data_8DTD
#
_model_server_result.job_id            n3wtmA0xiVwQXdzxhzWFTA 
_model_server_result.datetime_utc      '2024-12-16 22:06:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dtd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    8DTD 
#
_exptl.entry_id    8DTD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              126.005 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHONOFORMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DTD 
_cell.length_a            56.474 
_cell.length_b            64.353 
_cell.length_c            83.942 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DTD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 7 A HIS 7 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc3 A OE1 GLU 115 A GLU 115 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc4 C O3 PPF . A PPF 301 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc5 C O5 PPF . A PPF 301 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc6 D ZN ZN . A ZN 302 1_555 B NE2 HIS 7 B HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc7 B NE2 HIS 66 B HIS 66 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc8 B OE1 GLU 115 B GLU 115 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc9 E O2 PPF . B PPF 301 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc10 E O4 PPF . B PPF 301 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
#
_chem_comp.formula           'C H3 O5 P' 
_chem_comp.formula_weight    126.005 
_chem_comp.id                PPF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHONOFORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 PPF sing 260 n n 
C1 O5 PPF doub 261 n n 
C1 P1 PPF sing 262 n n 
O1 P1 PPF sing 263 n n 
O1 HO1 PPF sing 264 n n 
O2 P1 PPF sing 265 n n 
O2 HO2 PPF sing 266 n n 
O3 P1 PPF doub 267 n n 
O4 HO4 PPF sing 268 n n 
#
_atom_sites.entry_id                     8DTD 
_atom_sites.fract_transf_matrix[1][1]    0.017707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011913 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PPF A 1 301 301 PPF PPF . 
D 3 ZN A 1 302 341 ZN ZN . 
E 2 PPF B 1 301 301 PPF PPF . 
F 3 ZN B 1 302 325 ZN ZN . 
G 4 HOH A 1 401 267 HOH HOH . 
G 4 HOH A 2 402 227 HOH HOH . 
G 4 HOH A 3 403 42 HOH HOH . 
G 4 HOH A 4 404 322 HOH HOH . 
G 4 HOH A 5 405 261 HOH HOH . 
G 4 HOH A 6 406 6 HOH HOH . 
G 4 HOH A 7 407 263 HOH HOH . 
G 4 HOH A 8 408 18 HOH HOH . 
G 4 HOH A 9 409 40 HOH HOH . 
G 4 HOH A 10 410 235 HOH HOH . 
G 4 HOH A 11 411 236 HOH HOH . 
G 4 HOH A 12 412 238 HOH HOH . 
G 4 HOH A 13 413 112 HOH HOH . 
G 4 HOH A 14 414 311 HOH HOH . 
G 4 HOH A 15 415 304 HOH HOH . 
G 4 HOH A 16 416 231 HOH HOH . 
G 4 HOH A 17 417 2 HOH HOH . 
G 4 HOH A 18 418 12 HOH HOH . 
G 4 HOH A 19 419 16 HOH HOH . 
G 4 HOH A 20 420 7 HOH HOH . 
G 4 HOH A 21 421 318 HOH HOH . 
G 4 HOH A 22 422 320 HOH HOH . 
G 4 HOH A 23 423 305 HOH HOH . 
G 4 HOH A 24 424 23 HOH HOH . 
G 4 HOH A 25 425 3 HOH HOH . 
G 4 HOH A 26 426 271 HOH HOH . 
G 4 HOH A 27 427 52 HOH HOH . 
G 4 HOH A 28 428 68 HOH HOH . 
G 4 HOH A 29 429 306 HOH HOH . 
G 4 HOH A 30 430 8 HOH HOH . 
G 4 HOH A 31 431 302 HOH HOH . 
G 4 HOH A 32 432 254 HOH HOH . 
G 4 HOH A 33 433 15 HOH HOH . 
G 4 HOH A 34 434 309 HOH HOH . 
G 4 HOH A 35 435 245 HOH HOH . 
G 4 HOH A 36 436 310 HOH HOH . 
G 4 HOH A 37 437 319 HOH HOH . 
G 4 HOH A 38 438 142 HOH HOH . 
G 4 HOH A 39 439 67 HOH HOH . 
G 4 HOH A 40 440 311 HOH HOH . 
G 4 HOH A 41 441 19 HOH HOH . 
G 4 HOH A 42 442 11 HOH HOH . 
G 4 HOH A 43 443 252 HOH HOH . 
G 4 HOH A 44 444 24 HOH HOH . 
G 4 HOH A 45 445 124 HOH HOH . 
G 4 HOH A 46 446 251 HOH HOH . 
G 4 HOH A 47 447 313 HOH HOH . 
G 4 HOH A 48 448 154 HOH HOH . 
G 4 HOH A 49 449 237 HOH HOH . 
G 4 HOH A 50 450 255 HOH HOH . 
G 4 HOH A 51 451 197 HOH HOH . 
G 4 HOH A 52 452 272 HOH HOH . 
G 4 HOH A 53 453 324 HOH HOH . 
G 4 HOH A 54 454 234 HOH HOH . 
G 4 HOH A 55 455 314 HOH HOH . 
G 4 HOH A 56 456 308 HOH HOH . 
H 4 HOH B 1 401 59 HOH HOH . 
H 4 HOH B 2 402 9 HOH HOH . 
H 4 HOH B 3 403 248 HOH HOH . 
H 4 HOH B 4 404 260 HOH HOH . 
H 4 HOH B 5 405 13 HOH HOH . 
H 4 HOH B 6 406 230 HOH HOH . 
H 4 HOH B 7 407 274 HOH HOH . 
H 4 HOH B 8 408 5 HOH HOH . 
H 4 HOH B 9 409 269 HOH HOH . 
H 4 HOH B 10 410 242 HOH HOH . 
H 4 HOH B 11 411 31 HOH HOH . 
H 4 HOH B 12 412 36 HOH HOH . 
H 4 HOH B 13 413 313 HOH HOH . 
H 4 HOH B 14 414 305 HOH HOH . 
H 4 HOH B 15 415 277 HOH HOH . 
H 4 HOH B 16 416 319 HOH HOH . 
H 4 HOH B 17 417 262 HOH HOH . 
H 4 HOH B 18 418 76 HOH HOH . 
H 4 HOH B 19 419 74 HOH HOH . 
H 4 HOH B 20 420 17 HOH HOH . 
H 4 HOH B 21 421 323 HOH HOH . 
H 4 HOH B 22 422 32 HOH HOH . 
H 4 HOH B 23 423 27 HOH HOH . 
H 4 HOH B 24 424 57 HOH HOH . 
H 4 HOH B 25 425 25 HOH HOH . 
H 4 HOH B 26 426 315 HOH HOH . 
H 4 HOH B 27 427 232 HOH HOH . 
H 4 HOH B 28 428 316 HOH HOH . 
H 4 HOH B 29 429 35 HOH HOH . 
H 4 HOH B 30 430 241 HOH HOH . 
H 4 HOH B 31 431 326 HOH HOH . 
H 4 HOH B 32 432 307 HOH HOH . 
H 4 HOH B 33 433 247 HOH HOH . 
H 4 HOH B 34 434 30 HOH HOH . 
H 4 HOH B 35 435 317 HOH HOH . 
H 4 HOH B 36 436 266 HOH HOH . 
H 4 HOH B 37 437 240 HOH HOH . 
H 4 HOH B 38 438 310 HOH HOH . 
H 4 HOH B 39 439 246 HOH HOH . 
H 4 HOH B 40 440 243 HOH HOH . 
H 4 HOH B 41 441 314 HOH HOH . 
H 4 HOH B 42 442 265 HOH HOH . 
H 4 HOH B 43 443 256 HOH HOH . 
H 4 HOH B 44 444 306 HOH HOH . 
H 4 HOH B 45 445 22 HOH HOH . 
H 4 HOH B 46 446 303 HOH HOH . 
H 4 HOH B 47 447 244 HOH HOH . 
H 4 HOH B 48 448 141 HOH HOH . 
H 4 HOH B 49 449 4 HOH HOH . 
H 4 HOH B 50 450 312 HOH HOH . 
H 4 HOH B 51 451 278 HOH HOH . 
H 4 HOH B 52 452 65 HOH HOH . 
H 4 HOH B 53 453 250 HOH HOH . 
H 4 HOH B 54 454 114 HOH HOH . 
H 4 HOH B 55 455 264 HOH HOH . 
H 4 HOH B 56 456 257 HOH HOH . 
H 4 HOH B 57 457 268 HOH HOH . 
H 4 HOH B 58 458 276 HOH HOH . 
H 4 HOH B 59 459 33 HOH HOH . 
H 4 HOH B 60 460 327 HOH HOH . 
H 4 HOH B 61 461 309 HOH HOH . 
H 4 HOH B 62 462 273 HOH HOH . 
H 4 HOH B 63 463 325 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PPF . . . E 2 1.96 -1.705 9.096 1 36.29 ? C1 PPF 301 B 1 
HETATM 2 O O1 PPF . . . E 2 0.787 -0.007 7.344 1 35.73 ? O1 PPF 301 B 1 
HETATM 3 O O2 PPF . . . E 2 -0.655 -1.646 8.389 1 36.44 ? O2 PPF 301 B 1 
HETATM 4 O O3 PPF . . . E 2 1.121 -2.411 6.735 1 38.96 ? O3 PPF 301 B 1 
HETATM 5 O O4 PPF . . . E 2 1.526 -2.071 10.198 1 32.51 ? O4 PPF 301 B 1 
HETATM 6 O O5 PPF . . . E 2 3.252 -1.534 8.819 1 39.84 ? O5 PPF 301 B 1 
HETATM 7 P P1 PPF . . . E 2 0.758 -1.433 7.844 1 36.54 ? P1 PPF 301 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           466 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#