data_8DYB # _model_server_result.job_id Y69jV1jz7x62CguAxrb1Jg _model_server_result.datetime_utc '2025-01-25 11:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8DYB # _exptl.entry_id 8DYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.213 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-methylsulfanylbenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.36 _cell.angle_gamma 90 _cell.entry_id 8DYB _cell.length_a 38.914 _cell.length_b 50.935 _cell.length_c 78.707 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 342 A CYS 358 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 D O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'C8 H8 O2 S' _chem_comp.formula_weight 168.213 _chem_comp.id 4MI _chem_comp.mon_nstd_flag . _chem_comp.name '4-methylsulfanylbenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C09 4MI doub 1 n n C09 O10 4MI sing 2 n n C09 C06 4MI sing 3 n n C05 C04 4MI doub 4 n y C05 C06 4MI sing 5 n y C04 C03 4MI sing 6 n y C06 C07 4MI doub 7 n y C03 C08 4MI doub 8 n y C03 S02 4MI sing 9 n n C07 C08 4MI sing 10 n y C01 S02 4MI sing 11 n n C01 H1 4MI sing 12 n n C01 H2 4MI sing 13 n n C01 H3 4MI sing 14 n n C04 H4 4MI sing 15 n n C05 H5 4MI sing 16 n n C07 H6 4MI sing 17 n n C08 H7 4MI sing 18 n n O10 H8 4MI sing 19 n n # _atom_sites.entry_id 8DYB _atom_sites.fract_transf_matrix[1][1] 0.025698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001957 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 4MI A 1 502 1 4MI LIG . D 4 HOH A 1 601 93 HOH HOH . D 4 HOH A 2 602 102 HOH HOH . D 4 HOH A 3 603 160 HOH HOH . D 4 HOH A 4 604 144 HOH HOH . D 4 HOH A 5 605 125 HOH HOH . D 4 HOH A 6 606 148 HOH HOH . D 4 HOH A 7 607 149 HOH HOH . D 4 HOH A 8 608 15 HOH HOH . D 4 HOH A 9 609 83 HOH HOH . D 4 HOH A 10 610 141 HOH HOH . D 4 HOH A 11 611 78 HOH HOH . D 4 HOH A 12 612 159 HOH HOH . D 4 HOH A 13 613 7 HOH HOH . D 4 HOH A 14 614 77 HOH HOH . D 4 HOH A 15 615 136 HOH HOH . D 4 HOH A 16 616 135 HOH HOH . D 4 HOH A 17 617 151 HOH HOH . D 4 HOH A 18 618 113 HOH HOH . D 4 HOH A 19 619 108 HOH HOH . D 4 HOH A 20 620 131 HOH HOH . D 4 HOH A 21 621 20 HOH HOH . D 4 HOH A 22 622 62 HOH HOH . D 4 HOH A 23 623 45 HOH HOH . D 4 HOH A 24 624 119 HOH HOH . D 4 HOH A 25 625 128 HOH HOH . D 4 HOH A 26 626 124 HOH HOH . D 4 HOH A 27 627 58 HOH HOH . D 4 HOH A 28 628 22 HOH HOH . D 4 HOH A 29 629 21 HOH HOH . D 4 HOH A 30 630 147 HOH HOH . D 4 HOH A 31 631 69 HOH HOH . D 4 HOH A 32 632 50 HOH HOH . D 4 HOH A 33 633 106 