data_8DVH
#
_model_server_result.job_id            HRyfkzU39P0uZHkaHROlyg 
_model_server_result.datetime_utc      '2024-11-13 05:55:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dvh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    8DVH 
#
_exptl.entry_id    8DVH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8DVH 
_cell.length_a            89.892 
_cell.length_b            89.892 
_cell.length_c            83.95 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DVH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 12 A LEU 358 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc2 A OG SER 99 A SER 445 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc3 A OG1 THR 124 A THR 470 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc4 D NA NA . A NA 602 1_555 G O HOH . A HOH 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc5 B O LEU 12 B LEU 358 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc6 B O SER 99 B SER 445 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc7 B OG SER 99 B SER 445 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc8 B OG1 THR 124 B THR 470 1_555 F NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc9 F NA NA . B NA 602 1_555 H O HOH . B HOH 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8DVH 
_atom_sites.fract_transf_matrix[1][1]    0.011124 
_atom_sites.fract_transf_matrix[1][2]    0.006423 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BO2 A 1 601 601 BO2 BO2 . 
D 3 NA A 1 602 2 NA NA . 
E 2 BO2 B 1 601 601 BO2 BO2 . 
F 3 NA B 1 602 1 NA NA . 
G 4 HOH A 1 701 152 HOH HOH . 
G 4 HOH A 2 702 113 HOH HOH . 
G 4 HOH A 3 703 14 HOH HOH . 
G 4 HOH A 4 704 115 HOH HOH . 
G 4 HOH A 5 705 46 HOH HOH . 
G 4 HOH A 6 706 135 HOH HOH . 
G 4 HOH A 7 707 122 HOH HOH . 
G 4 HOH A 8 708 90 HOH HOH . 
G 4 HOH A 9 709 69 HOH HOH . 
G 4 HOH A 10 710 134 HOH HOH . 
G 4 HOH A 11 711 19 HOH HOH . 
G 4 HOH A 12 712 119 HOH HOH . 
G 4 HOH A 13 713 128 HOH HOH . 
G 4 HOH A 14 714 126 HOH HOH . 
G 4 HOH A 15 715 62 HOH HOH . 
G 4 HOH A 16 716 21 HOH HOH . 
G 4 HOH A 17 717 159 HOH HOH . 
G 4 HOH A 18 718 22 HOH HOH . 
G 4 HOH A 19 719 3 HOH HOH . 
G 4 HOH A 20 720 47 HOH HOH . 
G 4 HOH A 21 721 20 HOH HOH . 
G 4 HOH A 22 722 110 HOH HOH . 
G 4 HOH A 23 723 17 HOH HOH . 
G 4 HOH A 24 724 155 HOH HOH . 
G 4 HOH A 25 725 124 HOH HOH . 
G 4 HOH A 26 726 43 HOH HOH . 
G 4 HOH A 27 727 77 HOH HOH . 
G 4 HOH A 28 728 64 HOH HOH . 
G 4 HOH A 29 729 99 HOH HOH . 
G 4 HOH A 30 730 58 HOH HOH . 
G 4 HOH A 31 731 93 HOH HOH . 
G 4 HOH A 32 732 34 HOH HOH . 
G 4 HOH A 33 733 84 HOH HOH . 
G 4 HOH A 34 734 32 HOH HOH . 
G 4 HOH A 35 735 80 HOH HOH . 
G 4 HOH A 36 736 1 HOH HOH . 
G 4 HOH A 37 737 109 HOH HOH . 
G 4 HOH A 38 738 12 HOH HOH . 
G 4 HOH A 39 739 117 HOH HOH . 
G 4 HOH A 40 740 7 HOH HOH . 
G 4 HOH A 41 741 29 HOH HOH . 
G 4 HOH A 42 742 36 HOH HOH . 
G 4 HOH A 43 743 79 HOH HOH . 
G 4 HOH A 44 744 148 HOH HOH . 
G 4 HOH A 45 745 40 HOH HOH . 
G 4 HOH A 46 746 10 HOH HOH . 
G 4 HOH A 47 747 15 HOH HOH . 
G 4 HOH A 48 748 49 HOH HOH . 
G 4 HOH A 49 749 39 HOH HOH . 
G 4 HOH A 50 750 48 HOH HOH . 
G 4 HOH A 51 751 91 HOH HOH . 
G 4 HOH A 52 752 65 HOH HOH . 
G 4 HOH A 53 753 87 HOH HOH . 
G 4 HOH A 54 754 112 HOH HOH . 
G 4 HOH A 55 755 76 HOH HOH . 
G 4 HOH A 56 756 41 HOH HOH . 
G 4 HOH A 57 757 149 HOH HOH . 
G 4 HOH A 58 758 129 HOH HOH . 
G 4 HOH A 59 759 107 HOH HOH . 
G 4 HOH A 60 760 9 HOH HOH . 
G 4 HOH A 61 761 140 HOH HOH . 
G 4 HOH A 62 762 50 HOH HOH . 
G 4 HOH A 63 763 71 HOH HOH . 
G 4 HOH A 64 764 156 HOH HOH . 
G 4 HOH A 65 765 111 HOH HOH . 
G 4 HOH A 66 766 78 HOH HOH . 
G 4 HOH A 67 767 123 HOH HOH . 
G 4 HOH A 68 768 114 HOH HOH . 
G 4 HOH A 69 769 18 HOH HOH . 
G 4 HOH A 70 770 51 HOH HOH . 
G 4 HOH A 71 771 31 HOH HOH . 
G 4 HOH A 72 772 83 HOH HOH . 
G 4 HOH A 73 773 53 HOH HOH . 
G 4 HOH A 74 774 68 HOH HOH . 
G 4 HOH A 75 775 154 HOH HOH . 
G 4 HOH A 76 776 89 HOH HOH . 
G 4 HOH A 77 777 105 HOH HOH . 
G 4 HOH A 78 778 153 HOH HOH . 
G 4 HOH A 79 779 145 HOH HOH . 
G 4 HOH A 80 780 121 HOH HOH . 
G 4 HOH A 81 781 88 HOH HOH . 
G 4 HOH A 82 782 35 HOH HOH . 
G 4 HOH A 83 783 56 HOH HOH . 
G 4 HOH A 84 784 66 HOH HOH . 
G 4 HOH A 85 785 116 HOH HOH . 
H 4 HOH B 1 701 127 HOH HOH . 
H 4 HOH B 2 702 54 HOH HOH . 
H 4 HOH B 3 703 4 HOH HOH . 
H 4 HOH B 4 704 103 HOH HOH . 
H 4 HOH B 5 705 27 HOH HOH . 
H 4 HOH B 6 706 95 HOH HOH . 
H 4 HOH B 7 707 92 HOH HOH . 
H 4 HOH B 8 708 158 HOH HOH . 
H 4 HOH B 9 709 102 HOH HOH . 
H 4 HOH B 10 710 28 HOH HOH . 
H 4 HOH B 11 711 82 HOH HOH . 
H 4 HOH B 12 712 42 HOH HOH . 
H 4 HOH B 13 713 25 HOH HOH . 
H 4 HOH B 14 714 37 HOH HOH . 
H 4 HOH B 15 715 147 HOH HOH . 
H 4 HOH B 16 716 6 HOH HOH . 
H 4 HOH B 17 717 5 HOH HOH . 
H 4 HOH B 18 718 45 HOH HOH . 
H 4 HOH B 19 719 132 HOH HOH . 
H 4 HOH B 20 720 85 HOH HOH . 
H 4 HOH B 21 721 63 HOH HOH . 
H 4 HOH B 22 722 86 HOH HOH . 
H 4 HOH B 23 723 11 HOH HOH . 
H 4 HOH B 24 724 60 HOH HOH . 
H 4 HOH B 25 725 141 HOH HOH . 
H 4 HOH B 26 726 59 HOH HOH . 
H 4 HOH B 27 727 23 HOH HOH . 
H 4 HOH B 28 728 30 HOH HOH . 
H 4 HOH B 29 729 74 HOH HOH . 
H 4 HOH B 30 730 44 HOH HOH . 
H 4 HOH B 31 731 52 HOH HOH . 
H 4 HOH B 32 732 133 HOH HOH . 
H 4 HOH B 33 733 57 HOH HOH . 
H 4 HOH B 34 734 146 HOH HOH . 
H 4 HOH B 35 735 137 HOH HOH . 
H 4 HOH B 36 736 70 HOH HOH . 
H 4 HOH B 37 737 120 HOH HOH . 
H 4 HOH B 38 738 118 HOH HOH . 
H 4 HOH B 39 739 81 HOH HOH . 
H 4 HOH B 40 740 136 HOH HOH . 
H 4 HOH B 41 741 16 HOH HOH . 
H 4 HOH B 42 742 72 HOH HOH . 
H 4 HOH B 43 743 2 HOH HOH . 
H 4 HOH B 44 744 101 HOH HOH . 
H 4 HOH B 45 745 98 HOH HOH . 
H 4 HOH B 46 746 38 HOH HOH . 
H 4 HOH B 47 747 33 HOH HOH . 
H 4 HOH B 48 748 100 HOH HOH . 
H 4 HOH B 49 749 96 HOH HOH . 
H 4 HOH B 50 750 94 HOH HOH . 
H 4 HOH B 51 751 73 HOH HOH . 
H 4 HOH B 52 752 24 HOH HOH . 
H 4 HOH B 53 753 61 HOH HOH . 
H 4 HOH B 54 754 67 HOH HOH . 
H 4 HOH B 55 755 13 HOH HOH . 
H 4 HOH B 56 756 130 HOH HOH . 
H 4 HOH B 57 757 144 HOH HOH . 
H 4 HOH B 58 758 26 HOH HOH . 
H 4 HOH B 59 759 125 HOH HOH . 
H 4 HOH B 60 760 75 HOH HOH . 
H 4 HOH B 61 761 151 HOH HOH . 
H 4 HOH B 62 762 8 HOH HOH . 
H 4 HOH B 63 763 97 HOH HOH . 
H 4 HOH B 64 764 157 HOH HOH . 
H 4 HOH B 65 765 138 HOH HOH . 
H 4 HOH B 66 766 104 HOH HOH . 
H 4 HOH B 67 767 108 HOH HOH . 
H 4 HOH B 68 768 139 HOH HOH . 
H 4 HOH B 69 769 150 HOH HOH . 
H 4 HOH B 70 770 143 HOH HOH . 
H 4 HOH B 71 771 142 HOH HOH . 
H 4 HOH B 72 772 55 HOH HOH . 
H 4 HOH B 73 773 106 HOH HOH . 
H 4 HOH B 74 774 131 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               40.326 
_atom_site.Cartn_y               -3.106 
_atom_site.Cartn_z               47.515 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.7 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           602 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              76 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#