data_8DTW # _model_server_result.job_id yHmoSnb-eYdl9O3Vu0GgQA _model_server_result.datetime_utc '2024-11-16 07:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dtw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8DTW # _exptl.entry_id 8DTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DTW _cell.length_a 89.554 _cell.length_b 89.554 _cell.length_c 133.963 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O13 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O15 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 C MN MN . A MN 202 1_555 D O10 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc10 C MN MN . A MN 202 1_555 D O13 TLR . A TLR 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc11 C MN MN . A MN 202 1_555 I O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc12 C MN MN . A MN 202 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc13 H MG MG . A MG 207 1_555 I O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 277 n n C21 N02 QQ4 sing 278 n n C20 C19 QQ4 sing 279 n n C19 C42 QQ4 sing 280 n n N02 C12 QQ4 sing 281 n n N02 C42 QQ4 sing 282 n n C12 C11 QQ4 sing 283 n n C42 O05 QQ4 doub 284 n n C38 C41 QQ4 sing 285 n n C38 N07 QQ4 sing 286 n n C41 C40 QQ4 sing 287 n n C10 C09 QQ4 sing 288 n n C11 C01 QQ4 sing 289 n n C40 C39 QQ4 sing 290 n n N07 C09 QQ4 sing 291 n n N07 C39 QQ4 sing 292 n n C01 C02 QQ4 sing 293 n n C01 N03 QQ4 sing 294 n n C08 C09 QQ4 sing 295 n n C08 C07 QQ4 sing 296 n n C02 C03 QQ4 sing 297 n n C39 O07 QQ4 doub 298 n n C26 C27 QQ4 sing 299 n n C26 N04 QQ4 sing 300 n n C22 N03 QQ4 sing 301 n n C22 C25 QQ4 sing 302 n n N03 C23 QQ4 sing 303 n n C06 C07 QQ4 sing 304 n n C06 C05 QQ4 sing 305 n n C07 N06 QQ4 sing 306 n n C27 C28 QQ4 sing 307 n n C03 N04 QQ4 sing 308 n n C03 C04 QQ4 sing 309 n n C25 C24 QQ4 sing 310 n n N04 C29 QQ4 sing 311 n n C04 C05 QQ4 sing 312 n n O04 C30 QQ4 doub 313 n n C23 O02 QQ4 doub 314 n n C23 C24 QQ4 sing 315 n n C05 N05 QQ4 sing 316 n n N06 C34 QQ4 sing 317 n n N06 C37 QQ4 sing 318 n n C34 C35 QQ4 sing 319 n n C28 C29 QQ4 sing 320 n n C29 O03 QQ4 doub 321 n n C30 N05 QQ4 sing 322 n n C30 C31 QQ4 sing 323 n n N05 C33 QQ4 sing 324 n n C37 O06 QQ4 doub 325 n n C37 C36 QQ4 sing 326 n n C35 C36 QQ4 sing 327 n n C31 C32 QQ4 sing 328 n n C33 C32 QQ4 sing 329 n n C12 H1 QQ4 sing 330 n n C12 H2 QQ4 sing 331 n n C11 H3 QQ4 sing 332 n n C11 H4 QQ4 sing 333 n n C10 H5 QQ4 sing 334 n n C10 H6 QQ4 sing 335 n n C10 H7 QQ4 sing 336 n n C01 H8 QQ4 sing 337 n n C02 H9 QQ4 sing 338 n n C02 H10 QQ4 sing 339 n n C03 H11 QQ4 sing 340 n n C04 H12 QQ4 sing 341 n n C04 H13 QQ4 sing 342 n n C05 H14 QQ4 sing 343 n n C06 H15 QQ4 sing 344 n n C06 H16 QQ4 sing 345 n n C07 H17 QQ4 sing 346 n n C08 H18 QQ4 sing 347 n n C08 H19 QQ4 sing 348 n n C09 H20 QQ4 sing 349 n n C19 H21 QQ4 sing 350 n n C19 H22 QQ4 sing 351 n n C20 H23 QQ4 sing 352 n n C20 H24 QQ4 sing 353 n n C21 H25 QQ4 sing 354 n n C21 H26 QQ4 sing 355 n n C22 H27 QQ4 sing 356 n n C22 H28 QQ4 sing 357 n n C24 H29 QQ4 sing 358 n n C24 H30 QQ4 sing 359 n n C25 H31 QQ4 sing 360 n n C25 H32 QQ4 sing 361 n n C26 H33 QQ4 sing 362 n n C26 H34 QQ4 sing 363 n n C27 H35 QQ4 sing 364 n n C27 H36 QQ4 sing 365 n n C28 H37 QQ4 sing 366 n n C28 H38 QQ4 sing 367 n n C31 H39 QQ4 sing 368 n n C31 H40 QQ4 sing 369 n n C32 H41 QQ4 sing 370 n n C32 H42 QQ4 sing 371 n n C33 H43 QQ4 sing 372 n n C33 H44 QQ4 sing 373 n n C34 H45 QQ4 sing 374 n n C34 H46 QQ4 sing 375 n n C35 H47 QQ4 sing 376 n n C35 H48 QQ4 sing 377 n n C36 H49 QQ4 sing 378 n n C36 H50 QQ4 sing 379 n n C38 H51 QQ4 sing 380 n n C38 H52 QQ4 sing 381 n n C40 H53 QQ4 sing 382 n n C40 H54 QQ4 sing 383 n n C41 H55 QQ4 sing 384 n n C41 H56 QQ4 sing 385 n n # _atom_sites.entry_id 8DTW _atom_sites.fract_transf_matrix[1][1] 0.011166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 TLR A 1 203 203 TLR 036 . E 4 QQ4 A 1 204 204 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 MG A 1 207 1 MG MG . I 7 HOH A 1 301 47 HOH HOH . I 7 HOH A 2 302 20 HOH HOH . I 7 HOH A 3 303 6 HOH HOH . I 7 HOH A 4 304 44 HOH HOH . I 7 HOH A 5 305 41 HOH HOH . I 7 HOH A 6 306 27 HOH HOH . I 7 HOH A 7 307 60 HOH HOH . I 7 HOH A 8 308 33 HOH HOH . I 7 HOH A 9 309 37 HOH HOH . I 7 HOH A 10 310 8 HOH HOH . I 7 HOH A 11 311 30 HOH HOH . I 7 HOH A 12 312 19 HOH HOH . I 7 HOH A 13 313 38 HOH HOH . I 7 HOH A 14 314 4 HOH HOH . I 7 HOH A 15 315 9 HOH HOH . I 7 HOH A 16 316 10 HOH HOH . I 7 HOH A 17 317 1 HOH HOH . I 7 HOH A 18 318 25 HOH HOH . I 7 HOH A 19 319 3 HOH HOH . I 7 HOH A 20 320 52 HOH HOH . I 7 HOH A 21 321 57 HOH HOH . I 7 HOH A 22 322 35 HOH HOH . I 7 HOH A 23 323 58 HOH HOH . I 7 HOH A 24 324 22 HOH HOH . I 7 HOH A 25 325 36 HOH HOH . I 7 HOH A 26 326 45 HOH HOH . I 7 HOH A 27 327 26 HOH HOH . I 7 HOH A 28 328 24 HOH HOH . I 7 HOH A 29 329 28 HOH HOH . I 7 HOH A 30 330 13 HOH HOH . I 7 HOH A 31 331 62 HOH HOH . I 7 HOH A 32 332 2 HOH HOH . I 7 HOH A 33 333 55 HOH HOH . I 7 HOH A 34 334 56 HOH HOH . I 7 HOH A 35 335 5 HOH HOH . I 7 HOH A 36 336 50 HOH HOH . I 7 HOH A 37 337 61 HOH HOH . I 7 HOH A 38 338 48 HOH HOH . I 7 HOH A 39 339 51 HOH HOH . I 7 HOH A 40 340 59 HOH HOH . I 7 HOH A 41 341 21 HOH HOH . I 7 HOH A 42 342 15 HOH HOH . I 7 HOH A 43 343 31 HOH HOH . I 7 HOH A 44 344 53 HOH HOH . I 7 HOH A 45 345 29 HOH HOH . I 7 HOH A 46 346 7 HOH HOH . I 7 HOH A 47 347 42 HOH HOH . I 7 HOH A 48 348 18 HOH HOH . I 7 HOH A 49 349 16 HOH HOH . I 7 HOH A 50 350 46 HOH HOH . I 7 HOH A 51 351 23 HOH HOH . I 7 HOH A 52 352 54 HOH HOH . I 7 HOH A 53 353 63 HOH HOH . I 7 HOH A 54 354 34 HOH HOH . I 7 HOH A 55 355 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 QQ4 . . . E 4 40.078 33.044 16.023 1 93.43 ? C11 QQ4 204 A 1 HETATM 2 C C10 QQ4 . . . E 4 46.861 31.87 9.481 1 111.97 ? C10 QQ4 204 A 1 HETATM 3 C C01 QQ4 . . . E 4 40.598 33.475 14.659 1 106.9 ? C01 QQ4 204 A 1 HETATM 4 C C02 QQ4 . . . E 4 41.834 32.654 14.296 1 106.48 ? C02 QQ4 204 A 1 HETATM 5 C C03 QQ4 . . . E 4 41.569 31.583 13.228 1 104.49 ? C03 QQ4 204 A 1 HETATM 6 C C04 QQ4 . . . E 4 42.763 31.506 12.265 1 102.75 ? C04 QQ4 204 A 1 HETATM 7 C C05 QQ4 . . . E 4 44.073 31.202 12.992 1 100.96 ? C05 QQ4 204 A 1 HETATM 8 C C06 QQ4 . . . E 4 44.894 30.244 12.124 1 101.87 ? C06 QQ4 204 A 1 HETATM 9 C C07 QQ4 . . . E 4 46.335 30.085 12.624 1 101.75 ? C07 QQ4 204 A 1 HETATM 10 C C08 QQ4 . . . E 4 47.319 30.81 11.697 1 108.75 ? C08 QQ4 204 A 1 HETATM 11 C C09 QQ4 . . . E 4 47.008 30.542 10.222 1 106.96 ? C09 QQ4 204 A 1 HETATM 12 C C22 QQ4 . . . E 4 41.93 35.491 15.597 1 110.29 ? C22 QQ4 204 A 1 HETATM 13 C C23 QQ4 . . . E 4 40.453 35.915 13.785 1 114.78 ? C23 QQ4 204 A 1 HETATM 14 C C24 QQ4 . . . E 4 41.12 37.241 14.157 1 109.5 ? C24 QQ4 204 A 1 HETATM 15 C C25 QQ4 . . . E 4 42.345 36.801 14.941 1 105.57 ? C25 QQ4 204 A 1 HETATM 16 C C26 QQ4 . . . E 4 39.14 31.004 12.594 1 94.69 ? C26 QQ4 204 A 1 HETATM 17 C C27 QQ4 . . . E 4 38.005 31.831 11.986 1 102.73 ? C27 QQ4 204 A 1 HETATM 18 C C28 QQ4 . . . E 4 38.698 32.702 10.943 1 112 ? C28 QQ4 204 A 1 HETATM 19 C C29 QQ4 . . . E 4 40.116 32.844 11.47 1 113.72 ? C29 QQ4 204 A 1 HETATM 20 C C30 QQ4 . . . E 4 45.493 32.854 14.421 1 115.62 ? C30 QQ4 204 A 1 HETATM 21 C C31 QQ4 . . . E 4 46.094 34.225 14.181 1 118.16 ? C31 QQ4 204 A 1 HETATM 22 C C32 QQ4 . . . E 4 45.307 34.764 13.015 1 117.21 ? C32 QQ4 204 A 1 HETATM 23 C C33 QQ4 . . . E 4 44.94 33.525 12.202 1 115.41 ? C33 QQ4 204 A 1 HETATM 24 C C34 QQ4 . . . E 4 47.548 28.133 13.856 1 89.58 ? C34 QQ4 204 A 1 HETATM 25 C C35 QQ4 . . . E 4 48.068 26.789 13.334 1 86.24 ? C35 QQ4 204 A 1 HETATM 26 C C36 QQ4 . . . E 4 47.014 26.314 12.392 1 79.37 ? C36 QQ4 204 A 1 HETATM 27 C C37 QQ4 . . . E 4 46.393 27.566 11.845 1 90.67 ? C37 QQ4 204 A 1 HETATM 28 C C38 QQ4 . . . E 4 49.486 29.805 10.053 1 101.6 ? C38 QQ4 204 A 1 HETATM 29 C C39 QQ4 . . . E 4 47.954 28.85 8.51 1 109.76 ? C39 QQ4 204 A 1 HETATM 30 C C40 QQ4 . . . E 4 49.329 28.269 8.21 1 106.25 ? C40 QQ4 204 A 1 HETATM 31 C C41 QQ4 . . . E 4 50.282 29.233 8.882 1 103.27 ? C41 QQ4 204 A 1 HETATM 32 N N03 QQ4 . . . E 4 40.972 34.881 14.681 1 118.11 ? N03 QQ4 204 A 1 HETATM 33 N N04 QQ4 . . . E 4 40.344 31.818 12.474 1 105.72 ? N04 QQ4 204 A 1 HETATM 34 N N05 QQ4 . . . E 4 44.796 32.448 13.194 1 113.28 ? N05 QQ4 204 A 1 HETATM 35 N N06 QQ4 . . . E 4 46.717 28.683 12.747 1 93.4 ? N06 QQ4 204 A 1 HETATM 36 N N07 QQ4 . . . E 4 48.086 29.778 9.628 1 103.9 ? N07 QQ4 204 A 1 HETATM 37 O O02 QQ4 . . . E 4 39.658 35.753 12.921 1 114.23 ? O02 QQ4 204 A 1 HETATM 38 O O03 QQ4 . . . E 4 40.886 33.677 11.128 1 112.06 ? O03 QQ4 204 A 1 HETATM 39 O O04 QQ4 . . . E 4 45.574 32.221 15.421 1 111.95 ? O04 QQ4 204 A 1 HETATM 40 O O06 QQ4 . . . E 4 45.749 27.617 10.849 1 94.55 ? O06 QQ4 204 A 1 HETATM 41 O O07 QQ4 . . . E 4 46.953 28.597 7.933 1 109.1 ? O07 QQ4 204 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #