data_8DSM
#
_model_server_result.job_id            BwvcWVmYzChBrZuHnL0hYg 
_model_server_result.datetime_utc      '2024-10-10 16:25:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dsm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    8DSM 
#
_exptl.entry_id    8DSM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              658.835 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-N-[(1-benzothiophen-5-yl)methyl]-1-[6-(4-{2-[(2E)-3-(pyridin-3-yl)prop-2-enamido]ethyl}phenyl)thieno[2,3-d]pyrimidin-4-yl]piperidine-3-carboxamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DSM 
_cell.length_a            87.991 
_cell.length_b            94.424 
_cell.length_c            246.445 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DSM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,S,T 1 1 
C,D,L,M,N,O,P,Q,R,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 J N N 
? 2 L N N 
? 2 O N N 
#
_chem_comp.formula           'C37 H34 N6 O2 S2' 
_chem_comp.formula_weight    658.835 
_chem_comp.id                TK0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-N-[(1-benzothiophen-5-yl)methyl]-1-[6-(4-{2-[(2E)-3-(pyridin-3-yl)prop-2-enamido]ethyl}phenyl)thieno[2,3-d]pyrimidin-4-yl]piperidine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N29 C28 TK0 doub 323 n y 
N29 C30 TK0 sing 324 n y 
C28 C27 TK0 sing 325 n y 
C30 C31 TK0 doub 326 n y 
C27 C26 TK0 sing 327 n n 
C27 C32 TK0 doub 328 n y 
O33 C24 TK0 doub 329 n n 
C25 C26 TK0 doub 330 e n 
C25 C24 TK0 sing 331 n n 
C31 C32 TK0 sing 332 n y 
C24 N23 TK0 sing 333 n n 
N23 C22 TK0 sing 334 n n 
C22 C21 TK0 sing 335 n n 
C46 C45 TK0 doub 336 n y 
C46 S47 TK0 sing 337 n y 
C21 C18 TK0 sing 338 n n 
C45 C43 TK0 sing 339 n y 
S47 C42 TK0 sing 340 n y 
C18 C19 TK0 doub 341 n y 
C18 C17 TK0 sing 342 n y 
C43 C42 TK0 doub 343 n y 
C43 C44 TK0 sing 344 n y 
C19 C20 TK0 sing 345 n y 
C42 C41 TK0 sing 346 n y 
C17 C16 TK0 doub 347 n y 
C44 C39 TK0 doub 348 n y 
C20 C15 TK0 doub 349 n y 
C16 C15 TK0 sing 350 n y 
C41 C40 TK0 doub 351 n y 
C15 C14 TK0 sing 352 n n 
C39 C40 TK0 sing 353 n y 
C39 C38 TK0 sing 354 n n 
S34 C14 TK0 sing 355 n y 
S34 C11 TK0 sing 356 n y 
C14 C13 TK0 doub 357 n y 
C38 N37 TK0 sing 358 n n 
C11 N10 TK0 doub 359 n y 
C11 C12 TK0 sing 360 n y 
N10 C09 TK0 sing 361 n y 
C13 C12 TK0 sing 362 n y 
N37 C35 TK0 sing 363 n n 
C12 C07 TK0 doub 364 n y 
C09 N08 TK0 doub 365 n y 
O36 C35 TK0 doub 366 n n 
C35 C02 TK0 sing 367 n n 
C07 N08 TK0 sing 368 n y 
C07 N04 TK0 sing 369 n n 
C06 C05 TK0 sing 370 n n 
C06 C01 TK0 sing 371 n n 
C02 C01 TK0 sing 372 n n 
C02 C03 TK0 sing 373 n n 
C05 N04 TK0 sing 374 n n 
N04 C03 TK0 sing 375 n n 
C01 H1 TK0 sing 376 n n 
C01 H2 TK0 sing 377 n n 
C02 H3 TK0 sing 378 n n 
C03 H4 TK0 sing 379 n n 
C03 H5 TK0 sing 380 n n 
C05 H6 TK0 sing 381 n n 
C05 H7 TK0 sing 382 n n 
C06 H8 TK0 sing 383 n n 
C06 H9 TK0 sing 384 n n 
C09 H10 TK0 sing 385 n n 
C13 H11 TK0 sing 386 n n 
C16 H12 TK0 sing 387 n n 
C17 H13 TK0 sing 388 n n 
C19 H14 TK0 sing 389 n n 
C20 H15 TK0 sing 390 n n 
C21 H16 TK0 sing 391 n n 
C21 H17 TK0 sing 392 n n 
C22 H18 TK0 sing 393 n n 
C22 H19 TK0 sing 394 n n 
C25 H20 TK0 sing 395 n n 
C26 H21 TK0 sing 396 n n 
C28 H22 TK0 sing 397 n n 
C30 H23 TK0 sing 398 n n 
C31 H24 TK0 sing 399 n n 
C32 H25 TK0 sing 400 n n 
C38 H26 TK0 sing 401 n n 
C38 H27 TK0 sing 402 n n 
C40 H28 TK0 sing 403 n n 
C41 H29 TK0 sing 404 n n 
C44 H30 TK0 sing 405 n n 
C45 H31 TK0 sing 406 n n 
C46 H32 TK0 sing 407 n n 
N23 H33 TK0 sing 408 n n 
N37 H34 TK0 sing 409 n n 
#
_atom_sites.entry_id                     8DSM 
_atom_sites.fract_transf_matrix[1][1]    0.011365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TK0 A 1 501 501 TK0 43I . 
F 3 PO4 A 1 502 1101 PO4 PO4 . 
G 4 CL A 1 503 1103 CL CL . 
H 4 CL A 1 504 1202 CL CL . 
I 5 GOL A 1 505 1303 GOL GOL . 
J 2 TK0 B 1 501 501 TK0 43I . 
K 3 PO4 B 1 502 1201 PO4 PO4 . 
L 2 TK0 C 1 501 501 TK0 43I . 
M 3 PO4 C 1 502 1101 PO4 PO4 . 
N 4 CL C 1 503 1102 CL CL . 
O 2 TK0 D 1 501 501 TK0 43I . 
P 3 PO4 D 1 502 1201 PO4 PO4 . 
Q 5 GOL D 1 503 1301 GOL GOL . 
R 5 GOL D 1 504 1302 GOL GOL . 
S 6 HOH A 1 601 30 HOH HOH . 
S 6 HOH A 2 602 103 HOH HOH . 
S 6 HOH A 3 603 131 HOH HOH . 
S 6 HOH A 4 604 25 HOH HOH . 
S 6 HOH A 5 605 49 HOH HOH . 
S 6 HOH A 6 606 16 HOH HOH . 
S 6 HOH A 7 607 9 HOH HOH . 
S 6 HOH A 8 608 11 HOH HOH . 
S 6 HOH A 9 609 1 HOH HOH . 
S 6 HOH A 10 610 120 HOH HOH . 
S 6 HOH A 11 611 86 HOH HOH . 
S 6 HOH A 12 612 29 HOH HOH . 
S 6 HOH A 13 613 35 HOH HOH . 
S 6 HOH A 14 614 43 HOH HOH . 
S 6 HOH A 15 615 46 HOH HOH . 
S 6 HOH A 16 616 42 HOH HOH . 
S 6 HOH A 17 617 72 HOH HOH . 
S 6 HOH A 18 618 34 HOH HOH . 
S 6 HOH A 19 619 107 HOH HOH . 
S 6 HOH A 20 620 93 HOH HOH . 
S 6 HOH A 21 621 71 HOH HOH . 
S 6 HOH A 22 622 80 HOH HOH . 
S 6 HOH A 23 623 130 HOH HOH . 
S 6 HOH A 24 624 114 HOH HOH . 
S 6 HOH A 25 625 127 HOH HOH . 
T 6 HOH B 1 601 84 HOH HOH . 
T 6 HOH B 2 602 111 HOH HOH . 
T 6 HOH B 3 603 119 HOH HOH . 
T 6 HOH B 4 604 121 HOH HOH . 
T 6 HOH B 5 605 59 HOH HOH . 
T 6 HOH B 6 606 19 HOH HOH . 
T 6 HOH B 7 607 75 HOH HOH . 
T 6 HOH B 8 608 98 HOH HOH . 
T 6 HOH B 9 609 95 HOH HOH . 
T 6 HOH B 10 610 56 HOH HOH . 
T 6 HOH B 11 611 87 HOH HOH . 
T 6 HOH B 12 612 118 HOH HOH . 
T 6 HOH B 13 613 124 HOH HOH . 
T 6 HOH B 14 614 67 HOH HOH . 
T 6 HOH B 15 615 63 HOH HOH . 
U 6 HOH C 1 601 45 HOH HOH . 
U 6 HOH C 2 602 5 HOH HOH . 
U 6 HOH C 3 603 70 HOH HOH . 
U 6 HOH C 4 604 31 HOH HOH . 
U 6 HOH C 5 605 65 HOH HOH . 
U 6 HOH C 6 606 83 HOH HOH . 
U 6 HOH C 7 607 39 HOH HOH . 
U 6 HOH C 8 608 94 HOH HOH . 
V 6 HOH D 1 601 64 HOH HOH . 
V 6 HOH D 2 602 113 HOH HOH . 
V 6 HOH D 3 603 62 HOH HOH . 
V 6 HOH D 4 604 36 HOH HOH . 
V 6 HOH D 5 605 6 HOH HOH . 
V 6 HOH D 6 606 3 HOH HOH . 
V 6 HOH D 7 607 54 HOH HOH . 
V 6 HOH D 8 608 40 HOH HOH . 
V 6 HOH D 9 609 52 HOH HOH . 
V 6 HOH D 10 610 76 HOH HOH . 
V 6 HOH D 11 611 123 HOH HOH . 
V 6 HOH D 12 612 37 HOH HOH . 
V 6 HOH D 13 613 28 HOH HOH . 
V 6 HOH D 14 614 112 HOH HOH . 
V 6 HOH D 15 615 58 HOH HOH . 
V 6 HOH D 16 616 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 TK0 . . . J 2 60.413 2.953 18.652 1 56.71 ? C01 TK0 501 B 1 
HETATM 2 C C02 TK0 . . . J 2 61.276 1.756 18.263 1 65.05 ? C02 TK0 501 B 1 
HETATM 3 C C03 TK0 . . . J 2 60.444 0.485 18.562 1 58.71 ? C03 TK0 501 B 1 
HETATM 4 C C05 TK0 . . . J 2 58.39 1.568 17.873 1 48.76 ? C05 TK0 501 B 1 
HETATM 5 C C06 TK0 . . . J 2 59.097 2.947 17.892 1 54.57 ? C06 TK0 501 B 1 
HETATM 6 C C07 TK0 . . . J 2 58.886 -0.704 16.798 1 60.29 ? C07 TK0 501 B 1 
HETATM 7 C C09 TK0 . . . J 2 58.996 -3.03 16.299 1 60.27 ? C09 TK0 501 B 1 
HETATM 8 C C11 TK0 . . . J 2 57.608 -1.743 15.035 1 53 ? C11 TK0 501 B 1 
HETATM 9 C C12 TK0 . . . J 2 57.928 -0.586 15.717 1 54.89 ? C12 TK0 501 B 1 
HETATM 10 C C13 TK0 . . . J 2 57.199 0.57 15.177 1 56.43 ? C13 TK0 501 B 1 
HETATM 11 C C14 TK0 . . . J 2 56.322 0.376 14.113 1 53.78 ? C14 TK0 501 B 1 
HETATM 12 C C15 TK0 . . . J 2 55.433 1.299 13.323 1 59.47 ? C15 TK0 501 B 1 
HETATM 13 C C16 TK0 . . . J 2 54.252 0.917 12.641 1 60.3 ? C16 TK0 501 B 1 
HETATM 14 C C17 TK0 . . . J 2 53.438 1.828 11.911 1 57.33 ? C17 TK0 501 B 1 
HETATM 15 C C18 TK0 . . . J 2 53.744 3.194 11.791 1 52.19 ? C18 TK0 501 B 1 
HETATM 16 C C19 TK0 . . . J 2 54.897 3.571 12.458 1 57.84 ? C19 TK0 501 B 1 
HETATM 17 C C20 TK0 . . . J 2 55.697 2.665 13.182 1 58.69 ? C20 TK0 501 B 1 
HETATM 18 C C21 TK0 . . . J 2 52.881 4.198 11.015 1 55.37 ? C21 TK0 501 B 1 
HETATM 19 C C22 TK0 . . . J 2 52.947 4.165 9.459 1 52.33 ? C22 TK0 501 B 1 
HETATM 20 C C24 TK0 . . . J 2 51.46 4.249 7.388 1 50.05 ? C24 TK0 501 B 1 
HETATM 21 C C25 TK0 . . . J 2 50.111 4.357 6.745 1 48.79 ? C25 TK0 501 B 1 
HETATM 22 C C26 TK0 . . . J 2 49.076 5.027 7.307 1 40.89 ? C26 TK0 501 B 1 
HETATM 23 C C27 TK0 . . . J 2 47.678 5.173 6.823 1 40.45 ? C27 TK0 501 B 1 
HETATM 24 C C28 TK0 . . . J 2 47.256 4.655 5.592 1 38.24 ? C28 TK0 501 B 1 
HETATM 25 C C30 TK0 . . . J 2 45.046 5.334 5.84 1 44.36 ? C30 TK0 501 B 1 
HETATM 26 C C31 TK0 . . . J 2 45.342 5.874 7.091 1 44.72 ? C31 TK0 501 B 1 
HETATM 27 C C32 TK0 . . . J 2 46.655 5.777 7.566 1 43.5 ? C32 TK0 501 B 1 
HETATM 28 C C35 TK0 . . . J 2 61.653 1.777 16.784 1 68.12 ? C35 TK0 501 B 1 
HETATM 29 C C38 TK0 . . . J 2 61.294 2.382 14.306 1 65.06 ? C38 TK0 501 B 1 
HETATM 30 C C39 TK0 . . . J 2 60.682 1.156 13.531 1 57.29 ? C39 TK0 501 B 1 
HETATM 31 C C40 TK0 . . . J 2 61.14 -0.161 13.755 1 59.98 ? C40 TK0 501 B 1 
HETATM 32 C C41 TK0 . . . J 2 60.591 -1.255 13.071 1 60.45 ? C41 TK0 501 B 1 
HETATM 33 C C42 TK0 . . . J 2 59.569 -1.027 12.155 1 57.95 ? C42 TK0 501 B 1 
HETATM 34 C C43 TK0 . . . J 2 59.083 0.232 11.9 1 55.78 ? C43 TK0 501 B 1 
HETATM 35 C C44 TK0 . . . J 2 59.643 1.326 12.595 1 51.89 ? C44 TK0 501 B 1 
HETATM 36 C C45 TK0 . . . J 2 58.008 0.282 10.909 1 57.86 ? C45 TK0 501 B 1 
HETATM 37 C C46 TK0 . . . J 2 57.693 -0.986 10.414 1 55.79 ? C46 TK0 501 B 1 
HETATM 38 N N04 TK0 . . . J 2 59.317 0.439 17.607 1 57.82 ? N04 TK0 501 B 1 
HETATM 39 N N08 TK0 . . . J 2 59.394 -1.946 17.05 1 60.83 ? N08 TK0 501 B 1 
HETATM 40 N N10 TK0 . . . J 2 58.104 -2.977 15.277 1 60.07 ? N10 TK0 501 B 1 
HETATM 41 N N23 TK0 . . . J 2 51.666 4.283 8.783 1 45.36 ? N23 TK0 501 B 1 
HETATM 42 N N29 TK0 . . . J 2 46 4.733 5.107 1 42.3 ? N29 TK0 501 B 1 
HETATM 43 N N37 TK0 . . . J 2 60.959 2.39 15.745 1 62.85 ? N37 TK0 501 B 1 
HETATM 44 O O33 TK0 . . . J 2 52.467 4.092 6.68 1 53.69 ? O33 TK0 501 B 1 
HETATM 45 O O36 TK0 . . . J 2 62.686 1.155 16.467 1 71.31 ? O36 TK0 501 B 1 
HETATM 46 S S34 TK0 . . . J 2 56.428 -1.358 13.775 1 63.94 ? S34 TK0 501 B 1 
HETATM 47 S S47 TK0 . . . J 2 58.692 -2.163 11.163 1 68.08 ? S47 TK0 501 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           47 
#