data_8DX0 # _model_server_result.job_id j4wm1t8EW2fslY3-nYh-FA _model_server_result.datetime_utc '2025-07-30 15:46:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8DX0 # _exptl.entry_id 8DX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.64 _cell.angle_gamma 90 _cell.entry_id 8DX0 _cell.length_a 62.7 _cell.length_b 40.23 _cell.length_c 64.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 24 A GLU 231 1_555 C MG MG . A MG 401 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc2 A OE2 GLU 24 A GLU 231 1_555 C MG MG . A MG 401 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc3 A OE1 GLU 45 A GLU 252 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc4 A OE2 GLU 45 A GLU 252 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc5 C MG MG . A MG 401 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 C MG MG . A MG 401 1_555 F O HOH . A HOH 506 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc7 C MG MG . A MG 401 1_555 F O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc8 C MG MG . A MG 401 1_555 F O HOH . A HOH 576 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 C MG MG . A MG 401 1_555 F O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc10 B OE1 GLU 4 B GLU 211 1_555 E MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc11 B OE1 GLU 24 B GLU 231 1_555 D MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc12 B OE2 GLU 24 B GLU 231 1_555 D MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc13 B OD1 ASP 43 B ASP 250 1_555 E MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc14 B OE1 GLU 45 B GLU 252 1_555 D MG MG . B MG 401 2_646 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc15 D MG MG . B MG 401 1_555 G O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc16 D MG MG . B MG 401 1_555 G O HOH . B HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc17 D MG MG . B MG 401 1_555 G O HOH . B HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc18 D MG MG . B MG 401 1_555 G O HOH . B HOH 589 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc19 E MG MG . B MG 402 1_555 G O HOH . B HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc20 E MG MG . B MG 402 1_555 G O HOH . B HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc21 E MG MG . B MG 402 1_555 G O HOH . B HOH 562 2_646 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8DX0 _atom_sites.fract_transf_matrix[1][1] 0.015949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000457 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 1 MG MG . D 2 MG B 1 401 2 MG MG . E 2 MG B 1 402 3 MG MG . F 3 HOH A 1 501 210 HOH HOH . F 3 HOH A 2 502 166 HOH HOH . F 3 HOH A 3 503 179 HOH HOH . F 3 HOH A 4 504 214 HOH HOH . F 3 HOH A 5 505 17 HOH HOH . F 3 HOH A 6 506 78 HOH HOH . F 3 HOH A 7 507 187 HOH HOH . F 3 HOH A 8 508 138 HOH HOH . F 3 HOH A 9 509 154 HOH HOH . F 3 HOH A 10 510 112 HOH HOH . F 3 HOH A 11 511 178 HOH HOH . F 3 HOH A 12 512 176 HOH HOH . F 3 HOH A 13 513 158 HOH HOH . F 3 HOH A 14 514 76 HOH HOH . F 3 HOH A 15 515 113 HOH HOH . F 3 HOH A 16 516 119 HOH HOH . F 3 HOH A 17 517 6 HOH HOH . F 3 HOH A 18 518 224 HOH HOH . F 3 HOH A 19 519 193 HOH HOH . F 3 HOH A 20 520 31 HOH HOH . F 3 HOH A 21 521 9 HOH HOH . F 3 HOH A 22 522 190 HOH HOH . F 3 HOH A 23 523 20 HOH HOH . F 3 HOH A 24 524 3 HOH HOH . F 3 HOH A 25 525 91 HOH HOH . F 3 HOH A 26 526 144 HOH HOH . F 3 HOH A 27 527 225 HOH HOH . F 3 HOH A 28 528 26 HOH HOH . F 3 HOH A 29 529 217 HOH HOH . F 3 HOH A 30 530 2 HOH HOH . F 3 HOH A 31 531 95 HOH HOH . F 3 HOH A 32 532 32 HOH HOH . F 3 HOH A 33 533 181 HOH HOH . F 3 HOH A 34 534 37 HOH HOH . F 3 HOH A 35 535 54 HOH HOH . F 3 HOH A 36 536 70 HOH HOH . F 3 HOH A 37 537 58 HOH HOH . F 3 HOH A 38 538 131 HOH HOH . F 3 HOH A 39 539 108 HOH HOH . F 3 HOH A 40 540 86 HOH HOH . F 3 HOH A 41 541 24 HOH HOH . F 3 HOH A 42 542 101 HOH HOH . F 3 HOH A 43 543 104 HOH HOH . F 3 HOH A 44 544 35 HOH HOH . F 3 HOH A 45 545 45 HOH HOH . F 3 HOH A 46 546 141 HOH HOH . F 3 HOH A 47 547 94 HOH HOH . F 3 HOH A 48 548 1 HOH HOH . F 3 HOH A 49 549 223 HOH HOH . F 3 HOH A 50 550 130 HOH HOH . F 3 HOH A 51 551 139 HOH HOH . F 3 HOH A 52 552 90 HOH HOH . F 3 HOH A 53 553 221 HOH HOH . F 3 HOH A 54 554 102 HOH HOH . F 3 HOH A 55 555 170 HOH HOH . F 3 HOH A 56 556 27 HOH HOH . F 3 HOH A 57 557 22 HOH HOH . F 3 HOH A 58 558 160 HOH HOH . F 3 HOH A 59 559 43 HOH HOH . F 3 HOH A 60 560 11 HOH HOH . F 3 HOH A 61 561 10 HOH HOH . F 3 HOH A 62 562 40 HOH HOH . F 3 HOH A 63 563 19 HOH HOH . F 3 HOH A 64 564 206 HOH HOH . F 3 HOH A 65 565 163 HOH HOH . F 3 HOH A 66 566 13 HOH HOH . F 3 HOH A 67 567 23 HOH HOH . F 3 HOH A 68 568 209 HOH HOH . F 3 HOH A 69 569 75 HOH HOH . F 3 HOH A 70 570 7 HOH HOH . F 3 HOH A 71 571 4 HOH HOH . F 3 HOH A 72 572 83 HOH HOH . F 3 HOH A 73 573 60 HOH HOH . F 3 HOH A 74 574 145 HOH HOH . F 3 HOH A 75 575 44 HOH HOH . F 3 HOH A 76 576 118 HOH HOH . F 3 HOH A 77 577 111 HOH HOH . F 3 HOH A 78 578 69 HOH HOH . F 3 HOH A 79 579 97 HOH HOH . F 3 HOH A 80 580 8 HOH HOH . F 3 HOH A 81 581 150 HOH HOH . F 3 HOH A 82 582 215 HOH HOH . F 3 HOH A 83 583 137 HOH HOH . F 3 HOH A 84 584 42 HOH HOH . F 3 HOH A 85 585 47 HOH HOH . F 3 HOH A 86 586 204 HOH HOH . F 3 HOH A 87 587 194 HOH HOH . F 3 HOH A 88 588 191 HOH HOH . F 3 HOH A 89 589 184 HOH HOH . F 3 HOH A 90 590 87 HOH HOH . F 3 HOH A 91 591 81 HOH HOH . F 3 HOH A 92 592 157 HOH HOH . F 3 HOH A 93 593 226 HOH HOH . F 3 HOH A 94 594 110 HOH HOH . F 3 HOH A 95 595 99 HOH HOH . F 3 HOH A 96 596 14 HOH HOH . F 3 HOH A 97 597 38 HOH HOH . F 3 HOH A 98 598 16 HOH HOH . F 3 HOH A 99 599 33 HOH HOH . F 3 HOH A 100 600 57 HOH HOH . F 3 HOH A 101 601 64 HOH HOH . F 3 HOH A 102 602 98 HOH HOH . F 3 HOH A 103 603 228 HOH HOH . F 3 HOH A 104 604 205 HOH HOH . F 3 HOH A 105 605 161 HOH HOH . F 3 HOH A 106 606 12 HOH HOH . F 3 HOH A 107 607 196 HOH HOH . F 3 HOH A 108 608 174 HOH HOH . F 3 HOH A 109 609 202 HOH HOH . F 3 HOH A 110 610 72 HOH HOH . F 3 HOH A 111 611 106 HOH HOH . F 3 HOH A 112 612 222 HOH HOH . F 3 HOH A 113 613 30 HOH HOH . F 3 HOH A 114 614 227 HOH HOH . F 3 HOH A 115 615 103 HOH HOH . F 3 HOH A 116 616 167 HOH HOH . F 3 HOH A 117 617 189 HOH HOH . F 3 HOH A 118 618 165 HOH HOH . F 3 HOH A 119 619 71 HOH HOH . F 3 HOH A 120 620 124 HOH HOH . F 3 HOH A 121 621 192 HOH HOH . F 3 HOH A 122 622 199 HOH HOH . F 3 HOH A 123 623 93 HOH HOH . G 3 HOH B 1 501 121 HOH HOH . G 3 HOH B 2 502 84 HOH HOH . G 3 HOH B 3 503 136 HOH HOH . G 3 HOH B 4 504 21 HOH HOH . G 3 HOH B 5 505 122 HOH HOH . G 3 HOH B 6 506 151 HOH HOH . G 3 HOH B 7 507 159 HOH HOH . G 3 HOH B 8 508 140 HOH HOH . G 3 HOH B 9 509 188 HOH HOH . G 3 HOH B 10 510 152 HOH HOH . G 3 HOH B 11 511 34 HOH HOH . G 3 HOH B 12 512 62 HOH HOH . G 3 HOH B 13 513 149 HOH HOH . G 3 HOH B 14 514 89 HOH HOH . G 3 HOH B 15 515 73 HOH HOH . G 3 HOH B 16 516 212 HOH HOH . G 3 HOH B 17 517 82 HOH HOH . G 3 HOH B 18 518 195 HOH HOH . G 3 HOH B 19 519 114 HOH HOH . G 3 HOH B 20 520 55 HOH HOH . G 3 HOH B 21 521 85 HOH HOH . G 3 HOH B 22 522 143 HOH HOH . G 3 HOH B 23 523 15 HOH HOH . G 3 HOH B 24 524 61 HOH HOH . G 3 HOH B 25 525 5 HOH HOH . G 3 HOH B 26 526 147 HOH HOH . G 3 HOH B 27 527 50 HOH HOH . G 3 HOH B 28 528 200 HOH HOH . G 3 HOH B 29 529 36 HOH HOH . G 3 HOH B 30 530 51 HOH HOH . G 3 HOH B 31 531 116 HOH HOH . G 3 HOH B 32 532 105 HOH HOH . G 3 HOH B 33 533 218 HOH HOH . G 3 HOH B 34 534 134 HOH HOH . G 3 HOH B 35 535 115 HOH HOH . G 3 HOH B 36 536 172 HOH HOH . G 3 HOH B 37 537 49 HOH HOH . G 3 HOH B 38 538 132 HOH HOH . G 3 HOH B 39 539 46 HOH HOH . G 3 HOH B 40 540 68 HOH HOH . G 3 HOH B 41 541 148 HOH HOH . G 3 HOH B 42 542 177 HOH HOH . G 3 HOH B 43 543 56 HOH HOH . G 3 HOH B 44 544 220 HOH HOH . G 3 HOH B 45 545 25 HOH HOH . G 3 HOH B 46 546 80 HOH HOH . G 3 HOH B 47 547 29 HOH HOH . G 3 HOH B 48 548 53 HOH HOH . G 3 HOH B 49 549 28 HOH HOH . G 3 HOH B 50 550 126 HOH HOH . G 3 HOH B 51 551 168 HOH HOH . G 3 HOH B 52 552 59 HOH HOH . G 3 HOH B 53 553 182 HOH HOH . G 3 HOH B 54 554 175 HOH HOH . G 3 HOH B 55 555 79 HOH HOH . G 3 HOH B 56 556 88 HOH HOH . G 3 HOH B 57 557 120 HOH HOH . G 3 HOH B 58 558 156 HOH HOH . G 3 HOH B 59 559 117 HOH HOH . G 3 HOH B 60 560 142 HOH HOH . G 3 HOH B 61 561 77 HOH HOH . G 3 HOH B 62 562 219 HOH HOH . G 3 HOH B 63 563 135 HOH HOH . G 3 HOH B 64 564 67 HOH HOH . G 3 HOH B 65 565 65 HOH HOH . G 3 HOH B 66 566 48 HOH HOH . G 3 HOH B 67 567 207 HOH HOH . G 3 HOH B 68 568 39 HOH HOH . G 3 HOH B 69 569 109 HOH HOH . G 3 HOH B 70 570 183 HOH HOH . G 3 HOH B 71 571 107 HOH HOH . G 3 HOH B 72 572 164 HOH HOH . G 3 HOH B 73 573 63 HOH HOH . G 3 HOH B 74 574 186 HOH HOH . G 3 HOH B 75 575 153 HOH HOH . G 3 HOH B 76 576 74 HOH HOH . G 3 HOH B 77 577 41 HOH HOH . G 3 HOH B 78 578 52 HOH HOH . G 3 HOH B 79 579 146 HOH HOH . G 3 HOH B 80 580 185 HOH HOH . G 3 HOH B 81 581 203 HOH HOH . G 3 HOH B 82 582 92 HOH HOH . G 3 HOH B 83 583 198 HOH HOH . G 3 HOH B 84 584 100 HOH HOH . G 3 HOH B 85 585 96 HOH HOH . G 3 HOH B 86 586 133 HOH HOH . G 3 HOH B 87 587 201 HOH HOH . G 3 HOH B 88 588 162 HOH HOH . G 3 HOH B 89 589 213 HOH HOH . G 3 HOH B 90 590 180 HOH HOH . G 3 HOH B 91 591 123 HOH HOH . G 3 HOH B 92 592 169 HOH HOH . G 3 HOH B 93 593 155 HOH HOH . G 3 HOH B 94 594 18 HOH HOH . G 3 HOH B 95 595 127 HOH HOH . G 3 HOH B 96 596 171 HOH HOH . G 3 HOH B 97 597 125 HOH HOH . G 3 HOH B 98 598 66 HOH HOH . G 3 HOH B 99 599 216 HOH HOH . G 3 HOH B 100 600 128 HOH HOH . G 3 HOH B 101 601 173 HOH HOH . G 3 HOH B 102 602 208 HOH HOH . G 3 HOH B 103 603 129 HOH HOH . G 3 HOH B 104 604 197 HOH HOH . G 3 HOH B 105 605 211 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 36.54 _atom_site.Cartn_y 35.291 _atom_site.Cartn_z 22.146 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #