data_8DSL # _model_server_result.job_id zD9Z30RREkbh5SMvOV-uWg _model_server_result.datetime_utc '2025-01-11 10:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8DSL # _exptl.entry_id 8DSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.03 _cell.angle_beta 89.79 _cell.angle_gamma 77.62 _cell.entry_id 8DSL _cell.length_a 39.166 _cell.length_b 53.535 _cell.length_c 86.139 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 47 1_555 A SG CYS 142 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? disulf ? disulf2 A SG CYS 37 A CYS 81 1_555 A SG CYS 82 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? disulf ? disulf3 A SG CYS 70 A CYS 114 1_555 A SG CYS 87 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? disulf ? disulf4 A SG CYS 183 A CYS 227 1_555 A SG CYS 290 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 249 A CYS 293 1_555 A SG CYS 271 A CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf6 B SG CYS 3 B CYS 47 1_555 B SG CYS 142 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 B SG CYS 37 B CYS 81 1_555 B SG CYS 82 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf8 B SG CYS 70 B CYS 114 1_555 B SG CYS 87 B CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? disulf ? disulf9 B SG CYS 183 B CYS 227 1_555 B SG CYS 290 B CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf10 B SG CYS 249 B CYS 293 1_555 B SG CYS 271 B CYS 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc1 A ND1 HIS 63 A HIS 107 1_555 D CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc2 A ND1 HIS 64 A HIS 108 1_555 D CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 A ND1 HIS 128 A HIS 172 1_555 D CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 A NE2 HIS 198 A HIS 242 1_555 C CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc5 A NE2 HIS 200 A HIS 244 1_555 C CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 A SD MET 270 A MET 314 1_555 C CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 B ND1 HIS 63 B HIS 107 1_555 F CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc8 B ND1 HIS 64 B HIS 108 1_555 F CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc9 B ND1 HIS 128 B HIS 172 1_555 F CU CU . B CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc10 B NE2 HIS 198 B HIS 242 1_555 G CU CU . B CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc11 B NE2 HIS 200 B HIS 244 1_555 G CU CU . B CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 B SD MET 270 B MET 314 1_555 G CU CU . B CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DSL _atom_sites.fract_transf_matrix[1][1] 0.025532 _atom_sites.fract_transf_matrix[1][2] -0.005602 _atom_sites.fract_transf_matrix[1][3] 0.0004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019124 _atom_sites.fract_transf_matrix[2][3] -0.001687 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 401 401 CU CU . D 2 CU A 1 402 402 CU CU . E 3 GOL A 1 403 403 GOL GOL . F 2 CU B 1 401 401 CU CU . G 2 CU B 1 402 402 CU CU . H 3 GOL B 1 403 403 GOL GOL . I 4 HOH A 1 502 116 HOH HOH . I 4 HOH A 2 503 83 HOH HOH . I 4 HOH A 3 504 58 HOH HOH . I 4 HOH A 4 505 8 HOH HOH . I 4 HOH A 5 506 129 HOH HOH . I 4 HOH A 6 507 13 HOH HOH . I 4 HOH A 7 508 30 HOH HOH . I 4 HOH A 8 509 67 HOH HOH . I 4 HOH A 9 510 75 HOH HOH . I 4 HOH A 10 511 40 HOH HOH . I 4 HOH A 11 512 7 HOH HOH . I 4 HOH A 12 513 79 HOH HOH . I 4 HOH A 13 514 16 HOH HOH . I 4 HOH A 14 515 49 HOH HOH . I 4 HOH A 15 516 42 HOH HOH . I 4 HOH A 16 517 94 HOH HOH . I 4 HOH A 17 518 82 HOH HOH . I 4 HOH A 18 519 77 HOH HOH . I 4 HOH A 19 520 3 HOH HOH . I 4 HOH A 20 521 97 HOH HOH . I 4 HOH A 21 522 37 HOH HOH . I 4 HOH A 22 523 59 HOH HOH . I 4 HOH A 23 524 64 HOH HOH . I 4 HOH A 24 525 98 HOH HOH . I 4 HOH A 25 526 80 HOH HOH . I 4 HOH A 26 527 90 HOH HOH . I 4 HOH A 27 528 44 HOH HOH . I 4 HOH A 28 529 108 HOH HOH . I 4 HOH A 29 530 133 HOH HOH . I 4 HOH A 30 531 124 HOH HOH . I 4 HOH A 31 532 28 HOH HOH . I 4 HOH A 32 533 26 HOH HOH . I 4 HOH A 33 534 32 HOH HOH . I 4 HOH A 34 535 72 HOH HOH . I 4 HOH A 35 536 74 HOH HOH . I 4 HOH A 36 537 71 HOH HOH . I 4 HOH A 37 538 70 HOH HOH . I 4 HOH A 38 539 39 HOH HOH . I 4 HOH A 39 540 78 HOH HOH . I 4 HOH A 40 541 24 HOH HOH . I 4 HOH A 41 542 29 HOH HOH . I 4 HOH A 42 543 21 HOH HOH . I 4 HOH A 43 544 5 HOH HOH . I 4 HOH A 44 545 131 HOH HOH . I 4 HOH A 45 546 1 HOH HOH . I 4 HOH A 46 547 22 HOH HOH . I 4 HOH A 47 548 101 HOH HOH . I 4 HOH A 48 549 60 HOH HOH . I 4 HOH A 49 550 45 HOH HOH . I 4 HOH A 50 551 104 HOH HOH . I 4 HOH A 51 552 31 HOH HOH . I 4 HOH A 52 553 96 HOH HOH . I 4 HOH A 53 554 6 HOH HOH . I 4 HOH A 54 555 14 HOH HOH . I 4 HOH A 55 556 99 HOH HOH . I 4 HOH A 56 557 95 HOH HOH . I 4 HOH A 57 558 47 HOH HOH . I 4 HOH A 58 559 66 HOH HOH . I 4 HOH A 59 560 18 HOH HOH . I 4 HOH A 60 561 19 HOH HOH . I 4 HOH A 61 562 93 HOH HOH . I 4 HOH A 62 563 86 HOH HOH . I 4 HOH A 63 564 107 HOH HOH . I 4 HOH A 64 565 41 HOH HOH . I 4 HOH A 65 566 102 HOH HOH . I 4 HOH A 66 567 56 HOH HOH . I 4 HOH A 67 568 109 HOH HOH . I 4 HOH A 68 569 137 HOH HOH . I 4 HOH A 69 570 130 HOH HOH . I 4 HOH A 70 571 117 HOH HOH . J 4 HOH B 1 501 85 HOH HOH . J 4 HOH B 2 502 38 HOH HOH . J 4 HOH B 3 503 69 HOH HOH . J 4 HOH B 4 504 65 HOH HOH . J 4 HOH B 5 505 114 HOH HOH . J 4 HOH B 6 506 9 HOH HOH . J 4 HOH B 7 507 10 HOH HOH . J 4 HOH B 8 508 25 HOH HOH . J 4 HOH B 9 509 12 HOH HOH . J 4 HOH B 10 510 34 HOH HOH . J 4 HOH B 11 511 76 HOH HOH . J 4 HOH B 12 512 27 HOH HOH . J 4 HOH B 13 513 23 HOH HOH . J 4 HOH B 14 514 17 HOH HOH . J 4 HOH B 15 515 73 HOH HOH . J 4 HOH B 16 516 84 HOH HOH . J 4 HOH B 17 517 52 HOH HOH . J 4 HOH B 18 518 127 HOH HOH . J 4 HOH B 19 519 33 HOH HOH . J 4 HOH B 20 520 36 HOH HOH . J 4 HOH B 21 521 88 HOH HOH . J 4 HOH B 22 522 91 HOH HOH . J 4 HOH B 23 523 57 HOH HOH . J 4 HOH B 24 524 15 HOH HOH . J 4 HOH B 25 525 62 HOH HOH . J 4 HOH B 26 526 113 HOH HOH . J 4 HOH B 27 527 111 HOH HOH . J 4 HOH B 28 528 110 HOH HOH . J 4 HOH B 29 529 43 HOH HOH . J 4 HOH B 30 530 53 HOH HOH . J 4 HOH B 31 531 87 HOH HOH . J 4 HOH B 32 532 20 HOH HOH . J 4 HOH B 33 533 68 HOH HOH . J 4 HOH B 34 534 119 HOH HOH . J 4 HOH B 35 535 106 HOH HOH . J 4 HOH B 36 536 46 HOH HOH . J 4 HOH B 37 537 55 HOH HOH . J 4 HOH B 38 538 51 HOH HOH . J 4 HOH B 39 539 123 HOH HOH . J 4 HOH B 40 540 121 HOH HOH . J 4 HOH B 41 541 54 HOH HOH . J 4 HOH B 42 542 112 HOH HOH . J 4 HOH B 43 543 125 HOH HOH . J 4 HOH B 44 544 120 HOH HOH . J 4 HOH B 45 545 81 HOH HOH . J 4 HOH B 46 546 2 HOH HOH . J 4 HOH B 47 547 115 HOH HOH . J 4 HOH B 48 548 48 HOH HOH . J 4 HOH B 49 549 11 HOH HOH . J 4 HOH B 50 550 100 HOH HOH . J 4 HOH B 51 551 136 HOH HOH . J 4 HOH B 52 552 128 HOH HOH . J 4 HOH B 53 553 103 HOH HOH . J 4 HOH B 54 554 92 HOH HOH . J 4 HOH B 55 555 105 HOH HOH . J 4 HOH B 56 556 134 HOH HOH . J 4 HOH B 57 557 50 HOH HOH . J 4 HOH B 58 558 135 HOH HOH . J 4 HOH B 59 559 118 HOH HOH . J 4 HOH B 60 560 132 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.725 _atom_site.Cartn_y -1.462 _atom_site.Cartn_z 12.973 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 94.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #