data_8DRF # _model_server_result.job_id ibOvT-Yv55VawL2Qj56WlA _model_server_result.datetime_utc '2024-11-16 08:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8drf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8DRF # _exptl.entry_id 8DRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DRF _cell.length_a 39.5 _cell.length_b 52.12 _cell.length_c 58.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 52.12 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 96 A CYS 96 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A SG CYS 98 A CYS 98 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? metalc ? metalc1 A OE1 GLU 4 A GLU 4 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc2 A SD MET 7 A MET 7 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc3 A OE1 GLU 8 A GLU 8 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc4 A OE1 GLU 57 A GLU 57 1_555 C ZN ZN . A ZN 202 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc5 A ND1 HIS 60 A HIS 60 1_555 C ZN ZN . A ZN 202 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 A NE2 HIS 60 A HIS 60 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc7 A NE2 HIS 60 A HIS 60 1_555 E ZN ZN . A ZN 204 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 A NE2 HIS 63 A HIS 63 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc9 A OE1 GLU 86 A GLU 86 1_555 D ZN ZN . A ZN 203 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc10 A OE2 GLU 86 A GLU 86 1_555 D ZN ZN . A ZN 203 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc11 A NE2 HIS 102 A HIS 102 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc12 A NE2 HIS 104 A HIS 104 1_555 C ZN ZN . A ZN 202 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc13 B O1A HEC . A HEC 201 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc14 E ZN ZN . A ZN 204 1_555 F O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc15 E ZN ZN . A ZN 204 1_555 F O HOH . A HOH 365 2_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DRF _atom_sites.fract_transf_matrix[1][1] 0.025316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 150 HEC HEM . C 3 ZN A 1 202 2 ZN ZN . D 3 ZN A 1 203 3 ZN ZN . E 3 ZN A 1 204 4 ZN ZN . F 4 HOH A 1 301 44 HOH HOH . F 4 HOH A 2 302 81 HOH HOH . F 4 HOH A 3 303 58 HOH HOH . F 4 HOH A 4 304 4 HOH HOH . F 4 HOH A 5 305 61 HOH HOH . F 4 HOH A 6 306 30 HOH HOH . F 4 HOH A 7 307 57 HOH HOH . F 4 HOH A 8 308 9 HOH HOH . F 4 HOH A 9 309 78 HOH HOH . F 4 HOH A 10 310 35 HOH HOH . F 4 HOH A 11 311 68 HOH HOH . F 4 HOH A 12 312 33 HOH HOH . F 4 HOH A 13 313 46 HOH HOH . F 4 HOH A 14 314 26 HOH HOH . F 4 HOH A 15 315 28 HOH HOH . F 4 HOH A 16 316 3 HOH HOH . F 4 HOH A 17 317 69 HOH HOH . F 4 HOH A 18 318 21 HOH HOH . F 4 HOH A 19 319 2 HOH HOH . F 4 HOH A 20 320 10 HOH HOH . F 4 HOH A 21 321 8 HOH HOH . F 4 HOH A 22 322 52 HOH HOH . F 4 HOH A 23 323 19 HOH HOH . F 4 HOH A 24 324 29 HOH HOH . F 4 HOH A 25 325 1 HOH HOH . F 4 HOH A 26 326 76 HOH HOH . F 4 HOH A 27 327 51 HOH HOH . F 4 HOH A 28 328 53 HOH HOH . F 4 HOH A 29 329 62 HOH HOH . F 4 HOH A 30 330 37 HOH HOH . F 4 HOH A 31 331 25 HOH HOH . F 4 HOH A 32 332 36 HOH HOH . F 4 HOH A 33 333 55 HOH HOH . F 4 HOH A 34 334 83 HOH HOH . F 4 HOH A 35 335 66 HOH HOH . F 4 HOH A 36 336 40 HOH HOH . F 4 HOH A 37 337 71 HOH HOH . F 4 HOH A 38 338 34 HOH HOH . F 4 HOH A 39 339 45 HOH HOH . F 4 HOH A 40 340 7 HOH HOH . F 4 HOH A 41 341 75 HOH HOH . F 4 HOH A 42 342 24 HOH HOH . F 4 HOH A 43 343 54 HOH HOH . F 4 HOH A 44 344 79 HOH HOH . F 4 HOH A 45 345 23 HOH HOH . F 4 HOH A 46 346 27 HOH HOH . F 4 HOH A 47 347 56 HOH HOH . F 4 HOH A 48 348 18 HOH HOH . F 4 HOH A 49 349 12 HOH HOH . F 4 HOH A 50 350 80 HOH HOH . F 4 HOH A 51 351 39 HOH HOH . F 4 HOH A 52 352 60 HOH HOH . F 4 HOH A 53 353 63 HOH HOH . F 4 HOH A 54 354 49 HOH HOH . F 4 HOH A 55 355 5 HOH HOH . F 4 HOH A 56 356 32 HOH HOH . F 4 HOH A 57 357 77 HOH HOH . F 4 HOH A 58 358 11 HOH HOH . F 4 HOH A 59 359 14 HOH HOH . F 4 HOH A 60 360 70 HOH HOH . F 4 HOH A 61 361 42 HOH HOH . F 4 HOH A 62 362 72 HOH HOH . F 4 HOH A 63 363 67 HOH HOH . F 4 HOH A 64 364 50 HOH HOH . F 4 HOH A 65 365 6 HOH HOH . F 4 HOH A 66 366 20 HOH HOH . F 4 HOH A 67 367 15 HOH HOH . F 4 HOH A 68 368 17 HOH HOH . F 4 HOH A 69 369 13 HOH HOH . F 4 HOH A 70 370 22 HOH HOH . F 4 HOH A 71 371 65 HOH HOH . F 4 HOH A 72 372 31 HOH HOH . F 4 HOH A 73 373 74 HOH HOH . F 4 HOH A 74 374 16 HOH HOH . F 4 HOH A 75 375 59 HOH HOH . F 4 HOH A 76 376 43 HOH HOH . F 4 HOH A 77 377 64 HOH HOH . F 4 HOH A 78 378 41 HOH HOH . F 4 HOH A 79 379 47 HOH HOH . F 4 HOH A 80 380 82 HOH HOH . F 4 HOH A 81 381 73 HOH HOH . F 4 HOH A 82 382 38 HOH HOH . F 4 HOH A 83 383 48 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.544 _atom_site.Cartn_y 26.06 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 20.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #