data_8DY1
#
_model_server_result.job_id            aKfECuQJ7agtEFrhfAB5oQ 
_model_server_result.datetime_utc      '2024-12-26 16:42:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    8DY1 
#
_exptl.entry_id    8DY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.69 
_cell.angle_gamma         90 
_cell.entry_id            8DY1 
_cell.length_a            51.93 
_cell.length_b            62.05 
_cell.length_c            111.71 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,K 1 1 
B,D,G,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 61 A CYS 71 1_555 A SG CYS 111 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 A SG CYS 66 A CYS 76 1_555 A SG CYS 113 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 61 B CYS 71 1_555 B SG CYS 111 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 66 B CYS 76 1_555 B SG CYS 113 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 91 C CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 C SG CYS 152 C CYS 152 1_555 C SG CYS 226 C CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 22 D CYS 22 1_555 D SG CYS 91 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 D SG CYS 152 D CYS 152 1_555 D SG CYS 226 D CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 290 n n 
S O2 SO4 doub 291 n n 
S O3 SO4 sing 292 n n 
S O4 SO4 sing 293 n n 
#
_atom_sites.entry_id                     8DY1 
_atom_sites.fract_transf_matrix[1][1]    0.019257 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003288 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 C 1 301 1 SO4 SO4 . 
F 3 SO4 C 1 302 2 SO4 SO4 . 
G 3 SO4 D 1 301 3 SO4 SO4 . 
H 3 SO4 D 1 302 4 SO4 SO4 . 
I 4 HOH A 1 201 51 HOH HOH . 
I 4 HOH A 2 202 44 HOH HOH . 
I 4 HOH A 3 203 9 HOH HOH . 
I 4 HOH A 4 204 63 HOH HOH . 
I 4 HOH A 5 205 17 HOH HOH . 
I 4 HOH A 6 206 73 HOH HOH . 
I 4 HOH A 7 207 61 HOH HOH . 
I 4 HOH A 8 208 49 HOH HOH . 
I 4 HOH A 9 209 55 HOH HOH . 
J 4 HOH B 1 201 12 HOH HOH . 
J 4 HOH B 2 202 22 HOH HOH . 
J 4 HOH B 3 203 52 HOH HOH . 
J 4 HOH B 4 204 68 HOH HOH . 
J 4 HOH B 5 205 48 HOH HOH . 
J 4 HOH B 6 206 30 HOH HOH . 
J 4 HOH B 7 207 56 HOH HOH . 
J 4 HOH B 8 208 19 HOH HOH . 
J 4 HOH B 9 209 32 HOH HOH . 
J 4 HOH B 10 210 31 HOH HOH . 
J 4 HOH B 11 211 13 HOH HOH . 
J 4 HOH B 12 212 60 HOH HOH . 
J 4 HOH B 13 213 20 HOH HOH . 
J 4 HOH B 14 214 58 HOH HOH . 
J 4 HOH B 15 215 71 HOH HOH . 
K 4 HOH C 1 401 38 HOH HOH . 
K 4 HOH C 2 402 39 HOH HOH . 
K 4 HOH C 3 403 66 HOH HOH . 
K 4 HOH C 4 404 42 HOH HOH . 
K 4 HOH C 5 405 33 HOH HOH . 
K 4 HOH C 6 406 54 HOH HOH . 
K 4 HOH C 7 407 3 HOH HOH . 
K 4 HOH C 8 408 65 HOH HOH . 
K 4 HOH C 9 409 47 HOH HOH . 
K 4 HOH C 10 410 18 HOH HOH . 
K 4 HOH C 11 411 5 HOH HOH . 
K 4 HOH C 12 412 8 HOH HOH . 
K 4 HOH C 13 413 40 HOH HOH . 
K 4 HOH C 14 414 27 HOH HOH . 
K 4 HOH C 15 415 23 HOH HOH . 
K 4 HOH C 16 416 15 HOH HOH . 
K 4 HOH C 17 417 41 HOH HOH . 
K 4 HOH C 18 418 46 HOH HOH . 
K 4 HOH C 19 419 43 HOH HOH . 
K 4 HOH C 20 420 45 HOH HOH . 
K 4 HOH C 21 421 11 HOH HOH . 
K 4 HOH C 22 422 6 HOH HOH . 
K 4 HOH C 23 423 28 HOH HOH . 
K 4 HOH C 24 424 37 HOH HOH . 
K 4 HOH C 25 425 29 HOH HOH . 
K 4 HOH C 26 426 70 HOH HOH . 
K 4 HOH C 27 427 59 HOH HOH . 
K 4 HOH C 28 428 67 HOH HOH . 
K 4 HOH C 29 429 36 HOH HOH . 
L 4 HOH D 1 401 26 HOH HOH . 
L 4 HOH D 2 402 72 HOH HOH . 
L 4 HOH D 3 403 69 HOH HOH . 
L 4 HOH D 4 404 24 HOH HOH . 
L 4 HOH D 5 405 16 HOH HOH . 
L 4 HOH D 6 406 25 HOH HOH . 
L 4 HOH D 7 407 1 HOH HOH . 
L 4 HOH D 8 408 4 HOH HOH . 
L 4 HOH D 9 409 57 HOH HOH . 
L 4 HOH D 10 410 10 HOH HOH . 
L 4 HOH D 11 411 50 HOH HOH . 
L 4 HOH D 12 412 14 HOH HOH . 
L 4 HOH D 13 413 2 HOH HOH . 
L 4 HOH D 14 414 35 HOH HOH . 
L 4 HOH D 15 415 7 HOH HOH . 
L 4 HOH D 16 416 64 HOH HOH . 
L 4 HOH D 17 417 62 HOH HOH . 
L 4 HOH D 18 418 34 HOH HOH . 
L 4 HOH D 19 419 21 HOH HOH . 
L 4 HOH D 20 420 53 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . H 3 -46.866 -30.998 -14.815 1 60.66 ? S SO4 302 D 1 
HETATM 2 O O1 SO4 . . . H 3 -46.166 -31.785 -15.828 1 64.13 ? O1 SO4 302 D 1 
HETATM 3 O O2 SO4 . . . H 3 -47.909 -30.199 -15.451 1 66.05 ? O2 SO4 302 D 1 
HETATM 4 O O3 SO4 . . . H 3 -47.471 -31.896 -13.835 1 60.34 ? O3 SO4 302 D 1 
HETATM 5 O O4 SO4 . . . H 3 -45.918 -30.111 -14.149 1 48.95 ? O4 SO4 302 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           445 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#