data_8DU3 # _model_server_result.job_id zcMNQ5RfXZoG1dQwpk6_Ug _model_server_result.datetime_utc '2024-11-26 05:51:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8du3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":3024}' # _entry.id 8DU3 # _exptl.entry_id 8DU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DU3 _cell.length_a 39.6 _cell.length_b 179.8 _cell.length_c 141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 314 n n C1 O2 OLA sing 315 n n C1 C2 OLA sing 316 n n O2 HO2 OLA sing 317 n n C2 C3 OLA sing 318 n n C2 H21 OLA sing 319 n n C2 H22 OLA sing 320 n n C3 C4 OLA sing 321 n n C3 H31 OLA sing 322 n n C3 H32 OLA sing 323 n n C4 C5 OLA sing 324 n n C4 H41 OLA sing 325 n n C4 H42 OLA sing 326 n n C5 C6 OLA sing 327 n n C5 H51 OLA sing 328 n n C5 H52 OLA sing 329 n n C6 C7 OLA sing 330 n n C6 H61 OLA sing 331 n n C6 H62 OLA sing 332 n n C7 C8 OLA sing 333 n n C7 H71 OLA sing 334 n n C7 H72 OLA sing 335 n n C8 C9 OLA sing 336 n n C8 H81 OLA sing 337 n n C8 H82 OLA sing 338 n n C9 C10 OLA doub 339 z n C9 H9 OLA sing 340 n n C10 C11 OLA sing 341 n n C10 H10 OLA sing 342 n n C11 C12 OLA sing 343 n n C11 H111 OLA sing 344 n n C11 H112 OLA sing 345 n n C12 C13 OLA sing 346 n n C12 H121 OLA sing 347 n n C12 H122 OLA sing 348 n n C13 C14 OLA sing 349 n n C13 H131 OLA sing 350 n n C13 H132 OLA sing 351 n n C14 C15 OLA sing 352 n n C14 H141 OLA sing 353 n n C14 H142 OLA sing 354 n n C15 C16 OLA sing 355 n n C15 H151 OLA sing 356 n n C15 H152 OLA sing 357 n n C16 C17 OLA sing 358 n n C16 H161 OLA sing 359 n n C16 H162 OLA sing 360 n n C17 C18 OLA sing 361 n n C17 H171 OLA sing 362 n n C17 H172 OLA sing 363 n n C18 H181 OLA sing 364 n n C18 H182 OLA sing 365 n n C18 H183 OLA sing 366 n n # _atom_sites.entry_id 8DU3 _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TKO A 1 3001 3001 TKO XXX . C 3 CLR A 1 3002 3002 CLR CLR . D 3 CLR A 1 3003 3003 CLR CLR . E 3 CLR A 1 3004 3004 CLR CLR . F 4 OLC A 1 3005 3005 OLC OLC . G 4 OLC A 1 3006 3006 OLC OLC . H 4 OLC A 1 3007 3007 OLC OLC . I 4 OLC A 1 3008 3008 OLC OLC . J 5 OLA A 1 3009 3011 OLA OLA . K 5 OLA A 1 3010 3012 OLA OLA . L 5 OLA A 1 3011 3014 OLA OLA . M 5 OLA A 1 3012 3015 OLA OLA . N 5 OLA A 1 3013 3016 OLA OLA . O 5 OLA A 1 3014 3018 OLA OLA . P 5 OLA A 1 3015 3019 OLA OLA . Q 5 OLA A 1 3016 3021 OLA OLA . R 5 OLA A 1 3017 3022 OLA OLA . S 5 OLA A 1 3018 3023 OLA OLA . T 5 OLA A 1 3019 3026 OLA OLA . U 5 OLA A 1 3020 3027 OLA OLA . V 5 OLA A 1 3021 3028 OLA OLA . W 5 OLA A 1 3022 3030 OLA OLA . X 5 OLA A 1 3023 3031 OLA OLA . Y 5 OLA A 1 3024 3032 OLA OLA . Z 5 OLA A 1 3025 3033 OLA OLA . AA 6 HOH A 1 3101 37 HOH HOH . AA 6 HOH A 2 3102 43 HOH HOH . AA 6 HOH A 3 3103 39 HOH HOH . AA 6 HOH A 4 3104 38 HOH HOH . AA 6 HOH A 5 3105 8 HOH HOH . AA 6 HOH A 6 3106 14 HOH HOH . AA 6 HOH A 7 3107 4 HOH HOH . AA 6 HOH A 8 3108 40 HOH HOH . AA 6 HOH A 9 3109 52 HOH HOH . AA 6 HOH A 10 3110 45 HOH HOH . AA 6 HOH A 11 3111 50 HOH HOH . AA 6 HOH A 12 3112 36 HOH HOH . AA 6 HOH A 13 3113 48 HOH HOH . AA 6 HOH A 14 3114 3 HOH HOH . AA 6 HOH A 15 3115 1 HOH HOH . AA 6 HOH A 16 3116 11 HOH HOH . AA 6 HOH A 17 3117 41 HOH HOH . AA 6 HOH A 18 3118 49 HOH HOH . AA 6 HOH A 19 3119 47 HOH HOH . AA 6 HOH A 20 3120 27 HOH HOH . AA 6 HOH A 21 3121 28 HOH HOH . AA 6 HOH A 22 3122 7 HOH HOH . AA 6 HOH A 23 3123 16 HOH HOH . AA 6 HOH A 24 3124 24 HOH HOH . AA 6 HOH A 25 3125 42 HOH HOH . AA 6 HOH A 26 3126 5 HOH HOH . AA 6 HOH A 27 3127 26 HOH HOH . AA 6 HOH A 28 3128 17 HOH HOH . AA 6 HOH A 29 3129 9 HOH HOH . AA 6 HOH A 30 3130 23 HOH HOH . AA 6 HOH A 31 3131 34 HOH HOH . AA 6 HOH A 32 3132 44 HOH HOH . AA 6 HOH A 33 3133 2 HOH HOH . AA 6 HOH A 34 3134 18 HOH HOH . AA 6 HOH A 35 3135 13 HOH HOH . AA 6 HOH A 36 3136 20 HOH HOH . AA 6 HOH A 37 3137 33 HOH HOH . AA 6 HOH A 38 3138 15 HOH HOH . AA 6 HOH A 39 3139 25 HOH HOH . AA 6 HOH A 40 3140 46 HOH HOH . AA 6 HOH A 41 3141 19 HOH HOH . AA 6 HOH A 42 3142 10 HOH HOH . AA 6 HOH A 43 3143 54 HOH HOH . AA 6 HOH A 44 3144 35 HOH HOH . AA 6 HOH A 45 3145 29 HOH HOH . AA 6 HOH A 46 3146 30 HOH HOH . AA 6 HOH A 47 3147 21 HOH HOH . AA 6 HOH A 48 3148 6 HOH HOH . AA 6 HOH A 49 3149 32 HOH HOH . AA 6 HOH A 50 3150 12 HOH HOH . AA 6 HOH A 51 3151 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . Y 5 -37.076 -19.151 22.475 1 85.95 ? C1 OLA 3024 A 1 HETATM 2 O O1 OLA . . . Y 5 -38.02 -19.82 21.994 1 78.13 ? O1 OLA 3024 A 1 HETATM 3 O O2 OLA . . . Y 5 -36.26 -19.722 23.233 1 84.93 ? O2 OLA 3024 A 1 HETATM 4 C C2 OLA . . . Y 5 -36.922 -17.663 22.141 1 81.38 ? C2 OLA 3024 A 1 HETATM 5 C C3 OLA . . . Y 5 -36.977 -16.812 23.408 1 83.06 ? C3 OLA 3024 A 1 HETATM 6 C C4 OLA . . . Y 5 -37.917 -15.616 23.248 1 75.98 ? C4 OLA 3024 A 1 HETATM 7 C C5 OLA . . . Y 5 -37.356 -14.579 22.276 1 80.67 ? C5 OLA 3024 A 1 HETATM 8 C C6 OLA . . . Y 5 -37.663 -13.155 22.744 1 78.51 ? C6 OLA 3024 A 1 HETATM 9 C C7 OLA . . . Y 5 -37.263 -12.135 21.677 1 80.71 ? C7 OLA 3024 A 1 HETATM 10 C C8 OLA . . . Y 5 -37.598 -10.707 22.077 1 72.84 ? C8 OLA 3024 A 1 HETATM 11 C C9 OLA . . . Y 5 -37.598 -9.831 20.849 1 72.49 ? C9 OLA 3024 A 1 HETATM 12 C C10 OLA . . . Y 5 -38.116 -8.601 20.839 1 70.81 ? C10 OLA 3024 A 1 HETATM 13 C C11 OLA . . . Y 5 -38.749 -7.97 22.055 1 68.17 ? C11 OLA 3024 A 1 HETATM 14 C C12 OLA . . . Y 5 -38.37 -6.503 22.135 1 64.99 ? C12 OLA 3024 A 1 HETATM 15 C C13 OLA . . . Y 5 -36.992 -6.339 22.77 1 57.01 ? C13 OLA 3024 A 1 HETATM 16 C C14 OLA . . . Y 5 -36.434 -4.94 22.521 1 64.59 ? C14 OLA 3024 A 1 HETATM 17 C C15 OLA . . . Y 5 -36.006 -4.286 23.832 1 62.32 ? C15 OLA 3024 A 1 HETATM 18 C C16 OLA . . . Y 5 -35.493 -2.868 23.595 1 61.52 ? C16 OLA 3024 A 1 HETATM 19 C C17 OLA . . . Y 5 -36.633 -1.853 23.629 1 58.97 ? C17 OLA 3024 A 1 HETATM 20 C C18 OLA . . . Y 5 -36.252 -0.592 22.874 1 67.54 ? C18 OLA 3024 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #