data_8DSM
#
_model_server_result.job_id            NUmjrrl3sG3df1KR17h0aA 
_model_server_result.datetime_utc      '2024-10-10 16:24:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dsm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":505}' 
#
_entry.id    8DSM 
#
_exptl.entry_id    8DSM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DSM 
_cell.length_a            87.991 
_cell.length_b            94.424 
_cell.length_c            246.445 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DSM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,S,T 1 1 
C,D,L,M,N,O,P,Q,R,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 Q N N 
? 5 R N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8DSM 
_atom_sites.fract_transf_matrix[1][1]    0.011365 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010591 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004058 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TK0 A 1 501 501 TK0 43I . 
F 3 PO4 A 1 502 1101 PO4 PO4 . 
G 4 CL A 1 503 1103 CL CL . 
H 4 CL A 1 504 1202 CL CL . 
I 5 GOL A 1 505 1303 GOL GOL . 
J 2 TK0 B 1 501 501 TK0 43I . 
K 3 PO4 B 1 502 1201 PO4 PO4 . 
L 2 TK0 C 1 501 501 TK0 43I . 
M 3 PO4 C 1 502 1101 PO4 PO4 . 
N 4 CL C 1 503 1102 CL CL . 
O 2 TK0 D 1 501 501 TK0 43I . 
P 3 PO4 D 1 502 1201 PO4 PO4 . 
Q 5 GOL D 1 503 1301 GOL GOL . 
R 5 GOL D 1 504 1302 GOL GOL . 
S 6 HOH A 1 601 30 HOH HOH . 
S 6 HOH A 2 602 103 HOH HOH . 
S 6 HOH A 3 603 131 HOH HOH . 
S 6 HOH A 4 604 25 HOH HOH . 
S 6 HOH A 5 605 49 HOH HOH . 
S 6 HOH A 6 606 16 HOH HOH . 
S 6 HOH A 7 607 9 HOH HOH . 
S 6 HOH A 8 608 11 HOH HOH . 
S 6 HOH A 9 609 1 HOH HOH . 
S 6 HOH A 10 610 120 HOH HOH . 
S 6 HOH A 11 611 86 HOH HOH . 
S 6 HOH A 12 612 29 HOH HOH . 
S 6 HOH A 13 613 35 HOH HOH . 
S 6 HOH A 14 614 43 HOH HOH . 
S 6 HOH A 15 615 46 HOH HOH . 
S 6 HOH A 16 616 42 HOH HOH . 
S 6 HOH A 17 617 72 HOH HOH . 
S 6 HOH A 18 618 34 HOH HOH . 
S 6 HOH A 19 619 107 HOH HOH . 
S 6 HOH A 20 620 93 HOH HOH . 
S 6 HOH A 21 621 71 HOH HOH . 
S 6 HOH A 22 622 80 HOH HOH . 
S 6 HOH A 23 623 130 HOH HOH . 
S 6 HOH A 24 624 114 HOH HOH . 
S 6 HOH A 25 625 127 HOH HOH . 
T 6 HOH B 1 601 84 HOH HOH . 
T 6 HOH B 2 602 111 HOH HOH . 
T 6 HOH B 3 603 119 HOH HOH . 
T 6 HOH B 4 604 121 HOH HOH . 
T 6 HOH B 5 605 59 HOH HOH . 
T 6 HOH B 6 606 19 HOH HOH . 
T 6 HOH B 7 607 75 HOH HOH . 
T 6 HOH B 8 608 98 HOH HOH . 
T 6 HOH B 9 609 95 HOH HOH . 
T 6 HOH B 10 610 56 HOH HOH . 
T 6 HOH B 11 611 87 HOH HOH . 
T 6 HOH B 12 612 118 HOH HOH . 
T 6 HOH B 13 613 124 HOH HOH . 
T 6 HOH B 14 614 67 HOH HOH . 
T 6 HOH B 15 615 63 HOH HOH . 
U 6 HOH C 1 601 45 HOH HOH . 
U 6 HOH C 2 602 5 HOH HOH . 
U 6 HOH C 3 603 70 HOH HOH . 
U 6 HOH C 4 604 31 HOH HOH . 
U 6 HOH C 5 605 65 HOH HOH . 
U 6 HOH C 6 606 83 HOH HOH . 
U 6 HOH C 7 607 39 HOH HOH . 
U 6 HOH C 8 608 94 HOH HOH . 
V 6 HOH D 1 601 64 HOH HOH . 
V 6 HOH D 2 602 113 HOH HOH . 
V 6 HOH D 3 603 62 HOH HOH . 
V 6 HOH D 4 604 36 HOH HOH . 
V 6 HOH D 5 605 6 HOH HOH . 
V 6 HOH D 6 606 3 HOH HOH . 
V 6 HOH D 7 607 54 HOH HOH . 
V 6 HOH D 8 608 40 HOH HOH . 
V 6 HOH D 9 609 52 HOH HOH . 
V 6 HOH D 10 610 76 HOH HOH . 
V 6 HOH D 11 611 123 HOH HOH . 
V 6 HOH D 12 612 37 HOH HOH . 
V 6 HOH D 13 613 28 HOH HOH . 
V 6 HOH D 14 614 112 HOH HOH . 
V 6 HOH D 15 615 58 HOH HOH . 
V 6 HOH D 16 616 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 35.78 12.439 17.366 1 55.28 ? C1 GOL 505 A 1 
HETATM 2 O O1 GOL . . . I 5 35.223 12.185 16.074 1 50.8 ? O1 GOL 505 A 1 
HETATM 3 C C2 GOL . . . I 5 36.527 13.841 17.333 1 61.93 ? C2 GOL 505 A 1 
HETATM 4 O O2 GOL . . . I 5 36.006 14.784 18.262 1 62.45 ? O2 GOL 505 A 1 
HETATM 5 C C3 GOL . . . I 5 38.059 13.517 17.59 1 60 ? C3 GOL 505 A 1 
HETATM 6 O O3 GOL . . . I 5 38.368 13.823 18.952 1 61.98 ? O3 GOL 505 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#