data_8DT2
#
_model_server_result.job_id            UgjwaxSnO25c5SPkMJ_hmA 
_model_server_result.datetime_utc      '2024-11-15 13:39:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dt2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":602}' 
#
_entry.id    8DT2 
#
_exptl.entry_id    8DT2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8DT2 
_cell.length_a            124.711 
_cell.length_b            124.711 
_cell.length_c            128.693 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DT2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        144 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 72 A CYS 69 1_555 A SG CYS 99 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 A SG CYS 260 A CYS 257 1_555 A SG CYS 275 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 412 A CYS 409 1_555 A SG CYS 532 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 B SG CYS 72 B CYS 69 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 B SG CYS 260 B CYS 257 1_555 B SG CYS 275 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 B SG CYS 412 B CYS 409 1_555 B SG CYS 532 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
covale ? covale1 A OG SER 206 A SER 203 1_555 C P DEP . A DEP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? 
covale ? covale2 B OG SER 206 B SER 203 1_555 G P DEP . B DEP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 156 n n 
C1 C2 GOL sing 157 n n 
C1 H11 GOL sing 158 n n 
C1 H12 GOL sing 159 n n 
O1 HO1 GOL sing 160 n n 
C2 O2 GOL sing 161 n n 
C2 C3 GOL sing 162 n n 
C2 H2 GOL sing 163 n n 
O2 HO2 GOL sing 164 n n 
C3 O3 GOL sing 165 n n 
C3 H31 GOL sing 166 n n 
C3 H32 GOL sing 167 n n 
O3 HO3 GOL sing 168 n n 
#
_atom_sites.entry_id                     8DT2 
_atom_sites.fract_transf_matrix[1][1]    0.008019 
_atom_sites.fract_transf_matrix[1][2]    0.00463 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00777 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DEP A 1 601 604 DEP DEP . 
D 3 GOL A 1 602 2 GOL GOL . 
E 3 GOL A 1 603 7 GOL GOL . 
F 4 DMS A 1 604 503 DMS DMS . 
G 2 DEP B 1 601 604 DEP DEP . 
H 3 GOL B 1 602 4 GOL GOL . 
I 3 GOL B 1 603 8 GOL GOL . 
J 4 DMS B 1 604 504 DMS DMS . 
K 5 HOH A 1 701 59 HOH HOH . 
K 5 HOH A 2 702 158 HOH HOH . 
K 5 HOH A 3 703 34 HOH HOH . 
K 5 HOH A 4 704 139 HOH HOH . 
K 5 HOH A 5 705 171 HOH HOH . 
K 5 HOH A 6 706 161 HOH HOH . 
K 5 HOH A 7 707 104 HOH HOH . 
K 5 HOH A 8 708 87 HOH HOH . 
K 5 HOH A 9 709 136 HOH HOH . 
K 5 HOH A 10 710 118 HOH HOH . 
K 5 HOH A 11 711 128 HOH HOH . 
K 5 HOH A 12 712 71 HOH HOH . 
K 5 HOH A 13 713 117 HOH HOH . 
K 5 HOH A 14 714 3 HOH HOH . 
K 5 HOH A 15 715 150 HOH HOH . 
K 5 HOH A 16 716 61 HOH HOH . 
K 5 HOH A 17 717 140 HOH HOH . 
K 5 HOH A 18 718 4 HOH HOH . 
K 5 HOH A 19 719 122 HOH HOH . 
K 5 HOH A 20 720 125 HOH HOH . 
K 5 HOH A 21 721 141 HOH HOH . 
K 5 HOH A 22 722 163 HOH HOH . 
K 5 HOH A 23 723 81 HOH HOH . 
K 5 HOH A 24 724 20 HOH HOH . 
K 5 HOH A 25 725 13 HOH HOH . 
K 5 HOH A 26 726 116 HOH HOH . 
K 5 HOH A 27 727 65 HOH HOH . 
K 5 HOH A 28 728 6 HOH HOH . 
K 5 HOH A 29 729 168 HOH HOH . 
K 5 HOH A 30 730 5 HOH HOH . 
K 5 HOH A 31 731 144 HOH HOH . 
K 5 HOH A 32 732 26 HOH HOH . 
K 5 HOH A 33 733 180 HOH HOH . 
K 5 HOH A 34 734 101 HOH HOH . 
K 5 HOH A 35 735 78 HOH HOH . 
K 5 HOH A 36 736 69 HOH HOH . 
K 5 HOH A 37 737 86 HOH HOH . 
K 5 HOH A 38 738 18 HOH HOH . 
K 5 HOH A 39 739 17 HOH HOH . 
K 5 HOH A 40 740 38 HOH HOH . 
K 5 HOH A 41 741 160 HOH HOH . 
K 5 HOH A 42 742 30 HOH HOH . 
K 5 HOH A 43 743 170 HOH HOH . 
K 5 HOH A 44 744 48 HOH HOH . 
K 5 HOH A 45 745 27 HOH HOH . 
K 5 HOH A 46 746 7 HOH HOH . 
K 5 HOH A 47 747 41 HOH HOH . 
K 5 HOH A 48 748 131 HOH HOH . 
K 5 HOH A 49 749 70 HOH HOH . 
K 5 HOH A 50 750 12 HOH HOH . 
K 5 HOH A 51 751 181 HOH HOH . 
K 5 HOH A 52 752 68 HOH HOH . 
K 5 HOH A 53 753 112 HOH HOH . 
K 5 HOH A 54 754 154 HOH HOH . 
K 5 HOH A 55 755 83 HOH HOH . 
K 5 HOH A 56 756 53 HOH HOH . 
K 5 HOH A 57 757 126 HOH HOH . 
K 5 HOH A 58 758 16 HOH HOH . 
K 5 HOH A 59 759 119 HOH HOH . 
K 5 HOH A 60 760 47 HOH HOH . 
K 5 HOH A 61 761 113 HOH HOH . 
K 5 HOH A 62 762 132 HOH HOH . 
K 5 HOH A 63 763 60 HOH HOH . 
K 5 HOH A 64 764 79 HOH HOH . 
K 5 HOH A 65 765 84 HOH HOH . 
K 5 HOH A 66 766 123 HOH HOH . 
K 5 HOH A 67 767 23 HOH HOH . 
K 5 HOH A 68 768 85 HOH HOH . 
K 5 HOH A 69 769 44 HOH HOH . 
K 5 HOH A 70 770 98 HOH HOH . 
K 5 HOH A 71 771 82 HOH HOH . 
K 5 HOH A 72 772 120 HOH HOH . 
K 5 HOH A 73 773 76 HOH HOH . 
K 5 HOH A 74 774 77 HOH HOH . 
K 5 HOH A 75 775 99 HOH HOH . 
K 5 HOH A 76 776 169 HOH HOH . 
K 5 HOH A 77 777 105 HOH HOH . 
L 5 HOH B 1 701 142 HOH HOH . 
L 5 HOH B 2 702 9 HOH HOH . 
L 5 HOH B 3 703 91 HOH HOH . 
L 5 HOH B 4 704 52 HOH HOH . 
L 5 HOH B 5 705 143 HOH HOH . 
L 5 HOH B 6 706 58 HOH HOH . 
L 5 HOH B 7 707 145 HOH HOH . 
L 5 HOH B 8 708 15 HOH HOH . 
L 5 HOH B 9 709 110 HOH HOH . 
L 5 HOH B 10 710 153 HOH HOH . 
L 5 HOH B 11 711 28 HOH HOH . 
L 5 HOH B 12 712 164 HOH HOH . 
L 5 HOH B 13 713 173 HOH HOH . 
L 5 HOH B 14 714 21 HOH HOH . 
L 5 HOH B 15 715 36 HOH HOH . 
L 5 HOH B 16 716 49 HOH HOH . 
L 5 HOH B 17 717 159 HOH HOH . 
L 5 HOH B 18 718 100 HOH HOH . 
L 5 HOH B 19 719 92 HOH HOH . 
L 5 HOH B 20 720 103 HOH HOH . 
L 5 HOH B 21 721 151 HOH HOH . 
L 5 HOH B 22 722 137 HOH HOH . 
L 5 HOH B 23 723 25 HOH HOH . 
L 5 HOH B 24 724 1 HOH HOH . 
L 5 HOH B 25 725 11 HOH HOH . 
L 5 HOH B 26 726 72 HOH HOH . 
L 5 HOH B 27 727 130 HOH HOH . 
L 5 HOH B 28 728 33 HOH HOH . 
L 5 HOH B 29 729 152 HOH HOH . 
L 5 HOH B 30 730 63 HOH HOH . 
L 5 HOH B 31 731 75 HOH HOH . 
L 5 HOH B 32 732 37 HOH HOH . 
L 5 HOH B 33 733 31 HOH HOH . 
L 5 HOH B 34 734 114 HOH HOH . 
L 5 HOH B 35 735 88 HOH HOH . 
L 5 HOH B 36 736 80 HOH HOH . 
L 5 HOH B 37 737 57 HOH HOH . 
L 5 HOH B 38 738 178 HOH HOH . 
L 5 HOH B 39 739 40 HOH HOH . 
L 5 HOH B 40 740 166 HOH HOH . 
L 5 HOH B 41 741 22 HOH HOH . 
L 5 HOH B 42 742 149 HOH HOH . 
L 5 HOH B 43 743 182 HOH HOH . 
L 5 HOH B 44 744 172 HOH HOH . 
L 5 HOH B 45 745 127 HOH HOH . 
L 5 HOH B 46 746 106 HOH HOH . 
L 5 HOH B 47 747 43 HOH HOH . 
L 5 HOH B 48 748 19 HOH HOH . 
L 5 HOH B 49 749 94 HOH HOH . 
L 5 HOH B 50 750 115 HOH HOH . 
L 5 HOH B 51 751 133 HOH HOH . 
L 5 HOH B 52 752 93 HOH HOH . 
L 5 HOH B 53 753 138 HOH HOH . 
L 5 HOH B 54 754 46 HOH HOH . 
L 5 HOH B 55 755 108 HOH HOH . 
L 5 HOH B 56 756 24 HOH HOH . 
L 5 HOH B 57 757 157 HOH HOH . 
L 5 HOH B 58 758 74 HOH HOH . 
L 5 HOH B 59 759 56 HOH HOH . 
L 5 HOH B 60 760 64 HOH HOH . 
L 5 HOH B 61 761 175 HOH HOH . 
L 5 HOH B 62 762 165 HOH HOH . 
L 5 HOH B 63 763 96 HOH HOH . 
L 5 HOH B 64 764 121 HOH HOH . 
L 5 HOH B 65 765 162 HOH HOH . 
L 5 HOH B 66 766 35 HOH HOH . 
L 5 HOH B 67 767 156 HOH HOH . 
L 5 HOH B 68 768 177 HOH HOH . 
L 5 HOH B 69 769 45 HOH HOH . 
L 5 HOH B 70 770 174 HOH HOH . 
L 5 HOH B 71 771 51 HOH HOH . 
L 5 HOH B 72 772 42 HOH HOH . 
L 5 HOH B 73 773 54 HOH HOH . 
L 5 HOH B 74 774 97 HOH HOH . 
L 5 HOH B 75 775 90 HOH HOH . 
L 5 HOH B 76 776 39 HOH HOH . 
L 5 HOH B 77 777 135 HOH HOH . 
L 5 HOH B 78 778 55 HOH HOH . 
L 5 HOH B 79 779 124 HOH HOH . 
L 5 HOH B 80 780 179 HOH HOH . 
L 5 HOH B 81 781 134 HOH HOH . 
L 5 HOH B 82 782 129 HOH HOH . 
L 5 HOH B 83 783 167 HOH HOH . 
L 5 HOH B 84 784 95 HOH HOH . 
L 5 HOH B 85 785 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 -30.981 -36.536 52.82 1 47.52 ? C1 GOL 602 B 1 
HETATM 2 O O1 GOL . . . H 3 -30.177 -37.145 51.835 1 46.72 ? O1 GOL 602 B 1 
HETATM 3 C C2 GOL . . . H 3 -31.319 -37.542 53.916 1 55.92 ? C2 GOL 602 B 1 
HETATM 4 O O2 GOL . . . H 3 -31.336 -36.881 55.163 1 43.63 ? O2 GOL 602 B 1 
HETATM 5 C C3 GOL . . . H 3 -30.283 -38.663 53.926 1 42.42 ? C3 GOL 602 B 1 
HETATM 6 O O3 GOL . . . H 3 -30.659 -39.704 54.802 1 43.47 ? O3 GOL 602 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#