HOH HOH . D 4 HOH A 34 634 36 HOH HOH . D 4 HOH A 35 635 25 HOH HOH . D 4 HOH A 36 636 57 HOH HOH . D 4 HOH A 37 637 139 HOH HOH . D 4 HOH A 38 638 60 HOH HOH . D 4 HOH A 39 639 42 HOH HOH . D 4 HOH A 40 640 55 HOH HOH . D 4 HOH A 41 641 6 HOH HOH . D 4 HOH A 42 642 35 HOH HOH . D 4 HOH A 43 643 98 HOH HOH . D 4 HOH A 44 644 1 HOH HOH . D 4 HOH A 45 645 38 HOH HOH . D 4 HOH A 46 646 145 HOH HOH . D 4 HOH A 47 647 37 HOH HOH . D 4 HOH A 48 648 46 HOH HOH . D 4 HOH A 49 649 63 HOH HOH . D 4 HOH A 50 650 76 HOH HOH . D 4 HOH A 51 651 92 HOH HOH . D 4 HOH A 52 652 19 HOH HOH . D 4 HOH A 53 653 9 HOH HOH . D 4 HOH A 54 654 14 HOH HOH . D 4 HOH A 55 655 123 HOH HOH . D 4 HOH A 56 656 81 HOH HOH . D 4 HOH A 57 657 143 HOH HOH . D 4 HOH A 58 658 24 HOH HOH . D 4 HOH A 59 659 29 HOH HOH . D 4 HOH A 60 660 105 HOH HOH . D 4 HOH A 61 661 61 HOH HOH . D 4 HOH A 62 662 3 HOH HOH . D 4 HOH A 63 663 140 HOH HOH . D 4 HOH A 64 664 110 HOH HOH . D 4 HOH A 65 665 157 HOH HOH . D 4 HOH A 66 666 74 HOH HOH . D 4 HOH A 67 667 67 HOH HOH . D 4 HOH A 68 668 70 HOH HOH . D 4 HOH A 69 669 86 HOH HOH . D 4 HOH A 70 670 75 HOH HOH . D 4 HOH A 71 671 44 HOH HOH . D 4 HOH A 72 672 94 HOH HOH . D 4 HOH A 73 673 26 HOH HOH . D 4 HOH A 74 674 13 HOH HOH . D 4 HOH A 75 675 43 HOH HOH . D 4 HOH A 76 676 99 HOH HOH . D 4 HOH A 77 677 30 HOH HOH . D 4 HOH A 78 678 10 HOH HOH . D 4 HOH A 79 679 8 HOH HOH . D 4 HOH A 80 680 33 HOH HOH . D 4 HOH A 81 681 31 HOH HOH . D 4 HOH A 82 682 87 HOH HOH . D 4 HOH A 83 683 5 HOH HOH . D 4 HOH A 84 684 153 HOH HOH . D 4 HOH A 85 685 41 HOH HOH . D 4 HOH A 86 686 11 HOH HOH . D 4 HOH A 87 687 129 HOH HOH . D 4 HOH A 88 688 134 HOH HOH . D 4 HOH A 89 689 28 HOH HOH . D 4 HOH A 90 690 73 HOH HOH . D 4 HOH A 91 691 163 HOH HOH . D 4 HOH A 92 692 120 HOH HOH . D 4 HOH A 93 693 96 HOH HOH . D 4 HOH A 94 694 104 HOH HOH . D 4 HOH A 95 695 101 HOH HOH . D 4 HOH A 96 696 118 HOH HOH . D 4 HOH A 97 697 107 HOH HOH . D 4 HOH A 98 698 18 HOH HOH . D 4 HOH A 99 699 130 HOH HOH . D 4 HOH A 100 700 16 HOH HOH . D 4 HOH A 101 701 2 HOH HOH . D 4 HOH A 102 702 64 HOH HOH . D 4 HOH A 103 703 12 HOH HOH . D 4 HOH A 104 704 79 HOH HOH . D 4 HOH A 105 705 127 HOH HOH . D 4 HOH A 106 706 126 HOH HOH . D 4 HOH A 107 707 112 HOH HOH . D 4 HOH A 108 708 39 HOH HOH . D 4 HOH A 109 709 56 HOH HOH . D 4 HOH A 110 710 100 HOH HOH . D 4 HOH A 111 711 54 HOH HOH . D 4 HOH A 112 712 4 HOH HOH . D 4 HOH A 113 713 84 HOH HOH . D 4 HOH A 114 714 103 HOH HOH . D 4 HOH A 115 715 51 HOH HOH . D 4 HOH A 116 716 17 HOH HOH . D 4 HOH A 117 717 68 HOH HOH . D 4 HOH A 118 718 23 HOH HOH . D 4 HOH A 119 719 66 HOH HOH . D 4 HOH A 120 720 52 HOH HOH . D 4 HOH A 121 721 48 HOH HOH . D 4 HOH A 122 722 88 HOH HOH . D 4 HOH A 123 723 82 HOH HOH . D 4 HOH A 124 724 164 HOH HOH . D 4 HOH A 125 725 40 HOH HOH . D 4 HOH A 126 726 72 HOH HOH . D 4 HOH A 127 727 34 HOH HOH . D 4 HOH A 128 728 65 HOH HOH . D 4 HOH A 129 729 111 HOH HOH . D 4 HOH A 130 730 89 HOH HOH . D 4 HOH A 131 731 116 HOH HOH . D 4 HOH A 132 732 90 HOH HOH . D 4 HOH A 133 733 97 HOH HOH . D 4 HOH A 134 734 109 HOH HOH . D 4 HOH A 135 735 158 HOH HOH . D 4 HOH A 136 736 95 HOH HOH . D 4 HOH A 137 737 47 HOH HOH . D 4 HOH A 138 738 27 HOH HOH . D 4 HOH A 139 739 85 HOH HOH . D 4 HOH A 140 740 132 HOH HOH . D 4 HOH A 141 741 32 HOH HOH . D 4 HOH A 142 742 59 HOH HOH . D 4 HOH A 143 743 156 HOH HOH . D 4 HOH A 144 744 138 HOH HOH . D 4 HOH A 145 745 152 HOH HOH . D 4 HOH A 146 746 161 HOH HOH . D 4 HOH A 147 747 137 HOH HOH . D 4 HOH A 148 748 142 HOH HOH . D 4 HOH A 149 749 80 HOH HOH . D 4 HOH A 150 750 114 HOH HOH . D 4 HOH A 151 751 121 HOH HOH . D 4 HOH A 152 752 155 HOH HOH . D 4 HOH A 153 753 122 HOH HOH . D 4 HOH A 154 754 146 HOH HOH . D 4 HOH A 155 755 49 HOH HOH . D 4 HOH A 156 756 53 HOH HOH . D 4 HOH A 157 757 71 HOH HOH . D 4 HOH A 158 758 117 HOH HOH . D 4 HOH A 159 759 162 HOH HOH . D 4 HOH A 160 760 115 HOH HOH . D 4 HOH A 161 761 133 HOH HOH . D 4 HOH A 162 762 154 HOH HOH . D 4 HOH A 163 763 91 HOH HOH . D 4 HOH A 164 764 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 4MI . . . C 3 -2.033 -7.601 -19.163 1 22.94 ? C01 4MI 502 A 1 HETATM 2 S S02 4MI . . . C 3 -3.602 -6.851 -19.645 1 35.41 ? S02 4MI 502 A 1 HETATM 3 C C03 4MI . . . C 3 -3.607 -5.188 -18.933 1 33.78 ? C03 4MI 502 A 1 HETATM 4 C C04 4MI . . . C 3 -2.776 -4.892 -17.862 1 27.44 ? C04 4MI 502 A 1 HETATM 5 C C05 4MI . . . C 3 -2.788 -3.625 -17.309 1 25.49 ? C05 4MI 502 A 1 HETATM 6 C C06 4MI . . . C 3 -3.63 -2.66 -17.831 1 29.93 ? C06 4MI 502 A 1 HETATM 7 C C07 4MI . . . C 3 -4.464 -2.956 -18.896 1 32.5 ? C07 4MI 502 A 1 HETATM 8 C C08 4MI . . . C 3 -4.454 -4.224 -19.447 1 28.3 ? C08 4MI 502 A 1 HETATM 9 C C09 4MI . . . C 3 -3.647 -1.26 -17.234 1 25.73 ? C09 4MI 502 A 1 HETATM 10 O O10 4MI . . . C 3 -2.723 -0.9 -16.453 1 18.54 ? O10 4MI 502 A 1 HETATM 11 O O11 4MI . . . C 3 -4.581 -0.473 -17.539 1 27 ? O11 4MI 502 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #