data_8DTD # _model_server_result.job_id bmWSEm3rEzWKT90W7u2Lsg _model_server_result.datetime_utc '2024-10-26 20:38:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 8DTD # _exptl.entry_id 8DTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DTD _cell.length_a 56.474 _cell.length_b 64.353 _cell.length_c 83.942 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 7 A HIS 7 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 A OE1 GLU 115 A GLU 115 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 C O3 PPF . A PPF 301 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 C O5 PPF . A PPF 301 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc6 D ZN ZN . A ZN 302 1_555 B NE2 HIS 7 B HIS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc7 B NE2 HIS 66 B HIS 66 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc8 B OE1 GLU 115 B GLU 115 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc9 E O2 PPF . B PPF 301 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc10 E O4 PPF . B PPF 301 1_555 F ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DTD _atom_sites.fract_transf_matrix[1][1] 0.017707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PPF A 1 301 301 PPF PPF . D 3 ZN A 1 302 341 ZN ZN . E 2 PPF B 1 301 301 PPF PPF . F 3 ZN B 1 302 325 ZN ZN . G 4 HOH A 1 401 267 HOH HOH . G 4 HOH A 2 402 227 HOH HOH . G 4 HOH A 3 403 42 HOH HOH . G 4 HOH A 4 404 322 HOH HOH . G 4 HOH A 5 405 261 HOH HOH . G 4 HOH A 6 406 6 HOH HOH . G 4 HOH A 7 407 263 HOH HOH . G 4 HOH A 8 408 18 HOH HOH . G 4 HOH A 9 409 40 HOH HOH . G 4 HOH A 10 410 235 HOH HOH . G 4 HOH A 11 411 236 HOH HOH . G 4 HOH A 12 412 238 HOH HOH . G 4 HOH A 13 413 112 HOH HOH . G 4 HOH A 14 414 311 HOH HOH . G 4 HOH A 15 415 304 HOH HOH . G 4 HOH A 16 416 231 HOH HOH . G 4 HOH A 17 417 2 HOH HOH . G 4 HOH A 18 418 12 HOH HOH . G 4 HOH A 19 419 16 HOH HOH . G 4 HOH A 20 420 7 HOH HOH . G 4 HOH A 21 421 318 HOH HOH . G 4 HOH A 22 422 320 HOH HOH . G 4 HOH A 23 423 305 HOH HOH . G 4 HOH A 24 424 23 HOH HOH . G 4 HOH A 25 425 3 HOH HOH . G 4 HOH A 26 426 271 HOH HOH . G 4 HOH A 27 427 52 HOH HOH . G 4 HOH A 28 428 68 HOH HOH . G 4 HOH A 29 429 306 HOH HOH . G 4 HOH A 30 430 8 HOH HOH . G 4 HOH A 31 431 302 HOH HOH . G 4 HOH A 32 432 254 HOH HOH . G 4 HOH A 33 433 15 HOH HOH . G 4 HOH A 34 434 309 HOH HOH . G 4 HOH A 35 435 245 HOH HOH . G 4 HOH A 36 436 310 HOH HOH . G 4 HOH A 37 437 319 HOH HOH . G 4 HOH A 38 438 142 HOH HOH . G 4 HOH A 39 439 67 HOH HOH . G 4 HOH A 40 440 311 HOH HOH . G 4 HOH A 41 441 19 HOH HOH . G 4 HOH A 42 442 11 HOH HOH . G 4 HOH A 43 443 252 HOH HOH . G 4 HOH A 44 444 24 HOH HOH . G 4 HOH A 45 445 124 HOH HOH . G 4 HOH A 46 446 251 HOH HOH . G 4 HOH A 47 447 313 HOH HOH . G 4 HOH A 48 448 154 HOH HOH . G 4 HOH A 49 449 237 HOH HOH . G 4 HOH A 50 450 255 HOH HOH . G 4 HOH A 51 451 197 HOH HOH . G 4 HOH A 52 452 272 HOH HOH . G 4 HOH A 53 453 324 HOH HOH . G 4 HOH A 54 454 234 HOH HOH . G 4 HOH A 55 455 314 HOH HOH . G 4 HOH A 56 456 308 HOH HOH . H 4 HOH B 1 401 59 HOH HOH . H 4 HOH B 2 402 9 HOH HOH . H 4 HOH B 3 403 248 HOH HOH . H 4 HOH B 4 404 260 HOH HOH . H 4 HOH B 5 405 13 HOH HOH . H 4 HOH B 6 406 230 HOH HOH . H 4 HOH B 7 407 274 HOH HOH . H 4 HOH B 8 408 5 HOH HOH . H 4 HOH B 9 409 269 HOH HOH . H 4 HOH B 10 410 242 HOH HOH . H 4 HOH B 11 411 31 HOH HOH . H 4 HOH B 12 412 36 HOH HOH . H 4 HOH B 13 413 313 HOH HOH . H 4 HOH B 14 414 305 HOH HOH . H 4 HOH B 15 415 277 HOH HOH . H 4 HOH B 16 416 319 HOH HOH . H 4 HOH B 17 417 262 HOH HOH . H 4 HOH B 18 418 76 HOH HOH . H 4 HOH B 19 419 74 HOH HOH . H 4 HOH B 20 420 17 HOH HOH . H 4 HOH B 21 421 323 HOH HOH . H 4 HOH B 22 422 32 HOH HOH . H 4 HOH B 23 423 27 HOH HOH . H 4 HOH B 24 424 57 HOH HOH . H 4 HOH B 25 425 25 HOH HOH . H 4 HOH B 26 426 315 HOH HOH . H 4 HOH B 27 427 232 HOH HOH . H 4 HOH B 28 428 316 HOH HOH . H 4 HOH B 29 429 35 HOH HOH . H 4 HOH B 30 430 241 HOH HOH . H 4 HOH B 31 431 326 HOH HOH . H 4 HOH B 32 432 307 HOH HOH . H 4 HOH B 33 433 247 HOH HOH . H 4 HOH B 34 434 30 HOH HOH . H 4 HOH B 35 435 317 HOH HOH . H 4 HOH B 36 436 266 HOH HOH . H 4 HOH B 37 437 240 HOH HOH . H 4 HOH B 38 438 310 HOH HOH . H 4 HOH B 39 439 246 HOH HOH . H 4 HOH B 40 440 243 HOH HOH . H 4 HOH B 41 441 314 HOH HOH . H 4 HOH B 42 442 265 HOH HOH . H 4 HOH B 43 443 256 HOH HOH . H 4 HOH B 44 444 306 HOH HOH . H 4 HOH B 45 445 22 HOH HOH . H 4 HOH B 46 446 303 HOH HOH . H 4 HOH B 47 447 244 HOH HOH . H 4 HOH B 48 448 141 HOH HOH . H 4 HOH B 49 449 4 HOH HOH . H 4 HOH B 50 450 312 HOH HOH . H 4 HOH B 51 451 278 HOH HOH . H 4 HOH B 52 452 65 HOH HOH . H 4 HOH B 53 453 250 HOH HOH . H 4 HOH B 54 454 114 HOH HOH . H 4 HOH B 55 455 264 HOH HOH . H 4 HOH B 56 456 257 HOH HOH . H 4 HOH B 57 457 268 HOH HOH . H 4 HOH B 58 458 276 HOH HOH . H 4 HOH B 59 459 33 HOH HOH . H 4 HOH B 60 460 327 HOH HOH . H 4 HOH B 61 461 309 HOH HOH . H 4 HOH B 62 462 273 HOH HOH . H 4 HOH B 63 463 325 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.651 _atom_site.Cartn_y -2.316 _atom_site.Cartn_z 10.327 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #