data_8DSV # _model_server_result.job_id Ax-GSxpbpQrfAef4fHBS4g _model_server_result.datetime_utc '2024-11-16 22:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 8DSV # _exptl.entry_id 8DSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.216 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methylmyosmine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DSV _cell.length_a 75.08 _cell.length_b 86.7 _cell.length_c 152.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 N2' _chem_comp.formula_weight 160.216 _chem_comp.id TXU _chem_comp.mon_nstd_flag . _chem_comp.name N-methylmyosmine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 TXU sing 473 n n C7 C6 TXU doub 474 n n C8 C9 TXU sing 475 n n C6 C2 TXU sing 476 n n C6 N2 TXU sing 477 n n C1 C2 TXU doub 478 n y C1 N1 TXU sing 479 n y C2 C3 TXU sing 480 n y N1 C5 TXU doub 481 n y C9 N2 TXU sing 482 n n C3 C4 TXU doub 483 n y C5 C4 TXU sing 484 n y N2 C10 TXU sing 485 n n C1 HC1 TXU sing 486 n n C3 HC3 TXU sing 487 n n C4 HC4 TXU sing 488 n n C5 HC5 TXU sing 489 n n C7 HC71 TXU sing 490 n n C8 HC82 TXU sing 491 n n C8 HC81 TXU sing 492 n n C9 HC91 TXU sing 493 n n C9 HC92 TXU sing 494 n n C10 H101 TXU sing 495 n n C10 H103 TXU sing 496 n n C10 H102 TXU sing 497 n n # _atom_sites.entry_id 8DSV _atom_sites.fract_transf_matrix[1][1] 0.013319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FDA A 1 501 501 FDA FDA . D 3 PG4 A 1 502 502 PG4 PG4 . E 3 PG4 A 1 503 503 PG4 PG4 . F 2 FDA B 1 501 503 FDA FDA . G 4 PEG B 1 502 504 PEG PEG . H 5 TXU B 1 503 505 TXU NMM . I 6 HOH A 1 601 297 HOH HOH . I 6 HOH A 2 602 225 HOH HOH . I 6 HOH A 3 603 138 HOH HOH . I 6 HOH A 4 604 79 HOH HOH . I 6 HOH A 5 605 203 HOH HOH . I 6 HOH A 6 606 231 HOH HOH . I 6 HOH A 7 607 293 HOH HOH . I 6 HOH A 8 608 10 HOH HOH . I 6 HOH A 9 609 241 HOH HOH . I 6 HOH A 10 610 175 HOH HOH . I 6 HOH A 11 611 272 HOH HOH . I 6 HOH A 12 612 19 HOH HOH . I 6 HOH A 13 613 228 HOH HOH . I 6 HOH A 14 614 229 HOH HOH . I 6 HOH A 15 615 171 HOH HOH . I 6 HOH A 16 616 220 HOH HOH . I 6 HOH A 17 617 50 HOH HOH . I 6 HOH A 18 618 46 HOH HOH . I 6 HOH A 19 619 181 HOH HOH . I 6 HOH A 20 620 92 HOH HOH . I 6 HOH A 21 621 57 HOH HOH . I 6 HOH A 22 622 168 HOH HOH . I 6 HOH A 23 623 264 HOH HOH . I 6 HOH A 24 624 41 HOH HOH . I 6 HOH A 25 625 60 HOH HOH . I 6 HOH A 26 626 26 HOH HOH . I 6 HOH A 27 627 56 HOH HOH . I 6 HOH A 28 628 219 HOH HOH . I 6 HOH A 29 629 134 HOH HOH . I 6 HOH A 30 630 53 HOH HOH . I 6 HOH A 31 631 75 HOH HOH . I 6 HOH A 32 632 62 HOH HOH . I 6 HOH A 33 633 299 HOH HOH . I 6 HOH A 34 634 298 HOH HOH . I 6 HOH A 35 635 103 HOH HOH . I 6 HOH A 36 636 104 HOH HOH . I 6 HOH A 37 637 13 HOH HOH . I 6 HOH A 38 638 124 HOH HOH . I 6 HOH A 39 639 180 HOH HOH . I 6 HOH A 40 640 9 HOH HOH . I 6 HOH A 41 641 40 HOH HOH . I 6 HOH A 42 642 11 HOH HOH . I 6 HOH A 43 643 1 HOH HOH . I 6 HOH A 44 644 260 HOH HOH . I 6 HOH A 45 645 169 HOH HOH . I 6 HOH A 46 646 230 HOH HOH . I 6 HOH A 47 647 71 HOH HOH . I 6 HOH A 48 648 42 HOH HOH . I 6 HOH A 49 649 131 HOH HOH . I 6 HOH A 50 650 36 HOH HOH . I 6 HOH A 51 651 164 HOH HOH . I 6 HOH A 52 652 277 HOH HOH . I 6 HOH A 53 653 49 HOH HOH . I 6 HOH A 54 654 59 HOH HOH . I 6 HOH A 55 655 198 HOH HOH . I 6 HOH A 56 656 278 HOH HOH . I 6 HOH A 57 657 97 HOH HOH . I 6 HOH A 58 658 6 HOH HOH . I 6 HOH A 59 659 5 HOH HOH . I 6 HOH A 60 660 153 HOH HOH . I 6 HOH A 61 661 187 HOH HOH . I 6 HOH A 62 662 140 HOH HOH . I 6 HOH A 63 663 37 HOH HOH . I 6 HOH A 64 664 29 HOH HOH . I 6 HOH A 65 665 87 HOH HOH . I 6 HOH A 66 666 84 HOH HOH . I 6 HOH A 67 667 215 HOH HOH . I 6 HOH A 68 668 106 HOH HOH . I 6 HOH A 69 669 292 HOH HOH . I 6 HOH A 70 670 102 HOH HOH . I 6 HOH A 71 671 111 HOH HOH . I 6 HOH A 72 672 67 HOH HOH . I 6 HOH A 73 673 262 HOH HOH . I 6 HOH A 74 674 127 HOH HOH . I 6 HOH A 75 675 162 HOH HOH . I 6 HOH A 76 676 109 HOH HOH . I 6 HOH A 77 677 141 HOH HOH . I 6 HOH A 78 678 114 HOH HOH . I 6 HOH A 79 679 118 HOH HOH . I 6 HOH A 80 680 227 HOH HOH . I 6 HOH A 81 681 117 HOH HOH . I 6 HOH A 82 682 226 HOH HOH . I 6 HOH A 83 683 119 HOH HOH . I 6 HOH A 84 684 247 HOH HOH . I 6 HOH A 85 685 24 HOH HOH . I 6 HOH A 86 686 48 HOH HOH . I 6 HOH A 87 687 82 HOH HOH . I 6 HOH A 88 688 72 HOH HOH . I 6 HOH A 89 689 47 HOH HOH . I 6 HOH A 90 690 158 HOH HOH . I 6 HOH A 91 691 211 HOH HOH . I 6 HOH A 92 692 146 HOH HOH . I 6 HOH A 93 693 267 HOH HOH . I 6 HOH A 94 694 80 HOH HOH . I 6 HOH A 95 695 35 HOH HOH . I 6 HOH A 96 696 205 HOH HOH . I 6 HOH A 97 697 173 HOH HOH . I 6 HOH A 98 698 191 HOH HOH . I 6 HOH A 99 699 128 HOH HOH . I 6 HOH A 100 700 157 HOH HOH . I 6 HOH A 101 701 170 HOH HOH . I 6 HOH A 102 702 148 HOH HOH . I 6 HOH A 103 703 213 HOH HOH . I 6 HOH A 104 704 147 HOH HOH . I 6 HOH A 105 705 246 HOH HOH . I 6 HOH A 106 706 165 HOH HOH . I 6 HOH A 107 707 115 HOH HOH . I 6 HOH A 108 708 101 HOH HOH . I 6 HOH A 109 709 210 HOH HOH . I 6 HOH A 110 710 190 HOH HOH . I 6 HOH A 111 711 271 HOH HOH . I 6 HOH A 112 712 259 HOH HOH . I 6 HOH A 113 713 248 HOH HOH . I 6 HOH A 114 714 121 HOH HOH . I 6 HOH A 115 715 274 HOH HOH . I 6 HOH A 116 716 167 HOH HOH . I 6 HOH A 117 717 245 HOH HOH . I 6 HOH A 118 718 268 HOH HOH . I 6 HOH A 119 719 136 HOH HOH . I 6 HOH A 120 720 122 HOH HOH . I 6 HOH A 121 721 257 HOH HOH . I 6 HOH A 122 722 238 HOH HOH . I 6 HOH A 123 723 208 HOH HOH . I 6 HOH A 124 724 217 HOH HOH . I 6 HOH A 125 725 235 HOH HOH . I 6 HOH A 126 726 232 HOH HOH . I 6 HOH A 127 727 149 HOH HOH . I 6 HOH A 128 728 206 HOH HOH . I 6 HOH A 129 729 265 HOH HOH . I 6 HOH A 130 730 240 HOH HOH . J 6 HOH B 1 601 244 HOH HOH . J 6 HOH B 2 602 182 HOH HOH . J 6 HOH B 3 603 166 HOH HOH . J 6 HOH B 4 604 63 HOH HOH . J 6 HOH B 5 605 125 HOH HOH . J 6 HOH B 6 606 65 HOH HOH . J 6 HOH B 7 607 39 HOH HOH . J 6 HOH B 8 608 201 HOH HOH . J 6 HOH B 9 609 195 HOH HOH . J 6 HOH B 10 610 64 HOH HOH . J 6 HOH B 11 611 107 HOH HOH . J 6 HOH B 12 612 251 HOH HOH . J 6 HOH B 13 613 185 HOH HOH . J 6 HOH B 14 614 77 HOH HOH . J 6 HOH B 15 615 43 HOH HOH . J 6 HOH B 16 616 137 HOH HOH . J 6 HOH B 17 617 17 HOH HOH . J 6 HOH B 18 618 83 HOH HOH . J 6 HOH B 19 619 76 HOH HOH . J 6 HOH B 20 620 12 HOH HOH . J 6 HOH B 21 621 28 HOH HOH . J 6 HOH B 22 622 108 HOH HOH . J 6 HOH B 23 623 161 HOH HOH . J 6 HOH B 24 624 52 HOH HOH . J 6 HOH B 25 625 22 HOH HOH . J 6 HOH B 26 626 214 HOH HOH . J 6 HOH B 27 627 30 HOH HOH . J 6 HOH B 28 628 120 HOH HOH . J 6 HOH B 29 629 61 HOH HOH . J 6 HOH B 30 630 68 HOH HOH . J 6 HOH B 31 631 78 HOH HOH . J 6 HOH B 32 632 27 HOH HOH . J 6 HOH B 33 633 86 HOH HOH . J 6 HOH B 34 634 94 HOH HOH . J 6 HOH B 35 635 89 HOH HOH . J 6 HOH B 36 636 15 HOH HOH . J 6 HOH B 37 637 74 HOH HOH . J 6 HOH B 38 638 4 HOH HOH . J 6 HOH B 39 639 81 HOH HOH . J 6 HOH B 40 640 200 HOH HOH . J 6 HOH B 41 641 18 HOH HOH . J 6 HOH B 42 642 186 HOH HOH . J 6 HOH B 43 643 7 HOH HOH . J 6 HOH B 44 644 209 HOH HOH . J 6 HOH B 45 645 54 HOH HOH . J 6 HOH B 46 646 33 HOH HOH . J 6 HOH B 47 647 280 HOH HOH . J 6 HOH B 48 648 14 HOH HOH . J 6 HOH B 49 649 32 HOH HOH . J 6 HOH B 50 650 73 HOH HOH . J 6 HOH B 51 651 69 HOH HOH . J 6 HOH B 52 652 91 HOH HOH . J 6 HOH B 53 653 38 HOH HOH . J 6 HOH B 54 654 261 HOH HOH . J 6 HOH B 55 655 193 HOH HOH . J 6 HOH B 56 656 177 HOH HOH . J 6 HOH B 57 657 253 HOH HOH . J 6 HOH B 58 658 16 HOH HOH . J 6 HOH B 59 659 113 HOH HOH . J 6 HOH B 60 660 212 HOH HOH . J 6 HOH B 61 661 110 HOH HOH . J 6 HOH B 62 662 142 HOH HOH . J 6 HOH B 63 663 45 HOH HOH . J 6 HOH B 64 664 135 HOH HOH . J 6 HOH B 65 665 31 HOH HOH . J 6 HOH B 66 666 93 HOH HOH . J 6 HOH B 67 667 160 HOH HOH . J 6 HOH B 68 668 2 HOH HOH . J 6 HOH B 69 669 159 HOH HOH . J 6 HOH B 70 670 44 HOH HOH . J 6 HOH B 71 671 154 HOH HOH . J 6 HOH B 72 672 51 HOH HOH . J 6 HOH B 73 673 283 HOH HOH . J 6 HOH B 74 674 20 HOH HOH . J 6 HOH B 75 675 58 HOH HOH . J 6 HOH B 76 676 95 HOH HOH . J 6 HOH B 77 677 21 HOH HOH . J 6 HOH B 78 678 269 HOH HOH . J 6 HOH B 79 679 266 HOH HOH . J 6 HOH B 80 680 99 HOH HOH . J 6 HOH B 81 681 3 HOH HOH . J 6 HOH B 82 682 183 HOH HOH . J 6 HOH B 83 683 234 HOH HOH . J 6 HOH B 84 684 156 HOH HOH . J 6 HOH B 85 685 174 HOH HOH . J 6 HOH B 86 686 145 HOH HOH . J 6 HOH B 87 687 129 HOH HOH . J 6 HOH B 88 688 179 HOH HOH . J 6 HOH B 89 689 66 HOH HOH . J 6 HOH B 90 690 202 HOH HOH . J 6 HOH B 91 691 224 HOH HOH . J 6 HOH B 92 692 192 HOH HOH . J 6 HOH B 93 693 207 HOH HOH . J 6 HOH B 94 694 112 HOH HOH . J 6 HOH B 95 695 90 HOH HOH . J 6 HOH B 96 696 25 HOH HOH . J 6 HOH B 97 697 276 HOH HOH . J 6 HOH B 98 698 290 HOH HOH . J 6 HOH B 99 699 255 HOH HOH . J 6 HOH B 100 700 85 HOH HOH . J 6 HOH B 101 701 143 HOH HOH . J 6 HOH B 102 702 55 HOH HOH . J 6 HOH B 103 703 123 HOH HOH . J 6 HOH B 104 704 172 HOH HOH . J 6 HOH B 105 705 176 HOH HOH . J 6 HOH B 106 706 105 HOH HOH . J 6 HOH B 107 707 34 HOH HOH . J 6 HOH B 108 708 98 HOH HOH . J 6 HOH B 109 709 250 HOH HOH . J 6 HOH B 110 710 144 HOH HOH . J 6 HOH B 111 711 218 HOH HOH . J 6 HOH B 112 712 70 HOH HOH . J 6 HOH B 113 713 150 HOH HOH . J 6 HOH B 114 714 8 HOH HOH . J 6 HOH B 115 715 96 HOH HOH . J 6 HOH B 116 716 155 HOH HOH . J 6 HOH B 117 717 88 HOH HOH . J 6 HOH B 118 718 163 HOH HOH . J 6 HOH B 119 719 221 HOH HOH . J 6 HOH B 120 720 236 HOH HOH . J 6 HOH B 121 721 294 HOH HOH . J 6 HOH B 122 722 295 HOH HOH . J 6 HOH B 123 723 100 HOH HOH . J 6 HOH B 124 724 23 HOH HOH . J 6 HOH B 125 725 194 HOH HOH . J 6 HOH B 126 726 189 HOH HOH . J 6 HOH B 127 727 296 HOH HOH . J 6 HOH B 128 728 133 HOH HOH . J 6 HOH B 129 729 237 HOH HOH . J 6 HOH B 130 730 188 HOH HOH . J 6 HOH B 131 731 239 HOH HOH . J 6 HOH B 132 732 204 HOH HOH . J 6 HOH B 133 733 139 HOH HOH . J 6 HOH B 134 734 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TXU . . . H 5 -8.217 -1.15 5.559 1 29.94 ? N1 TXU 503 B 1 HETATM 2 C C1 TXU . . . H 5 -6.943 -1.401 5.345 1 32.57 ? C1 TXU 503 B 1 HETATM 3 C C2 TXU . . . H 5 -6.446 -2.682 5.507 1 35.36 ? C2 TXU 503 B 1 HETATM 4 C C3 TXU . . . H 5 -7.295 -3.706 5.899 1 32.09 ? C3 TXU 503 B 1 HETATM 5 C C4 TXU . . . H 5 -8.628 -3.405 6.115 1 29.53 ? C4 TXU 503 B 1 HETATM 6 C C5 TXU . . . H 5 -9.055 -2.099 5.934 1 29.09 ? C5 TXU 503 B 1 HETATM 7 N N2 TXU . . . H 5 -4.014 -3.357 6.242 1 35.1 ? N2 TXU 503 B 1 HETATM 8 C C6 TXU . . . H 5 -4.968 -2.96 5.256 1 34.68 ? C6 TXU 503 B 1 HETATM 9 C C7 TXU . . . H 5 -4.238 -2.715 3.925 1 36.34 ? C7 TXU 503 B 1 HETATM 10 C C8 TXU . . . H 5 -2.931 -3.287 4.044 1 38.43 ? C8 TXU 503 B 1 HETATM 11 C C9 TXU . . . H 5 -2.659 -3.458 5.561 1 36.77 ? C9 TXU 503 B 1 HETATM 12 C C10 TXU . . . H 5 -4.274 -3.615 7.648 1 31.72 ? C10 TXU 503 B 1 HETATM 13 H HC1 TXU . . . H 5 -6.281 -0.601 5.04 1 39.16 ? HC1 TXU 503 B 1 HETATM 14 H HC3 TXU . . . H 5 -6.924 -4.714 6.033 1 38.59 ? HC3 TXU 503 B 1 HETATM 15 H HC4 TXU . . . H 5 -9.325 -4.176 6.421 1 35.51 ? HC4 TXU 503 B 1 HETATM 16 H HC5 TXU . . . H 5 -10.096 -1.853 6.103 1 34.98 ? HC5 TXU 503 B 1 HETATM 17 H HC71 TXU . . . H 5 -4.638 -2.205 3.058 1 43.68 ? HC71 TXU 503 B 1 HETATM 18 H HC82 TXU . . . H 5 -2.194 -2.619 3.609 1 46.2 ? HC82 TXU 503 B 1 HETATM 19 H HC81 TXU . . . H 5 -2.904 -4.254 3.552 1 46.2 ? HC81 TXU 503 B 1 HETATM 20 H HC91 TXU . . . H 5 -2.005 -2.668 5.913 1 44.2 ? HC91 TXU 503 B 1 HETATM 21 H HC92 TXU . . . H 5 -2.217 -4.431 5.753 1 44.2 ? HC92 TXU 503 B 1 HETATM 22 H H101 TXU . . . H 5 -5.056 -4.363 7.739 1 38.14 ? H101 TXU 503 B 1 HETATM 23 H H103 TXU . . . H 5 -4.594 -2.697 8.131 1 38.14 ? H103 TXU 503 B 1 HETATM 24 H H102 TXU . . . H 5 -3.368 -3.978 8.123 1 38.14 ? H102 TXU 503 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 24 #