data_8DVH # _model_server_result.job_id ew5FG3T3w0vmb8gvYIWPwQ _model_server_result.datetime_utc '2024-11-22 16:08:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8DVH # _exptl.entry_id 8DVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8DVH _cell.length_a 89.892 _cell.length_b 89.892 _cell.length_c 83.95 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 12 A LEU 358 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A OG SER 99 A SER 445 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc3 A OG1 THR 124 A THR 470 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 D NA NA . A NA 602 1_555 G O HOH . A HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc5 B O LEU 12 B LEU 358 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc6 B O SER 99 B SER 445 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc7 B OG SER 99 B SER 445 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc8 B OG1 THR 124 B THR 470 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc9 F NA NA . B NA 602 1_555 H O HOH . B HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? # _chem_comp.formula 'C19 H25 B N4 O4' _chem_comp.formula_weight 384.237 _chem_comp.id BO2 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BORTEZOMIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BO2 sing 70 n y N1 C6 BO2 doub 71 n y C2 C3 BO2 doub 72 n y C2 C7 BO2 sing 73 n n C3 N4 BO2 sing 74 n y C3 H3 BO2 sing 75 n n N4 C5 BO2 doub 76 n y C5 C6 BO2 sing 77 n y C5 H5 BO2 sing 78 n n C6 H6 BO2 sing 79 n n C7 O8 BO2 doub 80 n n C7 N9 BO2 sing 81 n n N9 C10 BO2 sing 82 n n N9 HN9 BO2 sing 83 n n C10 C11 BO2 sing 84 n n C10 C18 BO2 sing 85 n n C10 H10 BO2 sing 86 n n C11 C12 BO2 sing 87 n n C11 H111 BO2 sing 88 n n C11 H112 BO2 sing 89 n n C12 C13 BO2 sing 90 n y C12 C17 BO2 doub 91 n y C13 C14 BO2 doub 92 n y C13 H13 BO2 sing 93 n n C14 C15 BO2 sing 94 n y C14 H14 BO2 sing 95 n n C15 C16 BO2 doub 96 n y C15 H15 BO2 sing 97 n n C16 C17 BO2 sing 98 n y C16 H16 BO2 sing 99 n n C17 H17 BO2 sing 100 n n C18 O19 BO2 doub 101 n n C18 N20 BO2 sing 102 n n N20 C21 BO2 sing 103 n n N20 H20 BO2 sing 104 n n C21 C22 BO2 sing 105 n n C21 B26 BO2 sing 106 n n C21 H21 BO2 sing 107 n n C22 C23 BO2 sing 108 n n C22 H221 BO2 sing 109 n n C22 H222 BO2 sing 110 n n C23 C24 BO2 sing 111 n n C23 C25 BO2 sing 112 n n C23 H23 BO2 sing 113 n n C24 H241 BO2 sing 114 n n C24 H242 BO2 sing 115 n n C24 H243 BO2 sing 116 n n C25 H251 BO2 sing 117 n n C25 H252 BO2 sing 118 n n C25 H253 BO2 sing 119 n n B26 O27 BO2 sing 120 n n B26 O28 BO2 sing 121 n n O27 H27 BO2 sing 122 n n O28 H28 BO2 sing 123 n n # _atom_sites.entry_id 8DVH _atom_sites.fract_transf_matrix[1][1] 0.011124 _atom_sites.fract_transf_matrix[1][2] 0.006423 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BO2 A 1 601 601 BO2 BO2 . D 3 NA A 1 602 2 NA NA . E 2 BO2 B 1 601 601 BO2 BO2 . F 3 NA B 1 602 1 NA NA . G 4 HOH A 1 701 152 HOH HOH . G 4 HOH A 2 702 113 HOH HOH . G 4 HOH A 3 703 14 HOH HOH . G 4 HOH A 4 704 115 HOH HOH . G 4 HOH A 5 705 46 HOH HOH . G 4 HOH A 6 706 135 HOH HOH . G 4 HOH A 7 707 122 HOH HOH . G 4 HOH A 8 708 90 HOH HOH . G 4 HOH A 9 709 69 HOH HOH . G 4 HOH A 10 710 134 HOH HOH . G 4 HOH A 11 711 19 HOH HOH . G 4 HOH A 12 712 119 HOH HOH . G 4 HOH A 13 713 128 HOH HOH . G 4 HOH A 14 714 126 HOH HOH . G 4 HOH A 15 715 62 HOH HOH . G 4 HOH A 16 716 21 HOH HOH . G 4 HOH A 17 717 159 HOH HOH . G 4 HOH A 18 718 22 HOH HOH . G 4 HOH A 19 719 3 HOH HOH . G 4 HOH A 20 720 47 HOH HOH . G 4 HOH A 21 721 20 HOH HOH . G 4 HOH A 22 722 110 HOH HOH . G 4 HOH A 23 723 17 HOH HOH . G 4 HOH A 24 724 155 HOH HOH . G 4 HOH A 25 725 124 HOH HOH . G 4 HOH A 26 726 43 HOH HOH . G 4 HOH A 27 727 77 HOH HOH . G 4 HOH A 28 728 64 HOH HOH . G 4 HOH A 29 729 99 HOH HOH . G 4 HOH A 30 730 58 HOH HOH . G 4 HOH A 31 731 93 HOH HOH . G 4 HOH A 32 732 34 HOH HOH . G 4 HOH A 33 733 84 HOH HOH . G 4 HOH A 34 734 32 HOH HOH . G 4 HOH A 35 735 80 HOH HOH . G 4 HOH A 36 736 1 HOH HOH . G 4 HOH A 37 737 109 HOH HOH . G 4 HOH A 38 738 12 HOH HOH . G 4 HOH A 39 739 117 HOH HOH . G 4 HOH A 40 740 7 HOH HOH . G 4 HOH A 41 741 29 HOH HOH . G 4 HOH A 42 742 36 HOH HOH . G 4 HOH A 43 743 79 HOH HOH . G 4 HOH A 44 744 148 HOH HOH . G 4 HOH A 45 745 40 HOH HOH . G 4 HOH A 46 746 10 HOH HOH . G 4 HOH A 47 747 15 HOH HOH . G 4 HOH A 48 748 49 HOH HOH . G 4 HOH A 49 749 39 HOH HOH . G 4 HOH A 50 750 48 HOH HOH . G 4 HOH A 51 751 91 HOH HOH . G 4 HOH A 52 752 65 HOH HOH . G 4 HOH A 53 753 87 HOH HOH . G 4 HOH A 54 754 112 HOH HOH . G 4 HOH A 55 755 76 HOH HOH . G 4 HOH A 56 756 41 HOH HOH . G 4 HOH A 57 757 149 HOH HOH . G 4 HOH A 58 758 129 HOH HOH . G 4 HOH A 59 759 107 HOH HOH . G 4 HOH A 60 760 9 HOH HOH . G 4 HOH A 61 761 140 HOH HOH . G 4 HOH A 62 762 50 HOH HOH . G 4 HOH A 63 763 71 HOH HOH . G 4 HOH A 64 764 156 HOH HOH . G 4 HOH A 65 765 111 HOH HOH . G 4 HOH A 66 766 78 HOH HOH . G 4 HOH A 67 767 123 HOH HOH . G 4 HOH A 68 768 114 HOH HOH . G 4 HOH A 69 769 18 HOH HOH . G 4 HOH A 70 770 51 HOH HOH . G 4 HOH A 71 771 31 HOH HOH . G 4 HOH A 72 772 83 HOH HOH . G 4 HOH A 73 773 53 HOH HOH . G 4 HOH A 74 774 68 HOH HOH . G 4 HOH A 75 775 154 HOH HOH . G 4 HOH A 76 776 89 HOH HOH . G 4 HOH A 77 777 105 HOH HOH . G 4 HOH A 78 778 153 HOH HOH . G 4 HOH A 79 779 145 HOH HOH . G 4 HOH A 80 780 121 HOH HOH . G 4 HOH A 81 781 88 HOH HOH . G 4 HOH A 82 782 35 HOH HOH . G 4 HOH A 83 783 56 HOH HOH . G 4 HOH A 84 784 66 HOH HOH . G 4 HOH A 85 785 116 HOH HOH . H 4 HOH B 1 701 127 HOH HOH . H 4 HOH B 2 702 54 HOH HOH . H 4 HOH B 3 703 4 HOH HOH . H 4 HOH B 4 704 103 HOH HOH . H 4 HOH B 5 705 27 HOH HOH . H 4 HOH B 6 706 95 HOH HOH . H 4 HOH B 7 707 92 HOH HOH . H 4 HOH B 8 708 158 HOH HOH . H 4 HOH B 9 709 102 HOH HOH . H 4 HOH B 10 710 28 HOH HOH . H 4 HOH B 11 711 82 HOH HOH . H 4 HOH B 12 712 42 HOH HOH . H 4 HOH B 13 713 25 HOH HOH . H 4 HOH B 14 714 37 HOH HOH . H 4 HOH B 15 715 147 HOH HOH . H 4 HOH B 16 716 6 HOH HOH . H 4 HOH B 17 717 5 HOH HOH . H 4 HOH B 18 718 45 HOH HOH . H 4 HOH B 19 719 132 HOH HOH . H 4 HOH B 20 720 85 HOH HOH . H 4 HOH B 21 721 63 HOH HOH . H 4 HOH B 22 722 86 HOH HOH . H 4 HOH B 23 723 11 HOH HOH . H 4 HOH B 24 724 60 HOH HOH . H 4 HOH B 25 725 141 HOH HOH . H 4 HOH B 26 726 59 HOH HOH . H 4 HOH B 27 727 23 HOH HOH . H 4 HOH B 28 728 30 HOH HOH . H 4 HOH B 29 729 74 HOH HOH . H 4 HOH B 30 730 44 HOH HOH . H 4 HOH B 31 731 52 HOH HOH . H 4 HOH B 32 732 133 HOH HOH . H 4 HOH B 33 733 57 HOH HOH . H 4 HOH B 34 734 146 HOH HOH . H 4 HOH B 35 735 137 HOH HOH . H 4 HOH B 36 736 70 HOH HOH . H 4 HOH B 37 737 120 HOH HOH . H 4 HOH B 38 738 118 HOH HOH . H 4 HOH B 39 739 81 HOH HOH . H 4 HOH B 40 740 136 HOH HOH . H 4 HOH B 41 741 16 HOH HOH . H 4 HOH B 42 742 72 HOH HOH . H 4 HOH B 43 743 2 HOH HOH . H 4 HOH B 44 744 101 HOH HOH . H 4 HOH B 45 745 98 HOH HOH . H 4 HOH B 46 746 38 HOH HOH . H 4 HOH B 47 747 33 HOH HOH . H 4 HOH B 48 748 100 HOH HOH . H 4 HOH B 49 749 96 HOH HOH . H 4 HOH B 50 750 94 HOH HOH . H 4 HOH B 51 751 73 HOH HOH . H 4 HOH B 52 752 24 HOH HOH . H 4 HOH B 53 753 61 HOH HOH . H 4 HOH B 54 754 67 HOH HOH . H 4 HOH B 55 755 13 HOH HOH . H 4 HOH B 56 756 130 HOH HOH . H 4 HOH B 57 757 144 HOH HOH . H 4 HOH B 58 758 26 HOH HOH . H 4 HOH B 59 759 125 HOH HOH . H 4 HOH B 60 760 75 HOH HOH . H 4 HOH B 61 761 151 HOH HOH . H 4 HOH B 62 762 8 HOH HOH . H 4 HOH B 63 763 97 HOH HOH . H 4 HOH B 64 764 157 HOH HOH . H 4 HOH B 65 765 138 HOH HOH . H 4 HOH B 66 766 104 HOH HOH . H 4 HOH B 67 767 108 HOH HOH . H 4 HOH B 68 768 139 HOH HOH . H 4 HOH B 69 769 150 HOH HOH . H 4 HOH B 70 770 143 HOH HOH . H 4 HOH B 71 771 142 HOH HOH . H 4 HOH B 72 772 55 HOH HOH . H 4 HOH B 73 773 106 HOH HOH . H 4 HOH B 74 774 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BO2 . . . C 2 35.737 4.084 52.948 1 53.19 ? N1 BO2 601 A 1 HETATM 2 C C2 BO2 . . . C 2 36.58 3.046 53.103 1 44.87 ? C2 BO2 601 A 1 HETATM 3 C C3 BO2 . . . C 2 36.084 1.859 53.649 1 48.07 ? C3 BO2 601 A 1 HETATM 4 N N4 BO2 . . . C 2 34.794 1.733 54.016 1 49.91 ? N4 BO2 601 A 1 HETATM 5 C C5 BO2 . . . C 2 33.964 2.762 53.879 1 54.46 ? C5 BO2 601 A 1 HETATM 6 C C6 BO2 . . . C 2 34.46 3.949 53.334 1 55.63 ? C6 BO2 601 A 1 HETATM 7 C C7 BO2 . . . C 2 38.004 3.183 52.657 1 42.04 ? C7 BO2 601 A 1 HETATM 8 O O8 BO2 . . . C 2 38.375 4.135 51.964 1 42.34 ? O8 BO2 601 A 1 HETATM 9 N N9 BO2 . . . C 2 38.83 2.224 53 1 33.1 ? N9 BO2 601 A 1 HETATM 10 C C10 BO2 . . . C 2 40.209 2.232 52.57 1 33.31 ? C10 BO2 601 A 1 HETATM 11 C C11 BO2 . . . C 2 41.122 2.085 53.786 1 31.49 ? C11 BO2 601 A 1 HETATM 12 C C12 BO2 . . . C 2 42.552 2.178 53.28 1 35.94 ? C12 BO2 601 A 1 HETATM 13 C C13 BO2 . . . C 2 43.074 3.408 52.892 1 37.72 ? C13 BO2 601 A 1 HETATM 14 C C14 BO2 . . . C 2 44.386 3.491 52.41 1 37.9 ? C14 BO2 601 A 1 HETATM 15 C C15 BO2 . . . C 2 45.178 2.355 52.323 1 38.86 ? C15 BO2 601 A 1 HETATM 16 C C16 BO2 . . . C 2 44.664 1.118 52.714 1 37.8 ? C16 BO2 601 A 1 HETATM 17 C C17 BO2 . . . C 2 43.352 1.042 53.194 1 37.16 ? C17 BO2 601 A 1 HETATM 18 C C18 BO2 . . . C 2 40.309 1.079 51.594 1 30.23 ? C18 BO2 601 A 1 HETATM 19 O O19 BO2 . . . C 2 40.047 -0.046 52.01 1 29.26 ? O19 BO2 601 A 1 HETATM 20 N N20 BO2 . . . C 2 40.635 1.354 50.323 1 29.42 ? N20 BO2 601 A 1 HETATM 21 C C21 BO2 . . . C 2 40.754 0.314 49.281 1 29.14 ? C21 BO2 601 A 1 HETATM 22 C C22 BO2 . . . C 2 40.713 1.032 47.921 1 27.9 ? C22 BO2 601 A 1 HETATM 23 C C23 BO2 . . . C 2 39.49 1.89 47.689 1 29.21 ? C23 BO2 601 A 1 HETATM 24 C C24 BO2 . . . C 2 39.788 2.786 46.491 1 29.66 ? C24 BO2 601 A 1 HETATM 25 C C25 BO2 . . . C 2 38.261 0.996 47.55 1 31.58 ? C25 BO2 601 A 1 HETATM 26 B B26 BO2 . . . C 2 42.198 -0.424 49.384 1 27.63 ? B26 BO2 601 A 1 HETATM 27 O O27 BO2 . . . C 2 43.465 0.446 49.233 1 33.07 ? O27 BO2 601 A 1 HETATM 28 O O28 BO2 . . . C 2 42.417 -1.312 50.603 1 32.11 ? O28 BO2 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #