data_8DRR # _model_server_result.job_id edCrk0wX4wLTDS-9t-MStw _model_server_result.datetime_utc '2024-11-14 21:03:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8drr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8DRR # _exptl.entry_id 8DRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DRR _cell.length_a 67.255 _cell.length_b 107.417 _cell.length_c 138.072 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F 1 1 C,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 221 A ASN 221 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc2 A OD1 ASN 221 A ASN 221 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc3 A O PHE 223 A PHE 223 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A O ASP 263 A ASP 263 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc5 A OD1 ASP 263 A ASP 263 1_555 D NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc6 D NA NA . A NA 401 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DRR _atom_sites.fract_transf_matrix[1][1] 0.014869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 401 2 NA NA . E 3 HOH A 1 501 235 HOH HOH . E 3 HOH A 2 502 193 HOH HOH . E 3 HOH A 3 503 5 HOH HOH . E 3 HOH A 4 504 110 HOH HOH . E 3 HOH A 5 505 165 HOH HOH . E 3 HOH A 6 506 17 HOH HOH . E 3 HOH A 7 507 198 HOH HOH . E 3 HOH A 8 508 121 HOH HOH . E 3 HOH A 9 509 20 HOH HOH . E 3 HOH A 10 510 237 HOH HOH . E 3 HOH A 11 511 43 HOH HOH . E 3 HOH A 12 512 155 HOH HOH . E 3 HOH A 13 513 212 HOH HOH . E 3 HOH A 14 514 24 HOH HOH . E 3 HOH A 15 515 131 HOH HOH . E 3 HOH A 16 516 2 HOH HOH . E 3 HOH A 17 517 109 HOH HOH . E 3 HOH A 18 518 129 HOH HOH . E 3 HOH A 19 519 76 HOH HOH . E 3 HOH A 20 520 59 HOH HOH . E 3 HOH A 21 521 6 HOH HOH . E 3 HOH A 22 522 83 HOH HOH . E 3 HOH A 23 523 130 HOH HOH . E 3 HOH A 24 524 145 HOH HOH . E 3 HOH A 25 525 13 HOH HOH . E 3 HOH A 26 526 42 HOH HOH . E 3 HOH A 27 527 37 HOH HOH . E 3 HOH A 28 528 81 HOH HOH . E 3 HOH A 29 529 18 HOH HOH . E 3 HOH A 30 530 12 HOH HOH . E 3 HOH A 31 531 192 HOH HOH . E 3 HOH A 32 532 7 HOH HOH . E 3 HOH A 33 533 224 HOH HOH . E 3 HOH A 34 534 139 HOH HOH . E 3 HOH A 35 535 64 HOH HOH . E 3 HOH A 36 536 197 HOH HOH . E 3 HOH A 37 537 88 HOH HOH . E 3 HOH A 38 538 99 HOH HOH . E 3 HOH A 39 539 150 HOH HOH . E 3 HOH A 40 540 54 HOH HOH . E 3 HOH A 41 541 160 HOH HOH . E 3 HOH A 42 542 143 HOH HOH . E 3 HOH A 43 543 112 HOH HOH . E 3 HOH A 44 544 124 HOH HOH . E 3 HOH A 45 545 179 HOH HOH . E 3 HOH A 46 546 93 HOH HOH . E 3 HOH A 47 547 115 HOH HOH . E 3 HOH A 48 548 156 HOH HOH . E 3 HOH A 49 549 134 HOH HOH . E 3 HOH A 50 550 56 HOH HOH . E 3 HOH A 51 551 30 HOH HOH . E 3 HOH A 52 552 53 HOH HOH . E 3 HOH A 53 553 1 HOH HOH . E 3 HOH A 54 554 4 HOH HOH . E 3 HOH A 55 555 113 HOH HOH . E 3 HOH A 56 556 144 HOH HOH . E 3 HOH A 57 557 11 HOH HOH . E 3 HOH A 58 558 82 HOH HOH . E 3 HOH A 59 559 232 HOH HOH . E 3 HOH A 60 560 114 HOH HOH . E 3 HOH A 61 561 87 HOH HOH . E 3 HOH A 62 562 19 HOH HOH . E 3 HOH A 63 563 107 HOH HOH . E 3 HOH A 64 564 94 HOH HOH . E 3 HOH A 65 565 39 HOH HOH . E 3 HOH A 66 566 149 HOH HOH . E 3 HOH A 67 567 41 HOH HOH . E 3 HOH A 68 568 92 HOH HOH . E 3 HOH A 69 569 171 HOH HOH . E 3 HOH A 70 570 161 HOH HOH . E 3 HOH A 71 571 85 HOH HOH . E 3 HOH A 72 572 44 HOH HOH . E 3 HOH A 73 573 21 HOH HOH . E 3 HOH A 74 574 182 HOH HOH . E 3 HOH A 75 575 172 HOH HOH . E 3 HOH A 76 576 90 HOH HOH . E 3 HOH A 77 577 14 HOH HOH . E 3 HOH A 78 578 73 HOH HOH . E 3 HOH A 79 579 103 HOH HOH . E 3 HOH A 80 580 159 HOH HOH . E 3 HOH A 81 581 227 HOH HOH . E 3 HOH A 82 582 97 HOH HOH . E 3 HOH A 83 583 127 HOH HOH . E 3 HOH A 84 584 62 HOH HOH . E 3 HOH A 85 585 138 HOH HOH . E 3 HOH A 86 586 236 HOH HOH . E 3 HOH A 87 587 228 HOH HOH . E 3 HOH A 88 588 122 HOH HOH . E 3 HOH A 89 589 70 HOH HOH . E 3 HOH A 90 590 205 HOH HOH . E 3 HOH A 91 591 206 HOH HOH . E 3 HOH A 92 592 67 HOH HOH . E 3 HOH A 93 593 71 HOH HOH . E 3 HOH A 94 594 28 HOH HOH . E 3 HOH A 95 595 74 HOH HOH . E 3 HOH A 96 596 57 HOH HOH . E 3 HOH A 97 597 132 HOH HOH . E 3 HOH A 98 598 125 HOH HOH . E 3 HOH A 99 599 117 HOH HOH . E 3 HOH A 100 600 72 HOH HOH . E 3 HOH A 101 601 213 HOH HOH . E 3 HOH A 102 602 180 HOH HOH . E 3 HOH A 103 603 36 HOH HOH . E 3 HOH A 104 604 133 HOH HOH . E 3 HOH A 105 605 226 HOH HOH . E 3 HOH A 106 606 167 HOH HOH . E 3 HOH A 107 607 157 HOH HOH . E 3 HOH A 108 608 69 HOH HOH . E 3 HOH A 109 609 89 HOH HOH . E 3 HOH A 110 610 158 HOH HOH . E 3 HOH A 111 611 77 HOH HOH . E 3 HOH A 112 612 219 HOH HOH . F 3 HOH B 1 401 203 HOH HOH . F 3 HOH B 2 402 58 HOH HOH . F 3 HOH B 3 403 65 HOH HOH . F 3 HOH B 4 404 176 HOH HOH . F 3 HOH B 5 405 170 HOH HOH . F 3 HOH B 6 406 153 HOH HOH . F 3 HOH B 7 407 25 HOH HOH . F 3 HOH B 8 408 38 HOH HOH . F 3 HOH B 9 409 79 HOH HOH . F 3 HOH B 10 410 140 HOH HOH . F 3 HOH B 11 411 105 HOH HOH . F 3 HOH B 12 412 209 HOH HOH . F 3 HOH B 13 413 51 HOH HOH . F 3 HOH B 14 414 116 HOH HOH . F 3 HOH B 15 415 16 HOH HOH . F 3 HOH B 16 416 177 HOH HOH . F 3 HOH B 17 417 202 HOH HOH . F 3 HOH B 18 418 23 HOH HOH . F 3 HOH B 19 419 154 HOH HOH . F 3 HOH B 20 420 10 HOH HOH . F 3 HOH B 21 421 148 HOH HOH . F 3 HOH B 22 422 8 HOH HOH . F 3 HOH B 23 423 146 HOH HOH . F 3 HOH B 24 424 210 HOH HOH . F 3 HOH B 25 425 32 HOH HOH . F 3 HOH B 26 426 40 HOH HOH . F 3 HOH B 27 427 27 HOH HOH . F 3 HOH B 28 428 201 HOH HOH . F 3 HOH B 29 429 100 HOH HOH . F 3 HOH B 30 430 61 HOH HOH . F 3 HOH B 31 431 95 HOH HOH . F 3 HOH B 32 432 137 HOH HOH . F 3 HOH B 33 433 31 HOH HOH . F 3 HOH B 34 434 147 HOH HOH . F 3 HOH B 35 435 60 HOH HOH . F 3 HOH B 36 436 3 HOH HOH . F 3 HOH B 37 437 86 HOH HOH . F 3 HOH B 38 438 220 HOH HOH . F 3 HOH B 39 439 48 HOH HOH . F 3 HOH B 40 440 108 HOH HOH . F 3 HOH B 41 441 34 HOH HOH . F 3 HOH B 42 442 214 HOH HOH . F 3 HOH B 43 443 200 HOH HOH . F 3 HOH B 44 444 45 HOH HOH . F 3 HOH B 45 445 123 HOH HOH . F 3 HOH B 46 446 195 HOH HOH . F 3 HOH B 47 447 9 HOH HOH . F 3 HOH B 48 448 63 HOH HOH . F 3 HOH B 49 449 68 HOH HOH . F 3 HOH B 50 450 47 HOH HOH . F 3 HOH B 51 451 152 HOH HOH . F 3 HOH B 52 452 186 HOH HOH . F 3 HOH B 53 453 15 HOH HOH . F 3 HOH B 54 454 169 HOH HOH . F 3 HOH B 55 455 22 HOH HOH . F 3 HOH B 56 456 106 HOH HOH . F 3 HOH B 57 457 233 HOH HOH . F 3 HOH B 58 458 26 HOH HOH . F 3 HOH B 59 459 164 HOH HOH . F 3 HOH B 60 460 166 HOH HOH . F 3 HOH B 61 461 49 HOH HOH . F 3 HOH B 62 462 104 HOH HOH . F 3 HOH B 63 463 234 HOH HOH . F 3 HOH B 64 464 66 HOH HOH . F 3 HOH B 65 465 187 HOH HOH . F 3 HOH B 66 466 240 HOH HOH . F 3 HOH B 67 467 50 HOH HOH . F 3 HOH B 68 468 35 HOH HOH . F 3 HOH B 69 469 29 HOH HOH . F 3 HOH B 70 470 98 HOH HOH . F 3 HOH B 71 471 162 HOH HOH . F 3 HOH B 72 472 142 HOH HOH . F 3 HOH B 73 473 221 HOH HOH . F 3 HOH B 74 474 55 HOH HOH . F 3 HOH B 75 475 119 HOH HOH . F 3 HOH B 76 476 96 HOH HOH . F 3 HOH B 77 477 102 HOH HOH . F 3 HOH B 78 478 174 HOH HOH . F 3 HOH B 79 479 84 HOH HOH . F 3 HOH B 80 480 204 HOH HOH . F 3 HOH B 81 481 185 HOH HOH . F 3 HOH B 82 482 173 HOH HOH . F 3 HOH B 83 483 208 HOH HOH . F 3 HOH B 84 484 239 HOH HOH . F 3 HOH B 85 485 128 HOH HOH . F 3 HOH B 86 486 80 HOH HOH . F 3 HOH B 87 487 191 HOH HOH . F 3 HOH B 88 488 126 HOH HOH . F 3 HOH B 89 489 222 HOH HOH . F 3 HOH B 90 490 183 HOH HOH . F 3 HOH B 91 491 101 HOH HOH . F 3 HOH B 92 492 78 HOH HOH . F 3 HOH B 93 493 184 HOH HOH . F 3 HOH B 94 494 46 HOH HOH . F 3 HOH B 95 495 136 HOH HOH . G 3 HOH C 1 401 225 HOH HOH . G 3 HOH C 2 402 238 HOH HOH . G 3 HOH C 3 403 178 HOH HOH . G 3 HOH C 4 404 175 HOH HOH . G 3 HOH C 5 405 181 HOH HOH . G 3 HOH C 6 406 91 HOH HOH . G 3 HOH C 7 407 216 HOH HOH . G 3 HOH C 8 408 33 HOH HOH . G 3 HOH C 9 409 207 HOH HOH . G 3 HOH C 10 410 120 HOH HOH . G 3 HOH C 11 411 231 HOH HOH . G 3 HOH C 12 412 168 HOH HOH . G 3 HOH C 13 413 75 HOH HOH . G 3 HOH C 14 414 229 HOH HOH . G 3 HOH C 15 415 118 HOH HOH . G 3 HOH C 16 416 141 HOH HOH . G 3 HOH C 17 417 217 HOH HOH . G 3 HOH C 18 418 111 HOH HOH . G 3 HOH C 19 419 135 HOH HOH . G 3 HOH C 20 420 196 HOH HOH . G 3 HOH C 21 421 52 HOH HOH . G 3 HOH C 22 422 199 HOH HOH . G 3 HOH C 23 423 151 HOH HOH . G 3 HOH C 24 424 223 HOH HOH . G 3 HOH C 25 425 230 HOH HOH . G 3 HOH C 26 426 218 HOH HOH . G 3 HOH C 27 427 211 HOH HOH . G 3 HOH C 28 428 215 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.057 _atom_site.Cartn_y -10.409 _atom_site.Cartn_z 22.085 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #