data_8DVE # _model_server_result.job_id BzAxyl3clA1Z-eE6K1avFA _model_server_result.datetime_utc '2024-10-19 16:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":5102}' # _entry.id 8DVE # _exptl.entry_id 8DVE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DVE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 R N N ? 5 V N N ? 5 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4876 D CYS 4876 1_555 A SG CYS 4882 D CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 D SG CYS 4876 A CYS 4876 1_555 D SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 G SG CYS 4876 G CYS 4876 1_555 G SG CYS 4882 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 J SG CYS 4876 J CYS 4876 1_555 J SG CYS 4882 J CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 3893 D GLU 3893 1_555 N CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 A OE2 GLU 3893 D GLU 3893 1_555 N CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A OE1 GLU 3967 D GLU 3967 1_555 N CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A OE2 GLU 3967 D GLU 3967 1_555 N CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc5 A SG CYS 4961 D CYS 4961 1_555 P ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 A NE2 HIS 4978 D HIS 4978 1_555 P ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 A ND1 HIS 4983 D HIS 4983 1_555 P ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 A O THR 5001 D THR 5001 1_555 N CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc9 D OE1 GLU 3893 A GLU 3893 1_555 R CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc10 D OE2 GLU 3893 A GLU 3893 1_555 R CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc11 D OE1 GLU 3967 A GLU 3967 1_555 R CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc12 D OE2 GLU 3967 A GLU 3967 1_555 R CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc13 D SG CYS 4958 A CYS 4958 1_555 T ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc14 D SG CYS 4961 A CYS 4961 1_555 T ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 D NE2 HIS 4978 A HIS 4978 1_555 T ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc16 D ND1 HIS 4983 A HIS 4983 1_555 T ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc17 D O THR 5001 A THR 5001 1_555 R CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc18 D OG1 THR 5001 A THR 5001 1_555 R CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc19 G OE1 GLU 3893 G GLU 3893 1_555 V CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc20 G OE2 GLU 3893 G GLU 3893 1_555 V CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc21 G OE1 GLU 3967 G GLU 3967 1_555 V CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc22 G OE2 GLU 3967 G GLU 3967 1_555 V CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc23 G SG CYS 4958 G CYS 4958 1_555 X ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc24 G SG CYS 4961 G CYS 4961 1_555 X ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc25 G NE2 HIS 4978 G HIS 4978 1_555 X ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc26 G ND1 HIS 4983 G HIS 4983 1_555 X ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc27 G O THR 5001 G THR 5001 1_555 V CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc28 J OE1 GLU 3893 J GLU 3893 1_555 Z CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc29 J OE2 GLU 3893 J GLU 3893 1_555 Z CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc30 J OE1 GLU 3967 J GLU 3967 1_555 Z CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc31 J OE2 GLU 3967 J GLU 3967 1_555 Z CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc32 J OE1 GLN 3970 J GLN 3970 1_555 Z CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc33 J SG CYS 4961 J CYS 4961 1_555 BA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc34 J NE2 HIS 4978 J HIS 4978 1_555 BA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc35 J ND1 HIS 4983 J HIS 4983 1_555 BA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc36 J O THR 5001 J THR 5001 1_555 Z CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc37 J SG CYS 5027 J CYS 5027 1_555 BA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DVE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 CFF D 1 5101 5101 CFF CFF . N 5 CA D 1 5102 5201 CA CA . O 6 ATP D 1 5103 5301 ATP ATP . P 7 ZN D 1 5104 5401 ZN ZN . Q 4 CFF A 1 5101 5101 CFF CFF . R 5 CA A 1 5102 5201 CA CA . S 6 ATP A 1 5103 5301 ATP ATP . T 7 ZN A 1 5104 5401 ZN ZN . U 4 CFF G 1 5101 5101 CFF CFF . V 5 CA G 1 5102 5201 CA CA . W 6 ATP G 1 5103 5301 ATP ATP . X 7 ZN G 1 5104 5401 ZN ZN . Y 4 CFF J 1 5101 5101 CFF CFF . Z 5 CA J 1 5102 5201 CA CA . AA 6 ATP J 1 5103 5301 ATP ATP . BA 7 ZN J 1 5104 5401 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id V _atom_site.label_entity_id 5 _atom_site.Cartn_x 225.399 _atom_site.Cartn_y 284.986 _atom_site.Cartn_z 244.101 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 95.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5102 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 292 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 189 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #