data_8DRU
#
_model_server_result.job_id            LOWqiglGNSPPIosw7U0fWw 
_model_server_result.datetime_utc      '2024-11-21 11:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dru 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":405}' 
#
_entry.id    8DRU 
#
_exptl.entry_id    8DRU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.34 
_cell.angle_gamma         90 
_cell.entry_id            8DRU 
_cell.length_a            166.11 
_cell.length_b            174.89 
_cell.length_c            96.33 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DRU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,H,I,J,K,L,FA 1 1,2 
B,E,M,N,O,P,W,X,Y,GA,JA 2 1 
C,F,Q,R,S,T,Z,AA,BA,HA,KA 3 1 
D,G,U,V,CA,DA,EA,IA,LA 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
? 3 AA N N 
? 3 BA N N 
? 3 DA N N 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 274 n n 
C1 C2 PEG sing 275 n n 
C1 H11 PEG sing 276 n n 
C1 H12 PEG sing 277 n n 
O1 HO1 PEG sing 278 n n 
C2 O2 PEG sing 279 n n 
C2 H21 PEG sing 280 n n 
C2 H22 PEG sing 281 n n 
O2 C3 PEG sing 282 n n 
C3 C4 PEG sing 283 n n 
C3 H31 PEG sing 284 n n 
C3 H32 PEG sing 285 n n 
C4 O4 PEG sing 286 n n 
C4 H41 PEG sing 287 n n 
C4 H42 PEG sing 288 n n 
O4 HO4 PEG sing 289 n n 
#
_atom_sites.entry_id                     8DRU 
_atom_sites.fract_transf_matrix[1][1]    0.00602 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001765 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005718 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 PO4 A 1 401 2 PO4 PO4 . 
I 3 PEG A 1 402 1 PEG PEG . 
J 3 PEG A 1 403 2 PEG PEG . 
K 3 PEG A 1 404 3 PEG PEG . 
L 3 PEG A 1 405 4 PEG PEG . 
M 2 PO4 B 1 401 3 PO4 PO4 . 
N 2 PO4 B 1 402 6 PO4 PO4 . 
O 3 PEG B 1 403 9 PEG PEG . 
P 3 PEG B 1 404 12 PEG PEG . 
Q 2 PO4 C 1 401 4 PO4 PO4 . 
R 3 PEG C 1 402 5 PEG PEG . 
S 3 PEG C 1 403 7 PEG PEG . 
T 3 PEG C 1 404 8 PEG PEG . 
U 2 PO4 D 1 401 5 PO4 PO4 . 
V 3 PEG D 1 402 15 PEG PEG . 
W 2 PO4 E 1 401 1 PO4 PO4 . 
X 3 PEG E 1 402 10 PEG PEG . 
Y 4 1PE E 1 403 11 1PE 1PE . 
Z 2 PO4 F 1 401 7 PO4 PO4 . 
AA 3 PEG F 1 402 6 PEG PEG . 
BA 3 PEG F 1 403 13 PEG PEG . 
CA 2 PO4 G 1 401 8 PO4 PO4 . 
DA 3 PEG G 1 402 14 PEG PEG . 
EA 4 1PE G 1 403 16 1PE 1PE . 
FA 5 HOH A 1 501 162 HOH HOH . 
FA 5 HOH A 2 502 116 HOH HOH . 
FA 5 HOH A 3 503 158 HOH HOH . 
FA 5 HOH A 4 504 156 HOH HOH . 
FA 5 HOH A 5 505 56 HOH HOH . 
FA 5 HOH A 6 506 89 HOH HOH . 
FA 5 HOH A 7 507 5 HOH HOH . 
FA 5 HOH A 8 508 17 HOH HOH . 
FA 5 HOH A 9 509 93 HOH HOH . 
FA 5 HOH A 10 510 137 HOH HOH . 
FA 5 HOH A 11 511 18 HOH HOH . 
FA 5 HOH A 12 512 12 HOH HOH . 
FA 5 HOH A 13 513 166 HOH HOH . 
FA 5 HOH A 14 514 25 HOH HOH . 
FA 5 HOH A 15 515 16 HOH HOH . 
FA 5 HOH A 16 516 70 HOH HOH . 
FA 5 HOH A 17 517 71 HOH HOH . 
FA 5 HOH A 18 518 111 HOH HOH . 
FA 5 HOH A 19 519 135 HOH HOH . 
FA 5 HOH A 20 520 60 HOH HOH . 
FA 5 HOH A 21 521 113 HOH HOH . 
FA 5 HOH A 22 522 55 HOH HOH . 
FA 5 HOH A 23 523 150 HOH HOH . 
FA 5 HOH A 24 524 20 HOH HOH . 
FA 5 HOH A 25 525 185 HOH HOH . 
FA 5 HOH A 26 526 57 HOH HOH . 
FA 5 HOH A 27 527 21 HOH HOH . 
FA 5 HOH A 28 528 179 HOH HOH . 
FA 5 HOH A 29 529 153 HOH HOH . 
FA 5 HOH A 30 530 39 HOH HOH . 
FA 5 HOH A 31 531 173 HOH HOH . 
FA 5 HOH A 32 532 205 HOH HOH . 
FA 5 HOH A 33 533 157 HOH HOH . 
FA 5 HOH A 34 534 122 HOH HOH . 
FA 5 HOH A 35 535 44 HOH HOH . 
FA 5 HOH A 36 536 101 HOH HOH . 
FA 5 HOH A 37 537 125 HOH HOH . 
FA 5 HOH A 38 538 152 HOH HOH . 
FA 5 HOH A 39 539 186 HOH HOH . 
FA 5 HOH A 40 540 151 HOH HOH . 
FA 5 HOH A 41 541 204 HOH HOH . 
GA 5 HOH B 1 501 65 HOH HOH . 
GA 5 HOH B 2 502 66 HOH HOH . 
GA 5 HOH B 3 503 83 HOH HOH . 
GA 5 HOH B 4 504 15 HOH HOH . 
GA 5 HOH B 5 505 53 HOH HOH . 
GA 5 HOH B 6 506 31 HOH HOH . 
GA 5 HOH B 7 507 72 HOH HOH . 
GA 5 HOH B 8 508 154 HOH HOH . 
GA 5 HOH B 9 509 28 HOH HOH . 
GA 5 HOH B 10 510 120 HOH HOH . 
GA 5 HOH B 11 511 110 HOH HOH . 
GA 5 HOH B 12 512 108 HOH HOH . 
GA 5 HOH B 13 513 141 HOH HOH . 
GA 5 HOH B 14 514 26 HOH HOH . 
GA 5 HOH B 15 515 175 HOH HOH . 
GA 5 HOH B 16 516 95 HOH HOH . 
GA 5 HOH B 17 517 9 HOH HOH . 
GA 5 HOH B 18 518 3 HOH HOH . 
GA 5 HOH B 19 519 22 HOH HOH . 
GA 5 HOH B 20 520 142 HOH HOH . 
GA 5 HOH B 21 521 96 HOH HOH . 
GA 5 HOH B 22 522 35 HOH HOH . 
GA 5 HOH B 23 523 109 HOH HOH . 
GA 5 HOH B 24 524 118 HOH HOH . 
GA 5 HOH B 25 525 127 HOH HOH . 
GA 5 HOH B 26 526 92 HOH HOH . 
GA 5 HOH B 27 527 88 HOH HOH . 
GA 5 HOH B 28 528 76 HOH HOH . 
GA 5 HOH B 29 529 114 HOH HOH . 
GA 5 HOH B 30 530 123 HOH HOH . 
GA 5 HOH B 31 531 81 HOH HOH . 
GA 5 HOH B 32 532 164 HOH HOH . 
GA 5 HOH B 33 533 167 HOH HOH . 
GA 5 HOH B 34 534 77 HOH HOH . 
GA 5 HOH B 35 535 40 HOH HOH . 
GA 5 HOH B 36 536 52 HOH HOH . 
GA 5 HOH B 37 537 85 HOH HOH . 
GA 5 HOH B 38 538 90 HOH HOH . 
GA 5 HOH B 39 539 107 HOH HOH . 
GA 5 HOH B 40 540 170 HOH HOH . 
GA 5 HOH B 41 541 106 HOH HOH . 
GA 5 HOH B 42 542 102 HOH HOH . 
GA 5 HOH B 43 543 145 HOH HOH . 
GA 5 HOH B 44 544 99 HOH HOH . 
GA 5 HOH B 45 545 94 HOH HOH . 
GA 5 HOH B 46 546 199 HOH HOH . 
GA 5 HOH B 47 547 79 HOH HOH . 
GA 5 HOH B 48 548 124 HOH HOH . 
HA 5 HOH C 1 501 188 HOH HOH . 
HA 5 HOH C 2 502 86 HOH HOH . 
HA 5 HOH C 3 503 58 HOH HOH . 
HA 5 HOH C 4 504 73 HOH HOH . 
HA 5 HOH C 5 505 6 HOH HOH . 
HA 5 HOH C 6 506 139 HOH HOH . 
HA 5 HOH C 7 507 7 HOH HOH . 
HA 5 HOH C 8 508 63 HOH HOH . 
HA 5 HOH C 9 509 48 HOH HOH . 
HA 5 HOH C 10 510 61 HOH HOH . 
HA 5 HOH C 11 511 136 HOH HOH . 
HA 5 HOH C 12 512 176 HOH HOH . 
HA 5 HOH C 13 513 84 HOH HOH . 
HA 5 HOH C 14 514 172 HOH HOH . 
HA 5 HOH C 15 515 30 HOH HOH . 
HA 5 HOH C 16 516 1 HOH HOH . 
HA 5 HOH C 17 517 46 HOH HOH . 
HA 5 HOH C 18 518 59 HOH HOH . 
HA 5 HOH C 19 519 103 HOH HOH . 
HA 5 HOH C 20 520 27 HOH HOH . 
HA 5 HOH C 21 521 68 HOH HOH . 
HA 5 HOH C 22 522 75 HOH HOH . 
HA 5 HOH C 23 523 91 HOH HOH . 
HA 5 HOH C 24 524 112 HOH HOH . 
HA 5 HOH C 25 525 160 HOH HOH . 
HA 5 HOH C 26 526 2 HOH HOH . 
HA 5 HOH C 27 527 23 HOH HOH . 
HA 5 HOH C 28 528 207 HOH HOH . 
HA 5 HOH C 29 529 51 HOH HOH . 
HA 5 HOH C 30 530 187 HOH HOH . 
HA 5 HOH C 31 531 148 HOH HOH . 
HA 5 HOH C 32 532 50 HOH HOH . 
HA 5 HOH C 33 533 196 HOH HOH . 
HA 5 HOH C 34 534 117 HOH HOH . 
HA 5 HOH C 35 535 45 HOH HOH . 
HA 5 HOH C 36 536 184 HOH HOH . 
HA 5 HOH C 37 537 134 HOH HOH . 
HA 5 HOH C 38 538 200 HOH HOH . 
HA 5 HOH C 39 539 171 HOH HOH . 
HA 5 HOH C 40 540 29 HOH HOH . 
HA 5 HOH C 41 541 190 HOH HOH . 
HA 5 HOH C 42 542 177 HOH HOH . 
HA 5 HOH C 43 543 194 HOH HOH . 
HA 5 HOH C 44 544 195 HOH HOH . 
HA 5 HOH C 45 545 180 HOH HOH . 
HA 5 HOH C 46 546 146 HOH HOH . 
HA 5 HOH C 47 547 149 HOH HOH . 
HA 5 HOH C 48 548 131 HOH HOH . 
HA 5 HOH C 49 549 140 HOH HOH . 
IA 5 HOH D 1 501 193 HOH HOH . 
IA 5 HOH D 2 502 159 HOH HOH . 
IA 5 HOH D 3 503 38 HOH HOH . 
IA 5 HOH D 4 504 37 HOH HOH . 
IA 5 HOH D 5 505 11 HOH HOH . 
IA 5 HOH D 6 506 98 HOH HOH . 
IA 5 HOH D 7 507 161 HOH HOH . 
IA 5 HOH D 8 508 10 HOH HOH . 
IA 5 HOH D 9 509 100 HOH HOH . 
IA 5 HOH D 10 510 80 HOH HOH . 
IA 5 HOH D 11 511 62 HOH HOH . 
IA 5 HOH D 12 512 178 HOH HOH . 
IA 5 HOH D 13 513 206 HOH HOH . 
IA 5 HOH D 14 514 181 HOH HOH . 
IA 5 HOH D 15 515 169 HOH HOH . 
IA 5 HOH D 16 516 130 HOH HOH . 
IA 5 HOH D 17 517 129 HOH HOH . 
IA 5 HOH D 18 518 143 HOH HOH . 
JA 5 HOH E 1 501 82 HOH HOH . 
JA 5 HOH E 2 502 87 HOH HOH . 
JA 5 HOH E 3 503 24 HOH HOH . 
JA 5 HOH E 4 504 138 HOH HOH . 
JA 5 HOH E 5 505 74 HOH HOH . 
JA 5 HOH E 6 506 19 HOH HOH . 
JA 5 HOH E 7 507 168 HOH HOH . 
JA 5 HOH E 8 508 163 HOH HOH . 
JA 5 HOH E 9 509 43 HOH HOH . 
JA 5 HOH E 10 510 128 HOH HOH . 
JA 5 HOH E 11 511 104 HOH HOH . 
JA 5 HOH E 12 512 183 HOH HOH . 
JA 5 HOH E 13 513 203 HOH HOH . 
JA 5 HOH E 14 514 126 HOH HOH . 
JA 5 HOH E 15 515 33 HOH HOH . 
JA 5 HOH E 16 516 49 HOH HOH . 
JA 5 HOH E 17 517 201 HOH HOH . 
JA 5 HOH E 18 518 191 HOH HOH . 
KA 5 HOH F 1 501 32 HOH HOH . 
KA 5 HOH F 2 502 34 HOH HOH . 
KA 5 HOH F 3 503 42 HOH HOH . 
KA 5 HOH F 4 504 202 HOH HOH . 
KA 5 HOH F 5 505 13 HOH HOH . 
KA 5 HOH F 6 506 14 HOH HOH . 
KA 5 HOH F 7 507 133 HOH HOH . 
KA 5 HOH F 8 508 132 HOH HOH . 
KA 5 HOH F 9 509 4 HOH HOH . 
KA 5 HOH F 10 510 115 HOH HOH . 
KA 5 HOH F 11 511 198 HOH HOH . 
KA 5 HOH F 12 512 147 HOH HOH . 
LA 5 HOH G 1 501 189 HOH HOH . 
LA 5 HOH G 2 502 47 HOH HOH . 
LA 5 HOH G 3 503 174 HOH HOH . 
LA 5 HOH G 4 504 64 HOH HOH . 
LA 5 HOH G 5 505 97 HOH HOH . 
LA 5 HOH G 6 506 69 HOH HOH . 
LA 5 HOH G 7 507 155 HOH HOH . 
LA 5 HOH G 8 508 192 HOH HOH . 
LA 5 HOH G 9 509 8 HOH HOH . 
LA 5 HOH G 10 510 67 HOH HOH . 
LA 5 HOH G 11 511 78 HOH HOH . 
LA 5 HOH G 12 512 105 HOH HOH . 
LA 5 HOH G 13 513 54 HOH HOH . 
LA 5 HOH G 14 514 41 HOH HOH . 
LA 5 HOH G 15 515 119 HOH HOH . 
LA 5 HOH G 16 516 121 HOH HOH . 
LA 5 HOH G 17 517 165 HOH HOH . 
LA 5 HOH G 18 518 144 HOH HOH . 
LA 5 HOH G 19 519 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . L 3 7.86 29.463 -12.988 1 63.34 ? C1 PEG 405 A 1 
HETATM 2 O O1 PEG . . . L 3 8.044 30.863 -13.232 1 66.59 ? O1 PEG 405 A 1 
HETATM 3 C C2 PEG . . . L 3 7.102 28.764 -14.097 1 73.81 ? C2 PEG 405 A 1 
HETATM 4 O O2 PEG . . . L 3 6.034 27.957 -13.562 1 74.14 ? O2 PEG 405 A 1 
HETATM 5 C C3 PEG . . . L 3 4.74 28.525 -13.764 1 76.03 ? C3 PEG 405 A 1 
HETATM 6 C C4 PEG . . . L 3 4.05 28.73 -12.444 1 70.41 ? C4 PEG 405 A 1 
HETATM 7 O O4 PEG . . . L 3 3.598 30.07 -12.262 1 71.38 ? O4 PEG 405 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           7 
#