data_8DYC # _model_server_result.job_id yN0_GK7KdqCHlrlhmYhH5Q _model_server_result.datetime_utc '2024-11-14 19:39:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8DYC # _exptl.entry_id 8DYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-butyl-6-(butylamino)-1H-benzo[de]isoquinoline-1,3(2H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DYC _cell.length_a 78.069 _cell.length_b 101.239 _cell.length_c 130.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 E O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C20 H24 N2 O2' _chem_comp.formula_weight 324.417 _chem_comp.id UC7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-butyl-6-(butylamino)-1H-benzo[de]isoquinoline-1,3(2H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C17 UC7 doub 453 n n C16 C15 UC7 sing 454 n n C15 C14 UC7 sing 455 n n C20 C21 UC7 sing 456 n y C20 C19 UC7 doub 457 n y C21 C22 UC7 doub 458 n y C17 C19 UC7 sing 459 n n C17 N12 UC7 sing 460 n n C19 C24 UC7 sing 461 n y C14 C13 UC7 sing 462 n n C13 N12 UC7 sing 463 n n N12 C10 UC7 sing 464 n n C22 C23 UC7 sing 465 n y C24 C23 UC7 doub 466 n y C24 C09 UC7 sing 467 n y C23 C06 UC7 sing 468 n y C10 C09 UC7 sing 469 n n C10 O11 UC7 doub 470 n n C09 C08 UC7 doub 471 n y C06 N05 UC7 sing 472 n n C06 C07 UC7 doub 473 n y N05 C04 UC7 sing 474 n n C08 C07 UC7 sing 475 n y C04 C03 UC7 sing 476 n n C03 C02 UC7 sing 477 n n C02 C01 UC7 sing 478 n n C01 H1 UC7 sing 479 n n C01 H2 UC7 sing 480 n n C01 H3 UC7 sing 481 n n C02 H4 UC7 sing 482 n n C02 H5 UC7 sing 483 n n C03 H6 UC7 sing 484 n n C03 H7 UC7 sing 485 n n C04 H8 UC7 sing 486 n n C04 H9 UC7 sing 487 n n C07 H10 UC7 sing 488 n n C08 H11 UC7 sing 489 n n C13 H12 UC7 sing 490 n n C13 H13 UC7 sing 491 n n C14 H14 UC7 sing 492 n n C14 H15 UC7 sing 493 n n C15 H16 UC7 sing 494 n n C15 H17 UC7 sing 495 n n C16 H18 UC7 sing 496 n n C16 H19 UC7 sing 497 n n C16 H20 UC7 sing 498 n n C20 H21 UC7 sing 499 n n C21 H22 UC7 sing 500 n n C22 H23 UC7 sing 501 n n N05 H24 UC7 sing 502 n n # _atom_sites.entry_id 8DYC _atom_sites.fract_transf_matrix[1][1] 0.012809 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 UC7 A 1 602 600 UC7 FLO . D 4 GOL A 1 603 700 GOL GOL . E 5 HOH A 1 701 3 HOH HOH . E 5 HOH A 2 702 8 HOH HOH . E 5 HOH A 3 703 2 HOH HOH . E 5 HOH A 4 704 1 HOH HOH . E 5 HOH A 5 705 6 HOH HOH . E 5 HOH A 6 706 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 UC7 . . . C 3 -28.199 -5.418 -8.079 0.88 69.84 ? C01 UC7 602 A 1 HETATM 2 C C02 UC7 . . . C 3 -28.409 -6.861 -8.49 0.88 75.27 ? C02 UC7 602 A 1 HETATM 3 C C03 UC7 . . . C 3 -29.184 -7.003 -9.792 0.88 79.24 ? C03 UC7 602 A 1 HETATM 4 C C04 UC7 . . . C 3 -29.47 -8.473 -10.092 0.88 75.62 ? C04 UC7 602 A 1 HETATM 5 C C06 UC7 . . . C 3 -28.046 -9.413 -11.848 0.88 75.75 ? C06 UC7 602 A 1 HETATM 6 C C07 UC7 . . . C 3 -27.184 -9.995 -10.909 0.88 76.9 ? C07 UC7 602 A 1 HETATM 7 C C08 UC7 . . . C 3 -26.006 -10.685 -11.247 0.88 78.4 ? C08 UC7 602 A 1 HETATM 8 C C09 UC7 . . . C 3 -25.591 -10.832 -12.57 0.88 83.02 ? C09 UC7 602 A 1 HETATM 9 C C10 UC7 . . . C 3 -24.334 -11.546 -12.976 0.88 78.48 ? C10 UC7 602 A 1 HETATM 10 C C13 UC7 . . . C 3 -22.747 -12.357 -14.755 0.88 79.76 ? C13 UC7 602 A 1 HETATM 11 C C14 UC7 . . . C 3 -23.008 -13.851 -14.928 0.88 73.61 ? C14 UC7 602 A 1 HETATM 12 C C15 UC7 . . . C 3 -23.473 -14.137 -16.358 0.88 66.11 ? C15 UC7 602 A 1 HETATM 13 C C16 UC7 . . . C 3 -24.702 -15.02 -16.402 0.88 59.5 ? C16 UC7 602 A 1 HETATM 14 C C17 UC7 . . . C 3 -24.782 -11.08 -15.38 0.88 91.18 ? C17 UC7 602 A 1 HETATM 15 C C19 UC7 . . . C 3 -26.045 -10.354 -15.046 0.88 85.29 ? C19 UC7 602 A 1 HETATM 16 C C20 UC7 . . . C 3 -26.87 -9.786 -16.009 0.88 75.6 ? C20 UC7 602 A 1 HETATM 17 C C21 UC7 . . . C 3 -28.048 -9.124 -15.65 0.88 75.33 ? C21 UC7 602 A 1 HETATM 18 C C22 UC7 . . . C 3 -28.46 -8.986 -14.316 0.88 79.49 ? C22 UC7 602 A 1 HETATM 19 C C23 UC7 . . . C 3 -27.687 -9.521 -13.285 0.88 72.8 ? C23 UC7 602 A 1 HETATM 20 C C24 UC7 . . . C 3 -26.442 -10.233 -13.627 0.88 80.47 ? C24 UC7 602 A 1 HETATM 21 N N05 UC7 . . . C 3 -29.193 -8.778 -11.482 0.88 75.2 ? N05 UC7 602 A 1 HETATM 22 N N12 UC7 . . . C 3 -23.975 -11.655 -14.354 0.88 85.18 ? N12 UC7 602 A 1 HETATM 23 O O11 UC7 . . . C 3 -23.607 -12.055 -12.1 0.88 84.05 ? O11 UC7 602 A 1 HETATM 24 O O18 UC7 . . . C 3 -24.448 -11.183 -16.579 0.88 95.54 ? O18 UC7 602 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #