data_8DUJ # _model_server_result.job_id 0-Q-pLP6NXYqO6oO6gZaEQ _model_server_result.datetime_utc '2024-11-21 23:53:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8duj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":5102}' # _entry.id 8DUJ # _exptl.entry_id 8DUJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DUJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 S N N ? 6 W N N ? 6 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 M CYS 3 1_555 A SG CYS 17 M CYS 17 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 3 M CYS 3 1_555 A SG CYS 17 M CYS 17 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 10 M CYS 10 1_555 A SG CYS 21 M CYS 21 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 10 M CYS 10 1_555 A SG CYS 21 M CYS 21 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 16 M CYS 16 1_555 A SG CYS 32 M CYS 32 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 16 M CYS 16 1_555 A SG CYS 32 M CYS 32 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 2310 G CYS 2310 1_555 B SG CYS 2326 G CYS 2326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 4876 G CYS 4876 1_555 B SG CYS 4882 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 E SG CYS 2310 A CYS 2310 1_555 E SG CYS 2326 A CYS 2326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 E SG CYS 4876 A CYS 4876 1_555 E SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 H SG CYS 2310 D CYS 2310 1_555 H SG CYS 2326 D CYS 2326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 H SG CYS 4876 D CYS 4876 1_555 H SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 K SG CYS 36 J CYS 36 1_555 K SG CYS 65 J CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 K SG CYS 2310 J CYS 2310 1_555 K SG CYS 2326 J CYS 2326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 K SG CYS 4876 J CYS 4876 1_555 K SG CYS 4882 J CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 B OE1 GLU 3893 G GLU 3893 1_555 O CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 B OE2 GLU 3893 G GLU 3893 1_555 O CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc3 B OE1 GLU 3967 G GLU 3967 1_555 O CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc4 B OE2 GLU 3967 G GLU 3967 1_555 O CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc5 B SG CYS 4958 G CYS 4958 1_555 Q ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc6 B SG CYS 4961 G CYS 4961 1_555 Q ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 B NE2 HIS 4978 G HIS 4978 1_555 Q ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc8 B ND1 HIS 4983 G HIS 4983 1_555 Q ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 B O THR 5001 G THR 5001 1_555 O CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc10 E OE1 GLU 3967 A GLU 3967 1_555 S CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc11 E OE1 GLN 3970 A GLN 3970 1_555 S CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc12 E SG CYS 4958 A CYS 4958 1_555 U ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc13 E SG CYS 4961 A CYS 4961 1_555 U ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc14 E NE2 HIS 4978 A HIS 4978 1_555 U ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc15 E ND1 HIS 4983 A HIS 4983 1_555 U ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc16 E O THR 5001 A THR 5001 1_555 S CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc17 H OE1 GLU 3893 D GLU 3893 1_555 W CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc18 H OE2 GLU 3893 D GLU 3893 1_555 W CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc19 H OE1 GLU 3967 D GLU 3967 1_555 W CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc20 H OE2 GLU 3967 D GLU 3967 1_555 W CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc21 H SG CYS 4958 D CYS 4958 1_555 Y ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc22 H SG CYS 4961 D CYS 4961 1_555 Y ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc23 H NE2 HIS 4978 D HIS 4978 1_555 Y ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc24 H ND1 HIS 4983 D HIS 4983 1_555 Y ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc25 H O THR 5001 D THR 5001 1_555 W CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc26 K OE1 GLU 3893 J GLU 3893 1_555 AA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc27 K OE1 GLU 3967 J GLU 3967 1_555 AA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc28 K OE2 GLU 3967 J GLU 3967 1_555 AA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc29 K OE1 GLN 3970 J GLN 3970 1_555 AA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc30 K SG CYS 4958 J CYS 4958 1_555 CA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc31 K SG CYS 4961 J CYS 4961 1_555 CA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc32 K NE2 HIS 4978 J HIS 4978 1_555 CA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc33 K ND1 HIS 4983 J HIS 4983 1_555 CA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc34 K O THR 5001 J THR 5001 1_555 AA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DUJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 5 CFF G 1 5101 5101 CFF CFF . O 6 CA G 1 5102 5201 CA CA . P 7 ATP G 1 5103 5301 ATP ATP . Q 8 ZN G 1 5104 5401 ZN ZN . R 5 CFF A 1 5101 5101 CFF CFF . S 6 CA A 1 5102 5201 CA CA . T 7 ATP A 1 5103 5301 ATP ATP . U 8 ZN A 1 5104 5401 ZN ZN . V 5 CFF D 1 5101 5101 CFF CFF . W 6 CA D 1 5102 5201 CA CA . X 7 ATP D 1 5103 5301 ATP ATP . Y 8 ZN D 1 5104 5401 ZN ZN . Z 5 CFF J 1 5101 5101 CFF CFF . AA 6 CA J 1 5102 5201 CA CA . BA 7 ATP J 1 5103 5301 ATP ATP . CA 8 ZN J 1 5104 5401 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id W _atom_site.label_entity_id 6 _atom_site.Cartn_x 254.692 _atom_site.Cartn_y 276.764 _atom_site.Cartn_z 214.043 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5102 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 163 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #