data_8DU3 # _model_server_result.job_id XUK4Uaf3QIDWGmndH5C8Jw _model_server_result.datetime_utc '2024-11-07 12:53:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8du3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3002}' # _entry.id 8DU3 # _exptl.entry_id 8DU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DU3 _cell.length_a 39.6 _cell.length_b 179.8 _cell.length_c 141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8DU3 _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TKO A 1 3001 3001 TKO XXX . C 3 CLR A 1 3002 3002 CLR CLR . D 3 CLR A 1 3003 3003 CLR CLR . E 3 CLR A 1 3004 3004 CLR CLR . F 4 OLC A 1 3005 3005 OLC OLC . G 4 OLC A 1 3006 3006 OLC OLC . H 4 OLC A 1 3007 3007 OLC OLC . I 4 OLC A 1 3008 3008 OLC OLC . J 5 OLA A 1 3009 3011 OLA OLA . K 5 OLA A 1 3010 3012 OLA OLA . L 5 OLA A 1 3011 3014 OLA OLA . M 5 OLA A 1 3012 3015 OLA OLA . N 5 OLA A 1 3013 3016 OLA OLA . O 5 OLA A 1 3014 3018 OLA OLA . P 5 OLA A 1 3015 3019 OLA OLA . Q 5 OLA A 1 3016 3021 OLA OLA . R 5 OLA A 1 3017 3022 OLA OLA . S 5 OLA A 1 3018 3023 OLA OLA . T 5 OLA A 1 3019 3026 OLA OLA . U 5 OLA A 1 3020 3027 OLA OLA . V 5 OLA A 1 3021 3028 OLA OLA . W 5 OLA A 1 3022 3030 OLA OLA . X 5 OLA A 1 3023 3031 OLA OLA . Y 5 OLA A 1 3024 3032 OLA OLA . Z 5 OLA A 1 3025 3033 OLA OLA . AA 6 HOH A 1 3101 37 HOH HOH . AA 6 HOH A 2 3102 43 HOH HOH . AA 6 HOH A 3 3103 39 HOH HOH . AA 6 HOH A 4 3104 38 HOH HOH . AA 6 HOH A 5 3105 8 HOH HOH . AA 6 HOH A 6 3106 14 HOH HOH . AA 6 HOH A 7 3107 4 HOH HOH . AA 6 HOH A 8 3108 40 HOH HOH . AA 6 HOH A 9 3109 52 HOH HOH . AA 6 HOH A 10 3110 45 HOH HOH . AA 6 HOH A 11 3111 50 HOH HOH . AA 6 HOH A 12 3112 36 HOH HOH . AA 6 HOH A 13 3113 48 HOH HOH . AA 6 HOH A 14 3114 3 HOH HOH . AA 6 HOH A 15 3115 1 HOH HOH . AA 6 HOH A 16 3116 11 HOH HOH . AA 6 HOH A 17 3117 41 HOH HOH . AA 6 HOH A 18 3118 49 HOH HOH . AA 6 HOH A 19 3119 47 HOH HOH . AA 6 HOH A 20 3120 27 HOH HOH . AA 6 HOH A 21 3121 28 HOH HOH . AA 6 HOH A 22 3122 7 HOH HOH . AA 6 HOH A 23 3123 16 HOH HOH . AA 6 HOH A 24 3124 24 HOH HOH . AA 6 HOH A 25 3125 42 HOH HOH . AA 6 HOH A 26 3126 5 HOH HOH . AA 6 HOH A 27 3127 26 HOH HOH . AA 6 HOH A 28 3128 17 HOH HOH . AA 6 HOH A 29 3129 9 HOH HOH . AA 6 HOH A 30 3130 23 HOH HOH . AA 6 HOH A 31 3131 34 HOH HOH . AA 6 HOH A 32 3132 44 HOH HOH . AA 6 HOH A 33 3133 2 HOH HOH . AA 6 HOH A 34 3134 18 HOH HOH . AA 6 HOH A 35 3135 13 HOH HOH . AA 6 HOH A 36 3136 20 HOH HOH . AA 6 HOH A 37 3137 33 HOH HOH . AA 6 HOH A 38 3138 15 HOH HOH . AA 6 HOH A 39 3139 25 HOH HOH . AA 6 HOH A 40 3140 46 HOH HOH . AA 6 HOH A 41 3141 19 HOH HOH . AA 6 HOH A 42 3142 10 HOH HOH . AA 6 HOH A 43 3143 54 HOH HOH . AA 6 HOH A 44 3144 35 HOH HOH . AA 6 HOH A 45 3145 29 HOH HOH . AA 6 HOH A 46 3146 30 HOH HOH . AA 6 HOH A 47 3147 21 HOH HOH . AA 6 HOH A 48 3148 6 HOH HOH . AA 6 HOH A 49 3149 32 HOH HOH . AA 6 HOH A 50 3150 12 HOH HOH . AA 6 HOH A 51 3151 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . C 3 -8.302 10.842 13.189 1 44.68 ? C1 CLR 3002 A 1 HETATM 2 C C2 CLR . . . C 3 -8.311 12.365 13.169 1 46.15 ? C2 CLR 3002 A 1 HETATM 3 C C3 CLR . . . C 3 -6.906 12.91 12.953 1 50 ? C3 CLR 3002 A 1 HETATM 4 C C4 CLR . . . C 3 -6.374 12.418 11.616 1 53.35 ? C4 CLR 3002 A 1 HETATM 5 C C5 CLR . . . C 3 -6.456 10.914 11.541 1 49.43 ? C5 CLR 3002 A 1 HETATM 6 C C6 CLR . . . C 3 -5.358 10.249 11.139 1 43.1 ? C6 CLR 3002 A 1 HETATM 7 C C7 CLR . . . C 3 -5.307 8.75 10.964 1 47.87 ? C7 CLR 3002 A 1 HETATM 8 C C8 CLR . . . C 3 -6.695 8.129 10.992 1 47.68 ? C8 CLR 3002 A 1 HETATM 9 C C9 CLR . . . C 3 -7.535 8.735 12.112 1 41.87 ? C9 CLR 3002 A 1 HETATM 10 C C10 CLR . . . C 3 -7.76 10.235 11.896 1 51.63 ? C10 CLR 3002 A 1 HETATM 11 C C11 CLR . . . C 3 -8.848 7.972 12.325 1 40.56 ? C11 CLR 3002 A 1 HETATM 12 C C12 CLR . . . C 3 -8.676 6.452 12.442 1 44.63 ? C12 CLR 3002 A 1 HETATM 13 C C13 CLR . . . C 3 -7.905 5.89 11.261 1 40.92 ? C13 CLR 3002 A 1 HETATM 14 C C14 CLR . . . C 3 -6.578 6.635 11.233 1 51.39 ? C14 CLR 3002 A 1 HETATM 15 C C15 CLR . . . C 3 -5.71 5.852 10.257 1 50.68 ? C15 CLR 3002 A 1 HETATM 16 C C16 CLR . . . C 3 -6.167 4.407 10.451 1 45.87 ? C16 CLR 3002 A 1 HETATM 17 C C17 CLR . . . C 3 -7.419 4.44 11.349 1 48.13 ? C17 CLR 3002 A 1 HETATM 18 C C18 CLR . . . C 3 -8.7 6.084 9.968 1 46.07 ? C18 CLR 3002 A 1 HETATM 19 C C19 CLR . . . C 3 -8.747 10.516 10.765 1 59.77 ? C19 CLR 3002 A 1 HETATM 20 C C20 CLR . . . C 3 -8.397 3.318 10.975 1 50.57 ? C20 CLR 3002 A 1 HETATM 21 C C21 CLR . . . C 3 -9.564 3.209 11.953 1 42.56 ? C21 CLR 3002 A 1 HETATM 22 C C22 CLR . . . C 3 -7.619 2.004 10.857 1 49.95 ? C22 CLR 3002 A 1 HETATM 23 C C23 CLR . . . C 3 -8.372 0.754 11.306 1 43.26 ? C23 CLR 3002 A 1 HETATM 24 C C24 CLR . . . C 3 -7.491 -0.473 11.086 1 45.63 ? C24 CLR 3002 A 1 HETATM 25 C C25 CLR . . . C 3 -8.199 -1.803 11.339 1 53.59 ? C25 CLR 3002 A 1 HETATM 26 C C26 CLR . . . C 3 -9.251 -1.706 12.439 1 50.12 ? C26 CLR 3002 A 1 HETATM 27 C C27 CLR . . . C 3 -8.809 -2.345 10.052 1 62.58 ? C27 CLR 3002 A 1 HETATM 28 O O1 CLR . . . C 3 -6.925 14.342 12.948 1 52.95 ? O1 CLR 3002 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #