data_8DRF # _model_server_result.job_id 89jcNHXYwZ--7w31TSzhKA _model_server_result.datetime_utc '2024-11-16 07:56:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8drf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8DRF # _exptl.entry_id 8DRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DRF _cell.length_a 39.5 _cell.length_b 52.12 _cell.length_c 58.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 52.12 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 96 A CYS 96 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc1 A OE1 GLU 4 A GLU 4 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 A SD MET 7 A MET 7 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc3 A OE1 GLU 8 A GLU 8 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc4 A OE1 GLU 57 A GLU 57 1_555 C ZN ZN . A ZN 202 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc5 A ND1 HIS 60 A HIS 60 1_555 C ZN ZN . A ZN 202 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 A NE2 HIS 60 A HIS 60 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc7 A NE2 HIS 60 A HIS 60 1_555 E ZN ZN . A ZN 204 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 A NE2 HIS 63 A HIS 63 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc9 A OE1 GLU 86 A GLU 86 1_555 D ZN ZN . A ZN 203 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc10 A OE2 GLU 86 A GLU 86 1_555 D ZN ZN . A ZN 203 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc11 A NE2 HIS 102 A HIS 102 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc12 A NE2 HIS 104 A HIS 104 1_555 C ZN ZN . A ZN 202 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc13 B O1A HEC . A HEC 201 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc14 E ZN ZN . A ZN 204 1_555 F O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc15 E ZN ZN . A ZN 204 1_555 F O HOH . A HOH 365 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 8DRF _atom_sites.fract_transf_matrix[1][1] 0.025316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 150 HEC HEM . C 3 ZN A 1 202 2 ZN ZN . D 3 ZN A 1 203 3 ZN ZN . E 3 ZN A 1 204 4 ZN ZN . F 4 HOH A 1 301 44 HOH HOH . F 4 HOH A 2 302 81 HOH HOH . F 4 HOH A 3 303 58 HOH HOH . F 4 HOH A 4 304 4 HOH HOH . F 4 HOH A 5 305 61 HOH HOH . F 4 HOH A 6 306 30 HOH HOH . F 4 HOH A 7 307 57 HOH HOH . F 4 HOH A 8 308 9 HOH HOH . F 4 HOH A 9 309 78 HOH HOH . F 4 HOH A 10 310 35 HOH HOH . F 4 HOH A 11 311 68 HOH HOH . F 4 HOH A 12 312 33 HOH HOH . F 4 HOH A 13 313 46 HOH HOH . F 4 HOH A 14 314 26 HOH HOH . F 4 HOH A 15 315 28 HOH HOH . F 4 HOH A 16 316 3 HOH HOH . F 4 HOH A 17 317 69 HOH HOH . F 4 HOH A 18 318 21 HOH HOH . F 4 HOH A 19 319 2 HOH HOH . F 4 HOH A 20 320 10 HOH HOH . F 4 HOH A 21 321 8 HOH HOH . F 4 HOH A 22 322 52 HOH HOH . F 4 HOH A 23 323 19 HOH HOH . F 4 HOH A 24 324 29 HOH HOH . F 4 HOH A 25 325 1 HOH HOH . F 4 HOH A 26 326 76 HOH HOH . F 4 HOH A 27 327 51 HOH HOH . F 4 HOH A 28 328 53 HOH HOH . F 4 HOH A 29 329 62 HOH HOH . F 4 HOH A 30 330 37 HOH HOH . F 4 HOH A 31 331 25 HOH HOH . F 4 HOH A 32 332 36 HOH HOH . F 4 HOH A 33 333 55 HOH HOH . F 4 HOH A 34 334 83 HOH HOH . F 4 HOH A 35 335 66 HOH HOH . F 4 HOH A 36 336 40 HOH HOH . F 4 HOH A 37 337 71 HOH HOH . F 4 HOH A 38 338 34 HOH HOH . F 4 HOH A 39 339 45 HOH HOH . F 4 HOH A 40 340 7 HOH HOH . F 4 HOH A 41 341 75 HOH HOH . F 4 HOH A 42 342 24 HOH HOH . F 4 HOH A 43 343 54 HOH HOH . F 4 HOH A 44 344 79 HOH HOH . F 4 HOH A 45 345 23 HOH HOH . F 4 HOH A 46 346 27 HOH HOH . F 4 HOH A 47 347 56 HOH HOH . F 4 HOH A 48 348 18 HOH HOH . F 4 HOH A 49 349 12 HOH HOH . F 4 HOH A 50 350 80 HOH HOH . F 4 HOH A 51 351 39 HOH HOH . F 4 HOH A 52 352 60 HOH HOH . F 4 HOH A 53 353 63 HOH HOH . F 4 HOH A 54 354 49 HOH HOH . F 4 HOH A 55 355 5 HOH HOH . F 4 HOH A 56 356 32 HOH HOH . F 4 HOH A 57 357 77 HOH HOH . F 4 HOH A 58 358 11 HOH HOH . F 4 HOH A 59 359 14 HOH HOH . F 4 HOH A 60 360 70 HOH HOH . F 4 HOH A 61 361 42 HOH HOH . F 4 HOH A 62 362 72 HOH HOH . F 4 HOH A 63 363 67 HOH HOH . F 4 HOH A 64 364 50 HOH HOH . F 4 HOH A 65 365 6 HOH HOH . F 4 HOH A 66 366 20 HOH HOH . F 4 HOH A 67 367 15 HOH HOH . F 4 HOH A 68 368 17 HOH HOH . F 4 HOH A 69 369 13 HOH HOH . F 4 HOH A 70 370 22 HOH HOH . F 4 HOH A 71 371 65 HOH HOH . F 4 HOH A 72 372 31 HOH HOH . F 4 HOH A 73 373 74 HOH HOH . F 4 HOH A 74 374 16 HOH HOH . F 4 HOH A 75 375 59 HOH HOH . F 4 HOH A 76 376 43 HOH HOH . F 4 HOH A 77 377 64 HOH HOH . F 4 HOH A 78 378 41 HOH HOH . F 4 HOH A 79 379 47 HOH HOH . F 4 HOH A 80 380 82 HOH HOH . F 4 HOH A 81 381 73 HOH HOH . F 4 HOH A 82 382 38 HOH HOH . F 4 HOH A 83 383 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 9.47 15.106 -4.4 1 15.94 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . B 2 9.275 14.073 -7.647 1 16.81 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . B 2 6.349 13.845 -3.779 1 14.72 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . B 2 9.492 16.482 -1.233 1 14.44 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . B 2 12.702 16.227 -4.904 1 15.46 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . B 2 8.08 14.123 -5.51 1 15.44 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . B 2 8.165 13.848 -6.862 1 16.1 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . B 2 6.902 13.262 -7.265 1 15.94 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . B 2 6.105 13.213 -6.197 1 15.36 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . B 2 6.832 13.751 -5.066 1 15.2 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . B 2 4.665 12.672 -6.141 1 14.99 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . B 2 6.529 12.82 -8.697 1 16.69 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . B 2 6.839 11.357 -8.97 1 16.19 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . B 2 6.502 11.136 -10.431 1 16.06 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . B 2 5.571 10.344 -10.71 1 15.99 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . B 2 7.134 11.785 -11.303 1 16.67 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . B 2 8.176 15.124 -2.79 1 14.53 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . B 2 6.913 14.577 -2.766 1 14.42 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . B 2 6.284 14.911 -1.499 1 14.32 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . B 2 7.147 15.668 -0.801 1 14.18 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . B 2 8.357 15.782 -1.582 1 14.39 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . B 2 4.848 14.491 -1.128 1 14.62 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . B 2 6.999 16.27 0.621 1 14.2 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . B 2 6.289 15.629 1.571 1 14.23 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . B 2 10.84 16.2 -3.332 1 14.99 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . B 2 10.63 16.577 -2.008 1 14.73 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . B 2 11.847 17.135 -1.502 1 14.87 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . B 2 12.784 17.079 -2.455 1 15 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . B 2 12.154 16.487 -3.657 1 15.16 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . B 2 11.947 17.659 -0.057 1 14.9 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . B 2 14.268 17.537 -2.277 1 15.1 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . B 2 14.753 18.369 -1.337 1 14.98 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . B 2 10.755 15.132 -5.964 1 15.94 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . B 2 12.037 15.657 -5.974 1 15.87 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . B 2 12.558 15.502 -7.327 1 16.64 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . B 2 11.624 14.903 -8.073 1 17.14 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . B 2 10.463 14.655 -7.243 1 16.6 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . B 2 13.96 15.93 -7.791 1 17.23 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . B 2 11.765 14.528 -9.567 1 18.28 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . B 2 11.956 13.008 -9.575 1 18.51 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . B 2 12.102 12.434 -10.962 1 19.5 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . B 2 12.024 11.175 -11.078 1 19.5 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . B 2 12.287 13.203 -11.945 1 19.93 ? O2D HEC 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 43 #