data_8DXB
#
_model_server_result.job_id            -EhBvzDvf7D-vhQg_CW6aA 
_model_server_result.datetime_utc      '2024-11-24 13:53:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dxb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":504}' 
#
_entry.id    8DXB 
#
_exptl.entry_id    8DXB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.623 
_cell.angle_gamma         90 
_cell.entry_id            8DXB 
_cell.length_a            162.618 
_cell.length_b            73.128 
_cell.length_c            109.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DXB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 445 A ASP 443 1_555 L MG MG . A MG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? 
metalc ? metalc2 A OD1 ASP 551 A ASP 549 1_555 L MG MG . A MG 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8DXB 
_atom_sites.fract_transf_matrix[1][1]    0.006149 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001153 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009314 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FIC A 1 901 901 FIC H20 . 
D 3 FIC A 1 902 1001 FIC H20 . 
E 4 T27 A 1 903 1 T27 278 . 
F 5 DMS A 1 904 1 DMS DMS . 
G 5 DMS A 1 905 3 DMS DMS . 
H 5 DMS A 1 906 11 DMS DMS . 
I 5 DMS A 1 907 14 DMS DMS . 
J 6 EDO A 1 908 4 EDO EDO . 
K 6 EDO A 1 909 5 EDO EDO . 
L 7 MG A 1 910 1 MG MG . 
M 5 DMS B 1 501 12 DMS DMS . 
N 5 DMS B 1 502 4 DMS DMS . 
O 5 DMS B 1 503 9 DMS DMS . 
P 5 DMS B 1 504 10 DMS DMS . 
Q 5 DMS B 1 505 13 DMS DMS . 
R 6 EDO B 1 506 3 EDO EDO . 
S 8 HOH A 1 1001 74 HOH HOH . 
S 8 HOH A 2 1002 70 HOH HOH . 
S 8 HOH A 3 1003 72 HOH HOH . 
S 8 HOH A 4 1004 136 HOH HOH . 
S 8 HOH A 5 1005 25 HOH HOH . 
S 8 HOH A 6 1006 113 HOH HOH . 
S 8 HOH A 7 1007 143 HOH HOH . 
S 8 HOH A 8 1008 24 HOH HOH . 
S 8 HOH A 9 1009 101 HOH HOH . 
S 8 HOH A 10 1010 11 HOH HOH . 
S 8 HOH A 11 1011 75 HOH HOH . 
S 8 HOH A 12 1012 98 HOH HOH . 
S 8 HOH A 13 1013 112 HOH HOH . 
S 8 HOH A 14 1014 125 HOH HOH . 
S 8 HOH A 15 1015 71 HOH HOH . 
S 8 HOH A 16 1016 88 HOH HOH . 
S 8 HOH A 17 1017 84 HOH HOH . 
S 8 HOH A 18 1018 62 HOH HOH . 
S 8 HOH A 19 1019 26 HOH HOH . 
S 8 HOH A 20 1020 54 HOH HOH . 
S 8 HOH A 21 1021 50 HOH HOH . 
S 8 HOH A 22 1022 79 HOH HOH . 
S 8 HOH A 23 1023 108 HOH HOH . 
S 8 HOH A 24 1024 31 HOH HOH . 
S 8 HOH A 25 1025 52 HOH HOH . 
S 8 HOH A 26 1026 73 HOH HOH . 
S 8 HOH A 27 1027 138 HOH HOH . 
S 8 HOH A 28 1028 99 HOH HOH . 
S 8 HOH A 29 1029 6 HOH HOH . 
S 8 HOH A 30 1030 35 HOH HOH . 
S 8 HOH A 31 1031 9 HOH HOH . 
S 8 HOH A 32 1032 49 HOH HOH . 
S 8 HOH A 33 1033 20 HOH HOH . 
S 8 HOH A 34 1034 114 HOH HOH . 
S 8 HOH A 35 1035 96 HOH HOH . 
S 8 HOH A 36 1036 100 HOH HOH . 
S 8 HOH A 37 1037 179 HOH HOH . 
S 8 HOH A 38 1038 36 HOH HOH . 
S 8 HOH A 39 1039 12 HOH HOH . 
S 8 HOH A 40 1040 16 HOH HOH . 
S 8 HOH A 41 1041 121 HOH HOH . 
S 8 HOH A 42 1042 60 HOH HOH . 
S 8 HOH A 43 1043 89 HOH HOH . 
S 8 HOH A 44 1044 148 HOH HOH . 
S 8 HOH A 45 1045 46 HOH HOH . 
S 8 HOH A 46 1046 166 HOH HOH . 
S 8 HOH A 47 1047 102 HOH HOH . 
S 8 HOH A 48 1048 159 HOH HOH . 
S 8 HOH A 49 1049 44 HOH HOH . 
S 8 HOH A 50 1050 55 HOH HOH . 
S 8 HOH A 51 1051 111 HOH HOH . 
S 8 HOH A 52 1052 42 HOH HOH . 
S 8 HOH A 53 1053 4 HOH HOH . 
S 8 HOH A 54 1054 3 HOH HOH . 
S 8 HOH A 55 1055 163 HOH HOH . 
S 8 HOH A 56 1056 93 HOH HOH . 
S 8 HOH A 57 1057 2 HOH HOH . 
S 8 HOH A 58 1058 152 HOH HOH . 
S 8 HOH A 59 1059 83 HOH HOH . 
S 8 HOH A 60 1060 56 HOH HOH . 
S 8 HOH A 61 1061 76 HOH HOH . 
S 8 HOH A 62 1062 157 HOH HOH . 
S 8 HOH A 63 1063 135 HOH HOH . 
S 8 HOH A 64 1064 17 HOH HOH . 
S 8 HOH A 65 1065 53 HOH HOH . 
S 8 HOH A 66 1066 45 HOH HOH . 
S 8 HOH A 67 1067 165 HOH HOH . 
S 8 HOH A 68 1068 149 HOH HOH . 
S 8 HOH A 69 1069 34 HOH HOH . 
S 8 HOH A 70 1070 14 HOH HOH . 
S 8 HOH A 71 1071 81 HOH HOH . 
S 8 HOH A 72 1072 171 HOH HOH . 
S 8 HOH A 73 1073 57 HOH HOH . 
S 8 HOH A 74 1074 27 HOH HOH . 
S 8 HOH A 75 1075 139 HOH HOH . 
S 8 HOH A 76 1076 7 HOH HOH . 
S 8 HOH A 77 1077 160 HOH HOH . 
S 8 HOH A 78 1078 145 HOH HOH . 
S 8 HOH A 79 1079 188 HOH HOH . 
S 8 HOH A 80 1080 174 HOH HOH . 
S 8 HOH A 81 1081 29 HOH HOH . 
S 8 HOH A 82 1082 168 HOH HOH . 
S 8 HOH A 83 1083 176 HOH HOH . 
S 8 HOH A 84 1084 64 HOH HOH . 
S 8 HOH A 85 1085 187 HOH HOH . 
S 8 HOH A 86 1086 105 HOH HOH . 
S 8 HOH A 87 1087 126 HOH HOH . 
S 8 HOH A 88 1088 61 HOH HOH . 
S 8 HOH A 89 1089 132 HOH HOH . 
S 8 HOH A 90 1090 124 HOH HOH . 
S 8 HOH A 91 1091 186 HOH HOH . 
S 8 HOH A 92 1092 8 HOH HOH . 
S 8 HOH A 93 1093 122 HOH HOH . 
S 8 HOH A 94 1094 117 HOH HOH . 
S 8 HOH A 95 1095 134 HOH HOH . 
S 8 HOH A 96 1096 10 HOH HOH . 
S 8 HOH A 97 1097 120 HOH HOH . 
S 8 HOH A 98 1098 33 HOH HOH . 
S 8 HOH A 99 1099 38 HOH HOH . 
S 8 HOH A 100 1100 177 HOH HOH . 
S 8 HOH A 101 1101 153 HOH HOH . 
S 8 HOH A 102 1102 164 HOH HOH . 
S 8 HOH A 103 1103 97 HOH HOH . 
S 8 HOH A 104 1104 87 HOH HOH . 
S 8 HOH A 105 1105 68 HOH HOH . 
S 8 HOH A 106 1106 91 HOH HOH . 
S 8 HOH A 107 1107 39 HOH HOH . 
S 8 HOH A 108 1108 178 HOH HOH . 
S 8 HOH A 109 1109 146 HOH HOH . 
S 8 HOH A 110 1110 185 HOH HOH . 
S 8 HOH A 111 1111 128 HOH HOH . 
S 8 HOH A 112 1112 192 HOH HOH . 
S 8 HOH A 113 1113 191 HOH HOH . 
S 8 HOH A 114 1114 141 HOH HOH . 
S 8 HOH A 115 1115 66 HOH HOH . 
S 8 HOH A 116 1116 129 HOH HOH . 
S 8 HOH A 117 1117 158 HOH HOH . 
S 8 HOH A 118 1118 189 HOH HOH . 
S 8 HOH A 119 1119 162 HOH HOH . 
S 8 HOH A 120 1120 156 HOH HOH . 
S 8 HOH A 121 1121 151 HOH HOH . 
S 8 HOH A 122 1122 172 HOH HOH . 
S 8 HOH A 123 1123 109 HOH HOH . 
S 8 HOH A 124 1124 104 HOH HOH . 
S 8 HOH A 125 1125 23 HOH HOH . 
S 8 HOH A 126 1126 59 HOH HOH . 
S 8 HOH A 127 1127 154 HOH HOH . 
S 8 HOH A 128 1128 190 HOH HOH . 
S 8 HOH A 129 1129 115 HOH HOH . 
S 8 HOH A 130 1130 82 HOH HOH . 
S 8 HOH A 131 1131 92 HOH HOH . 
T 8 HOH B 1 601 106 HOH HOH . 
T 8 HOH B 2 602 183 HOH HOH . 
T 8 HOH B 3 603 144 HOH HOH . 
T 8 HOH B 4 604 173 HOH HOH . 
T 8 HOH B 5 605 119 HOH HOH . 
T 8 HOH B 6 606 90 HOH HOH . 
T 8 HOH B 7 607 28 HOH HOH . 
T 8 HOH B 8 608 118 HOH HOH . 
T 8 HOH B 9 609 48 HOH HOH . 
T 8 HOH B 10 610 21 HOH HOH . 
T 8 HOH B 11 611 170 HOH HOH . 
T 8 HOH B 12 612 123 HOH HOH . 
T 8 HOH B 13 613 43 HOH HOH . 
T 8 HOH B 14 614 107 HOH HOH . 
T 8 HOH B 15 615 95 HOH HOH . 
T 8 HOH B 16 616 37 HOH HOH . 
T 8 HOH B 17 617 15 HOH HOH . 
T 8 HOH B 18 618 32 HOH HOH . 
T 8 HOH B 19 619 18 HOH HOH . 
T 8 HOH B 20 620 5 HOH HOH . 
T 8 HOH B 21 621 22 HOH HOH . 
T 8 HOH B 22 622 80 HOH HOH . 
T 8 HOH B 23 623 133 HOH HOH . 
T 8 HOH B 24 624 169 HOH HOH . 
T 8 HOH B 25 625 127 HOH HOH . 
T 8 HOH B 26 626 150 HOH HOH . 
T 8 HOH B 27 627 181 HOH HOH . 
T 8 HOH B 28 628 86 HOH HOH . 
T 8 HOH B 29 629 13 HOH HOH . 
T 8 HOH B 30 630 142 HOH HOH . 
T 8 HOH B 31 631 94 HOH HOH . 
T 8 HOH B 32 632 167 HOH HOH . 
T 8 HOH B 33 633 41 HOH HOH . 
T 8 HOH B 34 634 63 HOH HOH . 
T 8 HOH B 35 635 77 HOH HOH . 
T 8 HOH B 36 636 67 HOH HOH . 
T 8 HOH B 37 637 184 HOH HOH . 
T 8 HOH B 38 638 40 HOH HOH . 
T 8 HOH B 39 639 30 HOH HOH . 
T 8 HOH B 40 640 180 HOH HOH . 
T 8 HOH B 41 641 58 HOH HOH . 
T 8 HOH B 42 642 51 HOH HOH . 
T 8 HOH B 43 643 175 HOH HOH . 
T 8 HOH B 44 644 116 HOH HOH . 
T 8 HOH B 45 645 1 HOH HOH . 
T 8 HOH B 46 646 69 HOH HOH . 
T 8 HOH B 47 647 65 HOH HOH . 
T 8 HOH B 48 648 85 HOH HOH . 
T 8 HOH B 49 649 19 HOH HOH . 
T 8 HOH B 50 650 182 HOH HOH . 
T 8 HOH B 51 651 140 HOH HOH . 
T 8 HOH B 52 652 78 HOH HOH . 
T 8 HOH B 53 653 130 HOH HOH . 
T 8 HOH B 54 654 161 HOH HOH . 
T 8 HOH B 55 655 131 HOH HOH . 
T 8 HOH B 56 656 103 HOH HOH . 
T 8 HOH B 57 657 110 HOH HOH . 
T 8 HOH B 58 658 137 HOH HOH . 
T 8 HOH B 59 659 155 HOH HOH . 
T 8 HOH B 60 660 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . P 5 24.484 21.359 14.334 1 109.18 ? S DMS 504 B 1 
HETATM 2 O O DMS . . . P 5 24.966 20.181 13.076 1 71.6 ? O DMS 504 B 1 
HETATM 3 C C1 DMS . . . P 5 25.903 21.594 15.434 1 79.2 ? C1 DMS 504 B 1 
HETATM 4 C C2 DMS . . . P 5 24.351 22.991 13.558 1 67.68 ? C2 DMS 504 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           47 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           1166 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#