data_8DU3 # _model_server_result.job_id BTdSfmCikSy5_MEgaQF4zA _model_server_result.datetime_utc '2024-11-07 13:04:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8du3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":3007}' # _entry.id 8DU3 # _exptl.entry_id 8DU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DU3 _cell.length_a 39.6 _cell.length_b 179.8 _cell.length_c 141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 367 n n C10 C9 OLC doub 368 n n C10 C11 OLC sing 369 n n C9 C8 OLC sing 370 n n C17 C16 OLC sing 371 z n C11 C12 OLC sing 372 n n C8 C7 OLC sing 373 n n C24 C22 OLC sing 374 n n C24 O25 OLC sing 375 n n C16 C15 OLC sing 376 n n C12 C13 OLC sing 377 n n C7 C6 OLC sing 378 n n C15 C14 OLC sing 379 n n C13 C14 OLC sing 380 n n C6 C5 OLC sing 381 n n C5 C4 OLC sing 382 n n C4 C3 OLC sing 383 n n C3 C2 OLC sing 384 n n C2 C1 OLC sing 385 n n C21 C22 OLC sing 386 n n C21 O20 OLC sing 387 n n C1 O19 OLC doub 388 n n C1 O20 OLC sing 389 n n C22 O23 OLC sing 390 n n C18 H18 OLC sing 391 n n C18 H18A OLC sing 392 n n C18 H18B OLC sing 393 n n C10 H10 OLC sing 394 n n C9 H9 OLC sing 395 n n C17 H17 OLC sing 396 n n C17 H17A OLC sing 397 n n C11 H11 OLC sing 398 n n C11 H11A OLC sing 399 n n C8 H8 OLC sing 400 n n C8 H8A OLC sing 401 n n C24 H24 OLC sing 402 n n C24 H24A OLC sing 403 n n C16 H16 OLC sing 404 n n C16 H16A OLC sing 405 n n C12 H12 OLC sing 406 n n C12 H12A OLC sing 407 n n C7 H7 OLC sing 408 n n C7 H7A OLC sing 409 n n C15 H15 OLC sing 410 n n C15 H15A OLC sing 411 n n C13 H13 OLC sing 412 n n C13 H13A OLC sing 413 n n C6 H6 OLC sing 414 n n C6 H6A OLC sing 415 n n C14 H14 OLC sing 416 n n C14 H14A OLC sing 417 n n C5 H5 OLC sing 418 n n C5 H5A OLC sing 419 n n C4 H4 OLC sing 420 n n C4 H4A OLC sing 421 n n C3 H3 OLC sing 422 n n C3 H3A OLC sing 423 n n C2 H2 OLC sing 424 n n C2 H2A OLC sing 425 n n C21 H21 OLC sing 426 n n C21 H21A OLC sing 427 n n C22 H22 OLC sing 428 n n O25 HO25 OLC sing 429 n n O23 HO23 OLC sing 430 n n # _atom_sites.entry_id 8DU3 _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TKO A 1 3001 3001 TKO XXX . C 3 CLR A 1 3002 3002 CLR CLR . D 3 CLR A 1 3003 3003 CLR CLR . E 3 CLR A 1 3004 3004 CLR CLR . F 4 OLC A 1 3005 3005 OLC OLC . G 4 OLC A 1 3006 3006 OLC OLC . H 4 OLC A 1 3007 3007 OLC OLC . I 4 OLC A 1 3008 3008 OLC OLC . J 5 OLA A 1 3009 3011 OLA OLA . K 5 OLA A 1 3010 3012 OLA OLA . L 5 OLA A 1 3011 3014 OLA OLA . M 5 OLA A 1 3012 3015 OLA OLA . N 5 OLA A 1 3013 3016 OLA OLA . O 5 OLA A 1 3014 3018 OLA OLA . P 5 OLA A 1 3015 3019 OLA OLA . Q 5 OLA A 1 3016 3021 OLA OLA . R 5 OLA A 1 3017 3022 OLA OLA . S 5 OLA A 1 3018 3023 OLA OLA . T 5 OLA A 1 3019 3026 OLA OLA . U 5 OLA A 1 3020 3027 OLA OLA . V 5 OLA A 1 3021 3028 OLA OLA . W 5 OLA A 1 3022 3030 OLA OLA . X 5 OLA A 1 3023 3031 OLA OLA . Y 5 OLA A 1 3024 3032 OLA OLA . Z 5 OLA A 1 3025 3033 OLA OLA . AA 6 HOH A 1 3101 37 HOH HOH . AA 6 HOH A 2 3102 43 HOH HOH . AA 6 HOH A 3 3103 39 HOH HOH . AA 6 HOH A 4 3104 38 HOH HOH . AA 6 HOH A 5 3105 8 HOH HOH . AA 6 HOH A 6 3106 14 HOH HOH . AA 6 HOH A 7 3107 4 HOH HOH . AA 6 HOH A 8 3108 40 HOH HOH . AA 6 HOH A 9 3109 52 HOH HOH . AA 6 HOH A 10 3110 45 HOH HOH . AA 6 HOH A 11 3111 50 HOH HOH . AA 6 HOH A 12 3112 36 HOH HOH . AA 6 HOH A 13 3113 48 HOH HOH . AA 6 HOH A 14 3114 3 HOH HOH . AA 6 HOH A 15 3115 1 HOH HOH . AA 6 HOH A 16 3116 11 HOH HOH . AA 6 HOH A 17 3117 41 HOH HOH . AA 6 HOH A 18 3118 49 HOH HOH . AA 6 HOH A 19 3119 47 HOH HOH . AA 6 HOH A 20 3120 27 HOH HOH . AA 6 HOH A 21 3121 28 HOH HOH . AA 6 HOH A 22 3122 7 HOH HOH . AA 6 HOH A 23 3123 16 HOH HOH . AA 6 HOH A 24 3124 24 HOH HOH . AA 6 HOH A 25 3125 42 HOH HOH . AA 6 HOH A 26 3126 5 HOH HOH . AA 6 HOH A 27 3127 26 HOH HOH . AA 6 HOH A 28 3128 17 HOH HOH . AA 6 HOH A 29 3129 9 HOH HOH . AA 6 HOH A 30 3130 23 HOH HOH . AA 6 HOH A 31 3131 34 HOH HOH . AA 6 HOH A 32 3132 44 HOH HOH . AA 6 HOH A 33 3133 2 HOH HOH . AA 6 HOH A 34 3134 18 HOH HOH . AA 6 HOH A 35 3135 13 HOH HOH . AA 6 HOH A 36 3136 20 HOH HOH . AA 6 HOH A 37 3137 33 HOH HOH . AA 6 HOH A 38 3138 15 HOH HOH . AA 6 HOH A 39 3139 25 HOH HOH . AA 6 HOH A 40 3140 46 HOH HOH . AA 6 HOH A 41 3141 19 HOH HOH . AA 6 HOH A 42 3142 10 HOH HOH . AA 6 HOH A 43 3143 54 HOH HOH . AA 6 HOH A 44 3144 35 HOH HOH . AA 6 HOH A 45 3145 29 HOH HOH . AA 6 HOH A 46 3146 30 HOH HOH . AA 6 HOH A 47 3147 21 HOH HOH . AA 6 HOH A 48 3148 6 HOH HOH . AA 6 HOH A 49 3149 32 HOH HOH . AA 6 HOH A 50 3150 12 HOH HOH . AA 6 HOH A 51 3151 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . H 4 -3.101 2.207 24.031 1 59.88 ? C10 OLC 3007 A 1 HETATM 2 C C9 OLC . . . H 4 -2.882 3.5 24.279 1 59.66 ? C9 OLC 3007 A 1 HETATM 3 C C11 OLC . . . H 4 -3.966 1.332 24.865 1 65.14 ? C11 OLC 3007 A 1 HETATM 4 C C8 OLC . . . H 4 -3.472 4.25 25.418 1 49.18 ? C8 OLC 3007 A 1 HETATM 5 C C24 OLC . . . H 4 -3.299 17.022 25.663 1 81.16 ? C24 OLC 3007 A 1 HETATM 6 C C12 OLC . . . H 4 -3.787 -0.109 24.365 1 67.2 ? C12 OLC 3007 A 1 HETATM 7 C C7 OLC . . . H 4 -3.429 5.754 25.076 1 39.16 ? C7 OLC 3007 A 1 HETATM 8 C C13 OLC . . . H 4 -4.878 -1.006 24.912 1 61.15 ? C13 OLC 3007 A 1 HETATM 9 C C6 OLC . . . H 4 -3.343 6.595 26.329 1 49 ? C6 OLC 3007 A 1 HETATM 10 C C14 OLC . . . H 4 -4.472 -2.46 24.699 1 72.46 ? C14 OLC 3007 A 1 HETATM 11 C C5 OLC . . . H 4 -2.165 7.539 26.227 1 40.14 ? C5 OLC 3007 A 1 HETATM 12 C C4 OLC . . . H 4 -2.483 8.714 25.308 1 34.37 ? C4 OLC 3007 A 1 HETATM 13 C C3 OLC . . . H 4 -2.219 10.005 26.063 1 38.06 ? C3 OLC 3007 A 1 HETATM 14 C C2 OLC . . . H 4 -2.363 11.22 25.151 1 49.39 ? C2 OLC 3007 A 1 HETATM 15 C C21 OLC . . . H 4 -2.949 14.55 25.74 1 64.51 ? C21 OLC 3007 A 1 HETATM 16 C C1 OLC . . . H 4 -2.021 12.406 25.987 1 56.73 ? C1 OLC 3007 A 1 HETATM 17 C C22 OLC . . . H 4 -2.624 15.832 24.936 1 68.94 ? C22 OLC 3007 A 1 HETATM 18 O O19 OLC . . . H 4 -1.771 12.408 27.184 1 64.37 ? O19 OLC 3007 A 1 HETATM 19 O O25 OLC . . . H 4 -3.081 18.115 24.821 1 70.68 ? O25 OLC 3007 A 1 HETATM 20 O O23 OLC . . . H 4 -1.258 16.021 24.82 1 68.3 ? O23 OLC 3007 A 1 HETATM 21 O O20 OLC . . . H 4 -1.99 13.592 25.308 1 59.91 ? O20 OLC 3007 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #