HOH . F 4 HOH A 56 556 556 HOH HOH . F 4 HOH A 57 557 557 HOH HOH . F 4 HOH A 58 558 558 HOH HOH . F 4 HOH A 59 559 559 HOH HOH . F 4 HOH A 60 560 560 HOH HOH . F 4 HOH A 61 561 561 HOH HOH . F 4 HOH A 62 562 562 HOH HOH . F 4 HOH A 63 563 563 HOH HOH . F 4 HOH A 64 564 564 HOH HOH . F 4 HOH A 65 565 565 HOH HOH . F 4 HOH A 66 566 566 HOH HOH . F 4 HOH A 67 567 567 HOH HOH . F 4 HOH A 68 568 568 HOH HOH . F 4 HOH A 69 569 569 HOH HOH . F 4 HOH A 70 570 570 HOH HOH . F 4 HOH A 71 571 571 HOH HOH . F 4 HOH A 72 572 572 HOH HOH . F 4 HOH A 73 573 573 HOH HOH . F 4 HOH A 74 574 574 HOH HOH . F 4 HOH A 75 575 575 HOH HOH . F 4 HOH A 76 576 576 HOH HOH . F 4 HOH A 77 577 577 HOH HOH . F 4 HOH A 78 578 578 HOH HOH . F 4 HOH A 79 579 579 HOH HOH . F 4 HOH A 80 580 580 HOH HOH . F 4 HOH A 81 581 581 HOH HOH . F 4 HOH A 82 582 582 HOH HOH . F 4 HOH A 83 583 583 HOH HOH . F 4 HOH A 84 584 584 HOH HOH . F 4 HOH A 85 585 585 HOH HOH . F 4 HOH A 86 586 586 HOH HOH . F 4 HOH A 87 587 587 HOH HOH . F 4 HOH A 88 588 588 HOH HOH . F 4 HOH A 89 589 589 HOH HOH . F 4 HOH A 90 590 590 HOH HOH . F 4 HOH A 91 591 591 HOH HOH . F 4 HOH A 92 592 592 HOH HOH . F 4 HOH A 93 593 593 HOH HOH . F 4 HOH A 94 594 594 HOH HOH . F 4 HOH A 95 595 595 HOH HOH . F 4 HOH A 96 596 596 HOH HOH . F 4 HOH A 97 597 597 HOH HOH . F 4 HOH A 98 598 598 HOH HOH . F 4 HOH A 99 599 599 HOH HOH . F 4 HOH A 100 600 600 HOH HOH . F 4 HOH A 101 601 601 HOH HOH . F 4 HOH A 102 602 602 HOH HOH . F 4 HOH A 103 603 603 HOH HOH . F 4 HOH A 104 604 604 HOH HOH . F 4 HOH A 105 605 605 HOH HOH . F 4 HOH A 106 606 606 HOH HOH . F 4 HOH A 107 607 607 HOH HOH . F 4 HOH A 108 608 608 HOH HOH . F 4 HOH A 109 609 609 HOH HOH . F 4 HOH A 110 610 610 HOH HOH . F 4 HOH A 111 611 611 HOH HOH . F 4 HOH A 112 612 612 HOH HOH . F 4 HOH A 113 613 613 HOH HOH . F 4 HOH A 114 614 614 HOH HOH . F 4 HOH A 115 615 615 HOH HOH . F 4 HOH A 116 616 616 HOH HOH . F 4 HOH A 117 617 617 HOH HOH . F 4 HOH A 118 618 618 HOH HOH . F 4 HOH A 119 619 619 HOH HOH . F 4 HOH A 120 620 620 HOH HOH . F 4 HOH A 121 621 621 HOH HOH . F 4 HOH A 122 622 622 HOH HOH . F 4 HOH A 123 623 623 HOH HOH . F 4 HOH A 124 624 624 HOH HOH . F 4 HOH A 125 625 625 HOH HOH . F 4 HOH A 126 626 626 HOH HOH . F 4 HOH A 127 627 627 HOH HOH . F 4 HOH A 128 628 628 HOH HOH . F 4 HOH A 129 629 629 HOH HOH . F 4 HOH A 130 630 630 HOH HOH . F 4 HOH A 131 631 631 HOH HOH . F 4 HOH A 132 632 632 HOH HOH . F 4 HOH A 133 633 633 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 14.567 -26.488 -36.534 1 29.62 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 3 13.764 -25.337 -36.57 1 31.18 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 3 13.59 -27.702 -36.567 1 24.68 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 3 14.225 -28.905 -36.926 1 24.7 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 3 13.029 -27.821 -35.115 1 26.04 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 3 12.155 -28.949 -35.079 1 23.75 ? O3 GOL 404 A 1 HETATM 7 H H11 GOL . . . E 3 15.179 -26.543 -37.285 1 35.54 ? H11 GOL 404 A 1 HETATM 8 H H12 GOL . . . E 3 15.118 -26.537 -35.738 1 35.54 ? H12 GOL 404 A 1 HETATM 9 H HO1 GOL . . . E 3 13.028 -25.539 -36.192 1 37.42 ? HO1 GOL 404 A 1 HETATM 10 H H2 GOL . . . E 3 12.899 -27.53 -37.226 1 29.62 ? H2 GOL 404 A 1 HETATM 11 H HO2 GOL . . . E 3 14.979 -28.928 -36.534 1 29.64 ? HO2 GOL 404 A 1 HETATM 12 H H31 GOL . . . E 3 13.775 -27.895 -34.5 1 31.25 ? H31 GOL 404 A 1 HETATM 13 H H32 GOL . . . E 3 12.588 -26.988 -34.884 1 31.25 ? H32 GOL 404 A 1 HETATM 14 H HO3 GOL . . . E 3 11.938 -29.066 -34.271 1 28.5 ? HO3 GOL 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #