data_8DR8 # _model_server_result.job_id E5sYtfQVxz6YlUBkKkqMmQ _model_server_result.datetime_utc '2024-10-15 11:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":904}' # _entry.id 8DR8 # _exptl.entry_id 8DR8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DR8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 402 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 205 A CYS 113 1_555 A SG CYS 387 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 54 B CYS 54 1_555 B SG CYS 402 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 B SG CYS 57 B CYS 57 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 205 B CYS 113 1_555 B SG CYS 387 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 C SG CYS 54 C CYS 54 1_555 C SG CYS 402 C CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 C SG CYS 57 C CYS 57 1_555 C SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 C SG CYS 205 C CYS 113 1_555 C SG CYS 387 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 D SG CYS 54 D CYS 54 1_555 D SG CYS 402 D CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 D SG CYS 57 D CYS 57 1_555 D SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 D SG CYS 205 D CYS 113 1_555 D SG CYS 387 D CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 E SG CYS 54 E CYS 54 1_555 E SG CYS 402 E CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 E SG CYS 57 E CYS 57 1_555 E SG CYS 65 E CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 E SG CYS 205 E CYS 113 1_555 E SG CYS 387 E CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf16 F SG CYS 54 F CYS 54 1_555 F SG CYS 308 F CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 F SG CYS 115 F CYS 115 1_555 F SG CYS 293 F CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 8DR8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 PEE A 1 901 901 PEE PEE . H 3 PEE A 1 902 902 PEE PEE . I 3 PEE A 1 903 903 PEE PEE . J 3 PEE B 1 901 901 PEE PEE . K 3 PEE B 1 902 902 PEE PEE . L 3 PEE B 1 903 903 PEE PEE . M 3 PEE B 1 904 901 PEE PEE . N 3 PEE C 1 901 901 PEE PEE . O 3 PEE C 1 902 902 PEE PEE . P 3 PEE D 1 901 901 PEE PEE . Q 3 PEE D 1 902 902 PEE PEE . R 3 PEE D 1 903 903 PEE PEE . S 3 PEE D 1 904 903 PEE PEE . T 3 PEE E 1 901 901 PEE PEE . U 3 PEE E 1 902 902 PEE PEE . V 3 PEE E 1 903 903 PEE PEE . W 3 PEE F 1 901 901 PEE PEE . X 3 PEE F 1 902 902 PEE PEE . Y 3 PEE F 1 903 903 PEE PEE . Z 3 PEE F 1 904 902 PEE PEE . AA 4 HOH A 1 1001 1 HOH HOH . BA 4 HOH B 1 1001 4 HOH HOH . CA 4 HOH C 1 1001 5 HOH HOH . DA 4 HOH D 1 1001 6 HOH HOH . EA 4 HOH E 1 1001 3 HOH HOH . FA 4 HOH F 1 1001 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . S 3 208.667 226.93 184.075 1 99.57 ? C27 PEE 904 D 1 HETATM 2 C C26 PEE . . . S 3 208.511 225.963 185.23 1 95.13 ? C26 PEE 904 D 1 HETATM 3 C C25 PEE . . . S 3 209.868 225.493 185.731 1 95.13 ? C25 PEE 904 D 1 HETATM 4 C C24 PEE . . . S 3 210.324 224.253 184.973 1 95.73 ? C24 PEE 904 D 1 HETATM 5 C C23 PEE . . . S 3 211.162 223.305 185.84 1 96.16 ? C23 PEE 904 D 1 HETATM 6 C C22 PEE . . . S 3 212.31 222.705 185.026 1 96.44 ? C22 PEE 904 D 1 HETATM 7 C C21 PEE . . . S 3 212.869 223.576 183.902 1 93.12 ? C21 PEE 904 D 1 HETATM 8 C C20 PEE . . . S 3 214.191 223.082 183.334 1 96.2 ? C20 PEE 904 D 1 HETATM 9 C C19 PEE . . . S 3 214.035 221.748 182.609 1 97.32 ? C19 PEE 904 D 1 HETATM 10 C C18 PEE . . . S 3 215.327 220.944 182.601 1 97.62 ? C18 PEE 904 D 1 HETATM 11 C C17 PEE . . . S 3 215.544 220.224 181.274 1 99.54 ? C17 PEE 904 D 1 HETATM 12 C C16 PEE . . . S 3 216.437 219.003 181.504 1 99.43 ? C16 PEE 904 D 1 HETATM 13 C C15 PEE . . . S 3 215.929 217.761 180.783 1 98.52 ? C15 PEE 904 D 1 HETATM 14 C C14 PEE . . . S 3 215.9 217.965 179.263 1 96.09 ? C14 PEE 904 D 1 HETATM 15 C C13 PEE . . . S 3 216.42 216.753 178.495 1 96.89 ? C13 PEE 904 D 1 HETATM 16 C C12 PEE . . . S 3 216.417 216.994 176.981 1 98.41 ? C12 PEE 904 D 1 HETATM 17 C C11 PEE . . . S 3 215.097 217.606 176.497 1 96.82 ? C11 PEE 904 D 1 HETATM 18 C C10 PEE . . . S 3 214.869 217.226 175.061 1 98.51 ? C10 PEE 904 D 1 HETATM 19 O O4 PEE . . . S 3 214.179 216.294 174.694 1 96.34 ? O4 PEE 904 D 1 HETATM 20 O O2 PEE . . . S 3 215.525 218.009 174.163 1 102.06 ? O2 PEE 904 D 1 HETATM 21 C C2 PEE . . . S 3 215.468 217.655 172.789 1 98.89 ? C2 PEE 904 D 1 HETATM 22 C C1 PEE . . . S 3 215.539 219 172.006 1 97.7 ? C1 PEE 904 D 1 HETATM 23 O O3P PEE . . . S 3 214.275 219.222 171.485 1 102.7 ? O3P PEE 904 D 1 HETATM 24 P P PEE . . . S 3 212.898 219.396 172.395 1 113.97 ? P PEE 904 D 1 HETATM 25 O O2P PEE . . . S 3 213.261 219.954 173.733 1 98.97 ? O2P PEE 904 D 1 HETATM 26 O O1P PEE . . . S 3 211.919 218.376 171.951 1 100.76 ? O1P PEE 904 D 1 HETATM 27 O O4P PEE . . . S 3 212.427 220.835 171.468 1 101.93 ? O4P PEE 904 D 1 HETATM 28 C C4 PEE . . . S 3 211.111 221.186 171.436 1 99.05 ? C4 PEE 904 D 1 HETATM 29 C C5 PEE . . . S 3 211.046 222.697 171.062 1 99.26 ? C5 PEE 904 D 1 HETATM 30 N N PEE . . . S 3 210.229 223.411 172.135 1 95.01 ? N PEE 904 D 1 HETATM 31 C C3 PEE . . . S 3 216.692 216.77 172.457 1 98.24 ? C3 PEE 904 D 1 HETATM 32 O O3 PEE . . . S 3 217.45 216.535 173.627 1 102.77 ? O3 PEE 904 D 1 HETATM 33 C C30 PEE . . . S 3 218.689 215.993 173.544 1 101 ? C30 PEE 904 D 1 HETATM 34 O O5 PEE . . . S 3 219.208 215.804 172.456 1 102.38 ? O5 PEE 904 D 1 HETATM 35 C C31 PEE . . . S 3 219.287 215.672 174.891 1 96.45 ? C31 PEE 904 D 1 HETATM 36 C C32 PEE . . . S 3 220.403 216.673 175.22 1 95.07 ? C32 PEE 904 D 1 HETATM 37 C C33 PEE . . . S 3 220.126 217.498 176.478 1 95.56 ? C33 PEE 904 D 1 HETATM 38 C C34 PEE . . . S 3 220.045 216.632 177.746 1 98.27 ? C34 PEE 904 D 1 HETATM 39 C C35 PEE . . . S 3 220.043 217.437 179.049 1 99.31 ? C35 PEE 904 D 1 HETATM 40 C C36 PEE . . . S 3 220.17 216.545 180.297 1 95.9 ? C36 PEE 904 D 1 HETATM 41 C C37 PEE . . . S 3 221.142 217.108 181.351 1 97.61 ? C37 PEE 904 D 1 HETATM 42 C C38 PEE . . . S 3 220.42 217.574 182.622 1 97.9 ? C38 PEE 904 D 1 HETATM 43 C C39 PEE . . . S 3 221.114 218.746 183.333 1 97.76 ? C39 PEE 904 D 1 HETATM 44 C C40 PEE . . . S 3 220.701 220.12 182.776 1 98.27 ? C40 PEE 904 D 1 HETATM 45 C C41 PEE . . . S 3 221.814 221.18 182.809 1 99.13 ? C41 PEE 904 D 1 HETATM 46 C C42 PEE . . . S 3 222.036 221.756 184.219 1 97.52 ? C42 PEE 904 D 1 HETATM 47 C C43 PEE . . . S 3 222.057 223.287 184.239 1 97.57 ? C43 PEE 904 D 1 HETATM 48 C C44 PEE . . . S 3 222.108 223.9 185.644 1 97.53 ? C44 PEE 904 D 1 HETATM 49 C C45 PEE . . . S 3 222.821 225.25 185.752 1 98.2 ? C45 PEE 904 D 1 HETATM 50 C C46 PEE . . . S 3 221.922 226.422 185.376 1 97.76 ? C46 PEE 904 D 1 HETATM 51 C C47 PEE . . . S 3 222.628 227.754 185.571 1 96.5 ? C47 PEE 904 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #