data_8DYH
#
_model_server_result.job_id            KFAccrW_6CjT88YORm2xCg 
_model_server_result.datetime_utc      '2024-12-26 14:36:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dyh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8DYH 
#
_exptl.entry_id    8DYH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.79 
_cell.angle_gamma         90 
_cell.entry_id            8DYH 
_cell.length_a            170.516 
_cell.length_b            35.71 
_cell.length_c            45.715 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 A CYS 94 1_555 A SG CYS 116 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf2 A SG CYS 71 A CYS 99 1_555 A SG CYS 118 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf3 B SG CYS 66 B CYS 94 1_555 B SG CYS 116 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
disulf ? disulf4 B SG CYS 71 B CYS 99 1_555 B SG CYS 118 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8DYH 
_atom_sites.fract_transf_matrix[1][1]    0.005865 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000802 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028003 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022078 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 U5X A 1 201 1 U5X UNL . 
D 3 GOL B 1 201 201 GOL GOL . 
E 2 U5X B 1 202 2 U5X UNL . 
F 4 HOH A 1 301 124 HOH HOH . 
F 4 HOH A 2 302 137 HOH HOH . 
F 4 HOH A 3 303 33 HOH HOH . 
F 4 HOH A 4 304 75 HOH HOH . 
F 4 HOH A 5 305 6 HOH HOH . 
F 4 HOH A 6 306 114 HOH HOH . 
F 4 HOH A 7 307 69 HOH HOH . 
F 4 HOH A 8 308 55 HOH HOH . 
F 4 HOH A 9 309 23 HOH HOH . 
F 4 HOH A 10 310 70 HOH HOH . 
F 4 HOH A 11 311 76 HOH HOH . 
F 4 HOH A 12 312 59 HOH HOH . 
F 4 HOH A 13 313 82 HOH HOH . 
F 4 HOH A 14 314 133 HOH HOH . 
F 4 HOH A 15 315 16 HOH HOH . 
F 4 HOH A 16 316 1 HOH HOH . 
F 4 HOH A 17 317 8 HOH HOH . 
F 4 HOH A 18 318 72 HOH HOH . 
F 4 HOH A 19 319 35 HOH HOH . 
F 4 HOH A 20 320 3 HOH HOH . 
F 4 HOH A 21 321 62 HOH HOH . 
F 4 HOH A 22 322 43 HOH HOH . 
F 4 HOH A 23 323 87 HOH HOH . 
F 4 HOH A 24 324 100 HOH HOH . 
F 4 HOH A 25 325 22 HOH HOH . 
F 4 HOH A 26 326 77 HOH HOH . 
F 4 HOH A 27 327 83 HOH HOH . 
F 4 HOH A 28 328 25 HOH HOH . 
F 4 HOH A 29 329 125 HOH HOH . 
F 4 HOH A 30 330 56 HOH HOH . 
F 4 HOH A 31 331 57 HOH HOH . 
F 4 HOH A 32 332 31 HOH HOH . 
F 4 HOH A 33 333 20 HOH HOH . 
F 4 HOH A 34 334 88 HOH HOH . 
F 4 HOH A 35 335 110 HOH HOH . 
F 4 HOH A 36 336 129 HOH HOH . 
F 4 HOH A 37 337 53 HOH HOH . 
F 4 HOH A 38 338 54 HOH HOH . 
F 4 HOH A 39 339 14 HOH HOH . 
F 4 HOH A 40 340 13 HOH HOH . 
F 4 HOH A 41 341 109 HOH HOH . 
F 4 HOH A 42 342 84 HOH HOH . 
F 4 HOH A 43 343 81 HOH HOH . 
F 4 HOH A 44 344 9 HOH HOH . 
F 4 HOH A 45 345 45 HOH HOH . 
F 4 HOH A 46 346 80 HOH HOH . 
F 4 HOH A 47 347 18 HOH HOH . 
F 4 HOH A 48 348 12 HOH HOH . 
F 4 HOH A 49 349 37 HOH HOH . 
F 4 HOH A 50 350 105 HOH HOH . 
F 4 HOH A 51 351 63 HOH HOH . 
F 4 HOH A 52 352 11 HOH HOH . 
F 4 HOH A 53 353 51 HOH HOH . 
F 4 HOH A 54 354 122 HOH HOH . 
F 4 HOH A 55 355 85 HOH HOH . 
F 4 HOH A 56 356 74 HOH HOH . 
F 4 HOH A 57 357 99 HOH HOH . 
F 4 HOH A 58 358 40 HOH HOH . 
F 4 HOH A 59 359 27 HOH HOH . 
F 4 HOH A 60 360 64 HOH HOH . 
F 4 HOH A 61 361 68 HOH HOH . 
F 4 HOH A 62 362 111 HOH HOH . 
F 4 HOH A 63 363 120 HOH HOH . 
F 4 HOH A 64 364 86 HOH HOH . 
F 4 HOH A 65 365 71 HOH HOH . 
F 4 HOH A 66 366 65 HOH HOH . 
F 4 HOH A 67 367 96 HOH HOH . 
F 4 HOH A 68 368 127 HOH HOH . 
F 4 HOH A 69 369 95 HOH HOH . 
F 4 HOH A 70 370 107 HOH HOH . 
F 4 HOH A 71 371 132 HOH HOH . 
G 4 HOH B 1 301 79 HOH HOH . 
G 4 HOH B 2 302 115 HOH HOH . 
G 4 HOH B 3 303 52 HOH HOH . 
G 4 HOH B 4 304 73 HOH HOH . 
G 4 HOH B 5 305 101 HOH HOH . 
G 4 HOH B 6 306 7 HOH HOH . 
G 4 HOH B 7 307 108 HOH HOH . 
G 4 HOH B 8 308 112 HOH HOH . 
G 4 HOH B 9 309 36 HOH HOH . 
G 4 HOH B 10 310 89 HOH HOH . 
G 4 HOH B 11 311 2 HOH HOH . 
G 4 HOH B 12 312 93 HOH HOH . 
G 4 HOH B 13 313 30 HOH HOH . 
G 4 HOH B 14 314 5 HOH HOH . 
G 4 HOH B 15 315 47 HOH HOH . 
G 4 HOH B 16 316 66 HOH HOH . 
G 4 HOH B 17 317 60 HOH HOH . 
G 4 HOH B 18 318 49 HOH HOH . 
G 4 HOH B 19 319 44 HOH HOH . 
G 4 HOH B 20 320 67 HOH HOH . 
G 4 HOH B 21 321 58 HOH HOH . 
G 4 HOH B 22 322 10 HOH HOH . 
G 4 HOH B 23 323 17 HOH HOH . 
G 4 HOH B 24 324 39 HOH HOH . 
G 4 HOH B 25 325 4 HOH HOH . 
G 4 HOH B 26 326 32 HOH HOH . 
G 4 HOH B 27 327 48 HOH HOH . 
G 4 HOH B 28 328 117 HOH HOH . 
G 4 HOH B 29 329 46 HOH HOH . 
G 4 HOH B 30 330 131 HOH HOH . 
G 4 HOH B 31 331 91 HOH HOH . 
G 4 HOH B 32 332 15 HOH HOH . 
G 4 HOH B 33 333 90 HOH HOH . 
G 4 HOH B 34 334 29 HOH HOH . 
G 4 HOH B 35 335 134 HOH HOH . 
G 4 HOH B 36 336 34 HOH HOH . 
G 4 HOH B 37 337 19 HOH HOH . 
G 4 HOH B 38 338 41 HOH HOH . 
G 4 HOH B 39 339 26 HOH HOH . 
G 4 HOH B 40 340 24 HOH HOH . 
G 4 HOH B 41 341 78 HOH HOH . 
G 4 HOH B 42 342 50 HOH HOH . 
G 4 HOH B 43 343 121 HOH HOH . 
G 4 HOH B 44 344 61 HOH HOH . 
G 4 HOH B 45 345 21 HOH HOH . 
G 4 HOH B 46 346 128 HOH HOH . 
G 4 HOH B 47 347 97 HOH HOH . 
G 4 HOH B 48 348 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -30.134 -0.701 14.271 1 40.76 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . D 3 -30.542 -1.891 14.95 1 39.7 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . D 3 -29.097 -1.098 13.248 1 43.28 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . D 3 -28.927 -0.071 12.281 1 43.41 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . D 3 -27.775 -1.358 13.963 1 46.01 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . D 3 -27.312 -0.123 14.441 1 46.32 ? O3 GOL 201 B 1 
HETATM 7 H H11 GOL . . . D 3 -29.753 -0.042 14.872 1 48.87 ? H11 GOL 201 B 1 
HETATM 8 H H12 GOL . . . D 3 -30.871 -0.258 13.823 1 48.87 ? H12 GOL 201 B 1 
HETATM 9 H HO1 GOL . . . D 3 -31.064 -1.652 15.579 1 47.6 ? HO1 GOL 201 B 1 
HETATM 10 H H2 GOL . . . D 3 -29.398 -1.911 12.814 1 51.9 ? H2 GOL 201 B 1 
HETATM 11 H HO2 GOL . . . D 3 -29.023 0.694 12.694 1 52.06 ? HO2 GOL 201 B 1 
HETATM 12 H H31 GOL . . . D 3 -27.163 -1.784 13.344 1 55.18 ? H31 GOL 201 B 1 
HETATM 13 H H32 GOL . . . D 3 -27.923 -2.01 14.666 1 55.18 ? H32 GOL 201 B 1 
HETATM 14 H HO3 GOL . . . D 3 -26.989 0.297 13.767 1 55.55 ? HO3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#