data_8DWK # _model_server_result.job_id RqPoGOsbqU1T2AcTCfuW_A _model_server_result.datetime_utc '2024-11-04 22:51:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 8DWK # _exptl.entry_id 8DWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DWK _cell.length_a 91.373 _cell.length_b 91.373 _cell.length_c 196.396 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 63 A ASP 64 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A NE2 HIS 65 A HIS 66 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 A OD2 ASP 91 A ASP 92 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 A OD2 ASP 91 A ASP 92 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc5 A OD1 ASN 123 A ASN 124 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc6 A NE2 HIS 172 A HIS 173 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc7 A ND1 HIS 247 A HIS 248 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc8 E MN MN . A MN 401 1_555 I O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc9 E MN MN . A MN 401 1_555 I O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc10 F MN MN . A MN 402 1_555 I O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 B OD2 ASP 63 B ASP 64 1_555 H MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc12 B NE2 HIS 65 B HIS 66 1_555 H MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc13 B OD2 ASP 91 B ASP 92 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 B OD2 ASP 91 B ASP 92 1_555 H MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc15 B OD1 ASN 123 B ASN 124 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc16 B NE2 HIS 172 B HIS 173 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc17 B ND1 HIS 247 B HIS 248 1_555 G MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc18 G MN MN . B MN 401 1_555 J O HOH . B HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc19 H MN MN . B MN 402 1_555 J O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc20 H MN MN . B MN 402 1_555 J O HOH . B HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DWK _atom_sites.fract_transf_matrix[1][1] 0.010944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN A 1 401 3 MN MN . F 3 MN A 1 402 4 MN MN . G 3 MN B 1 401 1 MN MN . H 3 MN B 1 402 2 MN MN . I 4 HOH A 1 501 15 HOH HOH . I 4 HOH A 2 502 50 HOH HOH . I 4 HOH A 3 503 71 HOH HOH . I 4 HOH A 4 504 23 HOH HOH . I 4 HOH A 5 505 27 HOH HOH . I 4 HOH A 6 506 62 HOH HOH . I 4 HOH A 7 507 60 HOH HOH . I 4 HOH A 8 508 11 HOH HOH . I 4 HOH A 9 509 25 HOH HOH . I 4 HOH A 10 510 5 HOH HOH . I 4 HOH A 11 511 19 HOH HOH . I 4 HOH A 12 512 36 HOH HOH . I 4 HOH A 13 513 3 HOH HOH . I 4 HOH A 14 514 55 HOH HOH . I 4 HOH A 15 515 46 HOH HOH . I 4 HOH A 16 516 2 HOH HOH . I 4 HOH A 17 517 4 HOH HOH . I 4 HOH A 18 518 47 HOH HOH . I 4 HOH A 19 519 6 HOH HOH . I 4 HOH A 20 520 32 HOH HOH . I 4 HOH A 21 521 26 HOH HOH . I 4 HOH A 22 522 7 HOH HOH . I 4 HOH A 23 523 40 HOH HOH . I 4 HOH A 24 524 35 HOH HOH . I 4 HOH A 25 525 52 HOH HOH . I 4 HOH A 26 526 20 HOH HOH . I 4 HOH A 27 527 57 HOH HOH . I 4 HOH A 28 528 67 HOH HOH . I 4 HOH A 29 529 58 HOH HOH . I 4 HOH A 30 530 39 HOH HOH . I 4 HOH A 31 531 45 HOH HOH . I 4 HOH A 32 532 17 HOH HOH . I 4 HOH A 33 533 16 HOH HOH . J 4 HOH B 1 501 13 HOH HOH . J 4 HOH B 2 502 65 HOH HOH . J 4 HOH B 3 503 64 HOH HOH . J 4 HOH B 4 504 10 HOH HOH . J 4 HOH B 5 505 29 HOH HOH . J 4 HOH B 6 506 69 HOH HOH . J 4 HOH B 7 507 70 HOH HOH . J 4 HOH B 8 508 24 HOH HOH . J 4 HOH B 9 509 9 HOH HOH . J 4 HOH B 10 510 1 HOH HOH . J 4 HOH B 11 511 43 HOH HOH . J 4 HOH B 12 512 56 HOH HOH . J 4 HOH B 13 513 63 HOH HOH . J 4 HOH B 14 514 53 HOH HOH . J 4 HOH B 15 515 22 HOH HOH . J 4 HOH B 16 516 51 HOH HOH . J 4 HOH B 17 517 34 HOH HOH . J 4 HOH B 18 518 66 HOH HOH . J 4 HOH B 19 519 72 HOH HOH . K 4 HOH C 1 101 61 HOH HOH . L 4 HOH D 1 101 31 HOH HOH . L 4 HOH D 2 102 18 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -58.877 _atom_site.Cartn_y 3.685 _atom_site.Cartn_z 24.299 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #