data_8DTW # _model_server_result.job_id dFtqNuBRoo26Hn8yNkEf9A _model_server_result.datetime_utc '2024-11-16 07:23:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dtw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8DTW # _exptl.entry_id 8DTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.395 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-{[2-(trifluoromethyl)phenyl]methyl}-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DTW _cell.length_a 89.554 _cell.length_b 89.554 _cell.length_c 133.963 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O10 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O13 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 C MN MN . A MN 202 1_555 I O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 C MN MN . A MN 202 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc13 H MG MG . A MG 207 1_555 I O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? # _chem_comp.formula 'C21 H19 F3 N4 O4' _chem_comp.formula_weight 448.395 _chem_comp.id TLR _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-{[2-(trifluoromethyl)phenyl]methyl}-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 TLR doub 419 n y C22 C23 TLR sing 420 n y C21 C20 TLR sing 421 n y C07 N08 TLR sing 422 n n C07 C06 TLR sing 423 n n N08 C09 TLR sing 424 n n C23 C24 TLR doub 425 n y C06 C05 TLR sing 426 n n C20 C19 TLR sing 427 n n C20 C25 TLR doub 428 n y C09 O10 TLR doub 429 n n C09 C11 TLR sing 430 n n C30 C05 TLR doub 431 n y C30 C31 TLR sing 432 n y N18 C11 TLR sing 433 n n N18 C17 TLR doub 434 n n C19 C17 TLR sing 435 n n C11 C12 TLR doub 436 n n C17 N16 TLR sing 437 n n C05 C04 TLR sing 438 n y C31 N32 TLR doub 439 n y C24 C25 TLR sing 440 n y C25 C26 TLR sing 441 n n C12 O13 TLR sing 442 n n C12 C14 TLR sing 443 n n N16 C14 TLR sing 444 n n C04 C03 TLR doub 445 n y C14 O15 TLR doub 446 n n N32 C03 TLR sing 447 n y C03 O02 TLR sing 448 n n C26 F29 TLR sing 449 n n C26 F27 TLR sing 450 n n C26 F28 TLR sing 451 n n O02 C01 TLR sing 452 n n O13 H1 TLR sing 453 n n C01 H2 TLR sing 454 n n C01 H3 TLR sing 455 n n C01 H4 TLR sing 456 n n C04 H5 TLR sing 457 n n C06 H6 TLR sing 458 n n C06 H7 TLR sing 459 n n C07 H8 TLR sing 460 n n C07 H9 TLR sing 461 n n C19 H10 TLR sing 462 n n C19 H11 TLR sing 463 n n C21 H12 TLR sing 464 n n C22 H13 TLR sing 465 n n C23 H14 TLR sing 466 n n C24 H15 TLR sing 467 n n C30 H16 TLR sing 468 n n C31 H17 TLR sing 469 n n N08 H18 TLR sing 470 n n N16 H19 TLR sing 471 n n # _atom_sites.entry_id 8DTW _atom_sites.fract_transf_matrix[1][1] 0.011166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 TLR A 1 203 203 TLR 036 . E 4 QQ4 A 1 204 204 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 MG A 1 207 1 MG MG . I 7 HOH A 1 301 47 HOH HOH . I 7 HOH A 2 302 20 HOH HOH . I 7 HOH A 3 303 6 HOH HOH . I 7 HOH A 4 304 44 HOH HOH . I 7 HOH A 5 305 41 HOH HOH . I 7 HOH A 6 306 27 HOH HOH . I 7 HOH A 7 307 60 HOH HOH . I 7 HOH A 8 308 33 HOH HOH . I 7 HOH A 9 309 37 HOH HOH . I 7 HOH A 10 310 8 HOH HOH . I 7 HOH A 11 311 30 HOH HOH . I 7 HOH A 12 312 19 HOH HOH . I 7 HOH A 13 313 38 HOH HOH . I 7 HOH A 14 314 4 HOH HOH . I 7 HOH A 15 315 9 HOH HOH . I 7 HOH A 16 316 10 HOH HOH . I 7 HOH A 17 317 1 HOH HOH . I 7 HOH A 18 318 25 HOH HOH . I 7 HOH A 19 319 3 HOH HOH . I 7 HOH A 20 320 52 HOH HOH . I 7 HOH A 21 321 57 HOH HOH . I 7 HOH A 22 322 35 HOH HOH . I 7 HOH A 23 323 58 HOH HOH . I 7 HOH A 24 324 22 HOH HOH . I 7 HOH A 25 325 36 HOH HOH . I 7 HOH A 26 326 45 HOH HOH . I 7 HOH A 27 327 26 HOH HOH . I 7 HOH A 28 328 24 HOH HOH . I 7 HOH A 29 329 28 HOH HOH . I 7 HOH A 30 330 13 HOH HOH . I 7 HOH A 31 331 62 HOH HOH . I 7 HOH A 32 332 2 HOH HOH . I 7 HOH A 33 333 55 HOH HOH . I 7 HOH A 34 334 56 HOH HOH . I 7 HOH A 35 335 5 HOH HOH . I 7 HOH A 36 336 50 HOH HOH . I 7 HOH A 37 337 61 HOH HOH . I 7 HOH A 38 338 48 HOH HOH . I 7 HOH A 39 339 51 HOH HOH . I 7 HOH A 40 340 59 HOH HOH . I 7 HOH A 41 341 21 HOH HOH . I 7 HOH A 42 342 15 HOH HOH . I 7 HOH A 43 343 31 HOH HOH . I 7 HOH A 44 344 53 HOH HOH . I 7 HOH A 45 345 29 HOH HOH . I 7 HOH A 46 346 7 HOH HOH . I 7 HOH A 47 347 42 HOH HOH . I 7 HOH A 48 348 18 HOH HOH . I 7 HOH A 49 349 16 HOH HOH . I 7 HOH A 50 350 46 HOH HOH . I 7 HOH A 51 351 23 HOH HOH . I 7 HOH A 52 352 54 HOH HOH . I 7 HOH A 53 353 63 HOH HOH . I 7 HOH A 54 354 34 HOH HOH . I 7 HOH A 55 355 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 TLR . . . D 3 43.036 15.163 16.427 1 84.36 ? O10 TLR 203 A 1 HETATM 2 O O13 TLR . . . D 3 41.093 16.418 17.774 1 74.23 ? O13 TLR 203 A 1 HETATM 3 O O15 TLR . . . D 3 38.41 16.138 18.493 1 73.5 ? O15 TLR 203 A 1 HETATM 4 C C01 TLR . . . D 3 42.785 9.644 20.583 1 121.9 ? C01 TLR 203 A 1 HETATM 5 C C03 TLR . . . D 3 43.195 10.296 18.364 1 120.62 ? C03 TLR 203 A 1 HETATM 6 C C04 TLR . . . D 3 43.716 11.448 17.796 1 115.27 ? C04 TLR 203 A 1 HETATM 7 C C05 TLR . . . D 3 44.547 11.37 16.688 1 108.48 ? C05 TLR 203 A 1 HETATM 8 C C06 TLR . . . D 3 45.134 12.622 16.038 1 101.34 ? C06 TLR 203 A 1 HETATM 9 C C07 TLR . . . D 3 44.248 13.157 14.911 1 101.01 ? C07 TLR 203 A 1 HETATM 10 C C09 TLR . . . D 3 42.336 14.254 16.134 1 92.79 ? C09 TLR 203 A 1 HETATM 11 C C11 TLR . . . D 3 40.876 14.219 16.587 1 94.17 ? C11 TLR 203 A 1 HETATM 12 C C12 TLR . . . D 3 40.298 15.324 17.408 1 83.39 ? C12 TLR 203 A 1 HETATM 13 C C14 TLR . . . D 3 38.87 15.262 17.842 1 85.34 ? C14 TLR 203 A 1 HETATM 14 C C17 TLR . . . D 3 38.623 13.03 16.646 1 103.27 ? C17 TLR 203 A 1 HETATM 15 C C19 TLR . . . D 3 37.766 11.826 16.247 1 117.09 ? C19 TLR 203 A 1 HETATM 16 C C20 TLR . . . D 3 38.677 10.604 16.073 1 124.59 ? C20 TLR 203 A 1 HETATM 17 C C21 TLR . . . D 3 39.133 10.303 14.8 1 123.27 ? C21 TLR 203 A 1 HETATM 18 C C22 TLR . . . D 3 39.961 9.211 14.588 1 129.17 ? C22 TLR 203 A 1 HETATM 19 C C23 TLR . . . D 3 40.339 8.415 15.657 1 131.14 ? C23 TLR 203 A 1 HETATM 20 C C24 TLR . . . D 3 39.888 8.713 16.932 1 129.33 ? C24 TLR 203 A 1 HETATM 21 C C25 TLR . . . D 3 39.06 9.803 17.152 1 128.19 ? C25 TLR 203 A 1 HETATM 22 C C26 TLR . . . D 3 38.598 10.073 18.587 1 130.9 ? C26 TLR 203 A 1 HETATM 23 C C30 TLR . . . D 3 44.821 10.104 16.194 1 112.93 ? C30 TLR 203 A 1 HETATM 24 C C31 TLR . . . D 3 44.271 8.989 16.807 1 116.76 ? C31 TLR 203 A 1 HETATM 25 F F27 TLR . . . D 3 39.068 11.28 19.019 1 127.58 ? F27 TLR 203 A 1 HETATM 26 F F28 TLR . . . D 3 39.1 9.096 19.397 1 135.87 ? F28 TLR 203 A 1 HETATM 27 F F29 TLR . . . D 3 37.235 10.045 18.663 1 129.08 ? F29 TLR 203 A 1 HETATM 28 N N08 TLR . . . D 3 42.863 13.156 15.342 1 101.91 ? N08 TLR 203 A 1 HETATM 29 N N16 TLR . . . D 3 38.044 14.127 17.465 1 90.74 ? N16 TLR 203 A 1 HETATM 30 N N18 TLR . . . D 3 40.045 13.089 16.217 1 106.41 ? N18 TLR 203 A 1 HETATM 31 N N32 TLR . . . D 3 43.482 9.108 17.862 1 121.56 ? N32 TLR 203 A 1 HETATM 32 O O02 TLR . . . D 3 42.357 10.393 19.481 1 125 ? O02 TLR 203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #