data_8DYH # _model_server_result.job_id NxMKGRN0qtwoH8PUZhg14w _model_server_result.datetime_utc '2024-12-26 14:09:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 8DYH # _exptl.entry_id 8DYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.825 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5P)-N-benzyl-6-chloro-5-(quinolin-5-yl)pyridin-3-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.79 _cell.angle_gamma 90 _cell.entry_id 8DYH _cell.length_a 170.516 _cell.length_b 35.71 _cell.length_c 45.715 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 94 1_555 A SG CYS 116 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 71 A CYS 99 1_555 A SG CYS 118 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 B SG CYS 66 B CYS 94 1_555 B SG CYS 116 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf4 B SG CYS 71 B CYS 99 1_555 B SG CYS 118 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'C21 H16 Cl N3' _chem_comp.formula_weight 345.825 _chem_comp.id U5X _chem_comp.mon_nstd_flag . _chem_comp.name (5P)-N-benzyl-6-chloro-5-(quinolin-5-yl)pyridin-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N21 C22 U5X doub 371 n y N21 C19 U5X sing 372 n y C18 C19 U5X doub 373 n y C18 C17 U5X sing 374 n y C22 C23 U5X sing 375 n y C19 C20 U5X sing 376 n y CL25 C12 U5X sing 377 n n C17 C16 U5X doub 378 n y C23 C24 U5X doub 379 n y C20 C24 U5X sing 380 n y C20 C15 U5X doub 381 n y C16 C15 U5X sing 382 n y C15 C11 U5X sing 383 n n C12 C11 U5X doub 384 n y C12 N13 U5X sing 385 n y C11 C10 U5X sing 386 n y N13 C14 U5X doub 387 n y C10 C9 U5X doub 388 n y C14 C9 U5X sing 389 n y C9 N8 U5X sing 390 n n N8 C7 U5X sing 391 n n C7 C5 U5X sing 392 n n C4 C5 U5X doub 393 n y C4 C3 U5X sing 394 n y C5 C6 U5X sing 395 n y C3 C2 U5X doub 396 n y C6 C1 U5X doub 397 n y C2 C1 U5X sing 398 n y C1 H26 U5X sing 399 n n C10 H34 U5X sing 400 n n C14 H35 U5X sing 401 n n C16 H36 U5X sing 402 n n C17 H37 U5X sing 403 n n C18 H38 U5X sing 404 n n C2 H27 U5X sing 405 n n C22 H39 U5X sing 406 n n C23 H40 U5X sing 407 n n C24 H41 U5X sing 408 n n C3 H28 U5X sing 409 n n C4 H29 U5X sing 410 n n C6 H30 U5X sing 411 n n C7 H31 U5X sing 412 n n C7 H32 U5X sing 413 n n N8 H33 U5X sing 414 n n # _atom_sites.entry_id 8DYH _atom_sites.fract_transf_matrix[1][1] 0.005865 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000802 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U5X A 1 201 1 U5X UNL . D 3 GOL B 1 201 201 GOL GOL . E 2 U5X B 1 202 2 U5X UNL . F 4 HOH A 1 301 124 HOH HOH . F 4 HOH A 2 302 137 HOH HOH . F 4 HOH A 3 303 33 HOH HOH . F 4 HOH A 4 304 75 HOH HOH . F 4 HOH A 5 305 6 HOH HOH . F 4 HOH A 6 306 114 HOH HOH . F 4 HOH A 7 307 69 HOH HOH . F 4 HOH A 8 308 55 HOH HOH . F 4 HOH A 9 309 23 HOH HOH . F 4 HOH A 10 310 70 HOH HOH . F 4 HOH A 11 311 76 HOH HOH . F 4 HOH A 12 312 59 HOH HOH . F 4 HOH A 13 313 82 HOH HOH . F 4 HOH A 14 314 133 HOH HOH . F 4 HOH A 15 315 16 HOH HOH . F 4 HOH A 16 316 1 HOH HOH . F 4 HOH A 17 317 8 HOH HOH . F 4 HOH A 18 318 72 HOH HOH . F 4 HOH A 19 319 35 HOH HOH . F 4 HOH A 20 320 3 HOH HOH . F 4 HOH A 21 321 62 HOH HOH . F 4 HOH A 22 322 43 HOH HOH . F 4 HOH A 23 323 87 HOH HOH . F 4 HOH A 24 324 100 HOH HOH . F 4 HOH A 25 325 22 HOH HOH . F 4 HOH A 26 326 77 HOH HOH . F 4 HOH A 27 327 83 HOH HOH . F 4 HOH A 28 328 25 HOH HOH . F 4 HOH A 29 329 125 HOH HOH . F 4 HOH A 30 330 56 HOH HOH . F 4 HOH A 31 331 57 HOH HOH . F 4 HOH A 32 332 31 HOH HOH . F 4 HOH A 33 333 20 HOH HOH . F 4 HOH A 34 334 88 HOH HOH . F 4 HOH A 35 335 110 HOH HOH . F 4 HOH A 36 336 129 HOH HOH . F 4 HOH A 37 337 53 HOH HOH . F 4 HOH A 38 338 54 HOH HOH . F 4 HOH A 39 339 14 HOH HOH . F 4 HOH A 40 340 13 HOH HOH . F 4 HOH A 41 341 109 HOH HOH . F 4 HOH A 42 342 84 HOH HOH . F 4 HOH A 43 343 81 HOH HOH . F 4 HOH A 44 344 9 HOH HOH . F 4 HOH A 45 345 45 HOH HOH . F 4 HOH A 46 346 80 HOH HOH . F 4 HOH A 47 347 18 HOH HOH . F 4 HOH A 48 348 12 HOH HOH . F 4 HOH A 49 349 37 HOH HOH . F 4 HOH A 50 350 105 HOH HOH . F 4 HOH A 51 351 63 HOH HOH . F 4 HOH A 52 352 11 HOH HOH . F 4 HOH A 53 353 51 HOH HOH . F 4 HOH A 54 354 122 HOH HOH . F 4 HOH A 55 355 85 HOH HOH . F 4 HOH A 56 356 74 HOH HOH . F 4 HOH A 57 357 99 HOH HOH . F 4 HOH A 58 358 40 HOH HOH . F 4 HOH A 59 359 27 HOH HOH . F 4 HOH A 60 360 64 HOH HOH . F 4 HOH A 61 361 68 HOH HOH . F 4 HOH A 62 362 111 HOH HOH . F 4 HOH A 63 363 120 HOH HOH . F 4 HOH A 64 364 86 HOH HOH . F 4 HOH A 65 365 71 HOH HOH . F 4 HOH A 66 366 65 HOH HOH . F 4 HOH A 67 367 96 HOH HOH . F 4 HOH A 68 368 127 HOH HOH . F 4 HOH A 69 369 95 HOH HOH . F 4 HOH A 70 370 107 HOH HOH . F 4 HOH A 71 371 132 HOH HOH . G 4 HOH B 1 301 79 HOH HOH . G 4 HOH B 2 302 115 HOH HOH . G 4 HOH B 3 303 52 HOH HOH . G 4 HOH B 4 304 73 HOH HOH . G 4 HOH B 5 305 101 HOH HOH . G 4 HOH B 6 306 7 HOH HOH . G 4 HOH B 7 307 108 HOH HOH . G 4 HOH B 8 308 112 HOH HOH . G 4 HOH B 9 309 36 HOH HOH . G 4 HOH B 10 310 89 HOH HOH . G 4 HOH B 11 311 2 HOH HOH . G 4 HOH B 12 312 93 HOH HOH . G 4 HOH B 13 313 30 HOH HOH . G 4 HOH B 14 314 5 HOH HOH . G 4 HOH B 15 315 47 HOH HOH . G 4 HOH B 16 316 66 HOH HOH . G 4 HOH B 17 317 60 HOH HOH . G 4 HOH B 18 318 49 HOH HOH . G 4 HOH B 19 319 44 HOH HOH . G 4 HOH B 20 320 67 HOH HOH . G 4 HOH B 21 321 58 HOH HOH . G 4 HOH B 22 322 10 HOH HOH . G 4 HOH B 23 323 17 HOH HOH . G 4 HOH B 24 324 39 HOH HOH . G 4 HOH B 25 325 4 HOH HOH . G 4 HOH B 26 326 32 HOH HOH . G 4 HOH B 27 327 48 HOH HOH . G 4 HOH B 28 328 117 HOH HOH . G 4 HOH B 29 329 46 HOH HOH . G 4 HOH B 30 330 131 HOH HOH . G 4 HOH B 31 331 91 HOH HOH . G 4 HOH B 32 332 15 HOH HOH . G 4 HOH B 33 333 90 HOH HOH . G 4 HOH B 34 334 29 HOH HOH . G 4 HOH B 35 335 134 HOH HOH . G 4 HOH B 36 336 34 HOH HOH . G 4 HOH B 37 337 19 HOH HOH . G 4 HOH B 38 338 41 HOH HOH . G 4 HOH B 39 339 26 HOH HOH . G 4 HOH B 40 340 24 HOH HOH . G 4 HOH B 41 341 78 HOH HOH . G 4 HOH B 42 342 50 HOH HOH . G 4 HOH B 43 343 121 HOH HOH . G 4 HOH B 44 344 61 HOH HOH . G 4 HOH B 45 345 21 HOH HOH . G 4 HOH B 46 346 128 HOH HOH . G 4 HOH B 47 347 97 HOH HOH . G 4 HOH B 48 348 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U5X . . . E 2 -51.566 3.118 16.491 1 22.67 ? C1 U5X 202 B 1 HETATM 2 C C10 U5X . . . E 2 -48.736 -2.268 18.867 1 18.11 ? C10 U5X 202 B 1 HETATM 3 C C11 U5X . . . E 2 -48.363 -2.261 20.185 1 19.49 ? C11 U5X 202 B 1 HETATM 4 C C12 U5X . . . E 2 -48.976 -1.277 20.92 1 19.42 ? C12 U5X 202 B 1 HETATM 5 C C14 U5X . . . E 2 -50.084 -0.377 19.182 1 19.98 ? C14 U5X 202 B 1 HETATM 6 C C15 U5X . . . E 2 -47.346 -3.194 20.698 1 18.29 ? C15 U5X 202 B 1 HETATM 7 C C16 U5X . . . E 2 -46.037 -3.098 20.267 1 17.76 ? C16 U5X 202 B 1 HETATM 8 C C17 U5X . . . E 2 -45.072 -3.988 20.696 1 17.45 ? C17 U5X 202 B 1 HETATM 9 C C18 U5X . . . E 2 -45.416 -5.006 21.556 1 17.74 ? C18 U5X 202 B 1 HETATM 10 C C19 U5X . . . E 2 -46.707 -5.125 22.022 1 18 ? C19 U5X 202 B 1 HETATM 11 C C2 U5X . . . E 2 -50.436 3.571 15.858 1 19.16 ? C2 U5X 202 B 1 HETATM 12 C C20 U5X . . . E 2 -47.645 -4.201 21.588 1 19.39 ? C20 U5X 202 B 1 HETATM 13 C C22 U5X . . . E 2 -48.26 -6.192 23.309 1 20.19 ? C22 U5X 202 B 1 HETATM 14 C C23 U5X . . . E 2 -49.258 -5.328 22.921 1 21.17 ? C23 U5X 202 B 1 HETATM 15 C C24 U5X . . . E 2 -48.938 -4.309 22.049 1 18.88 ? C24 U5X 202 B 1 HETATM 16 C C3 U5X . . . E 2 -49.494 2.658 15.457 1 21.3 ? C3 U5X 202 B 1 HETATM 17 C C4 U5X . . . E 2 -49.678 1.311 15.688 1 21.73 ? C4 U5X 202 B 1 HETATM 18 C C5 U5X . . . E 2 -50.804 0.863 16.329 1 20.8 ? C5 U5X 202 B 1 HETATM 19 C C6 U5X . . . E 2 -51.749 1.774 16.728 1 23.32 ? C6 U5X 202 B 1 HETATM 20 C C7 U5X . . . E 2 -51.049 -0.579 16.609 1 20.68 ? C7 U5X 202 B 1 HETATM 21 C C9 U5X . . . E 2 -49.587 -1.331 18.326 1 18.9 ? C9 U5X 202 B 1 HETATM 22 N N13 U5X . . . E 2 -49.826 -0.345 20.492 1 20.01 ? N13 U5X 202 B 1 HETATM 23 N N21 U5X . . . E 2 -47.001 -6.106 22.877 1 19.73 ? N21 U5X 202 B 1 HETATM 24 N N8 U5X . . . E 2 -49.896 -1.402 16.958 1 16.57 ? N8 U5X 202 B 1 HETATM 25 CL CL25 U5X . . . E 2 -48.625 -1.112 22.571 1 25.85 ? CL25 U5X 202 B 1 HETATM 26 H H26 U5X . . . E 2 -52.323 3.826 16.808 1 27.17 ? H26 U5X 202 B 1 HETATM 27 H H34 U5X . . . E 2 -48.344 -3.046 18.221 1 21.69 ? H34 U5X 202 B 1 HETATM 28 H H35 U5X . . . E 2 -50.728 0.411 18.809 1 23.94 ? H35 U5X 202 B 1 HETATM 29 H H36 U5X . . . E 2 -45.762 -2.307 19.579 1 21.28 ? H36 U5X 202 B 1 HETATM 30 H H37 U5X . . . E 2 -44.048 -3.886 20.355 1 20.9 ? H37 U5X 202 B 1 HETATM 31 H H38 U5X . . . E 2 -44.663 -5.72 21.871 1 21.25 ? H38 U5X 202 B 1 HETATM 32 H H27 U5X . . . E 2 -50.29 4.63 15.678 1 22.95 ? H27 U5X 202 B 1 HETATM 33 H H39 U5X . . . E 2 -48.471 -6.999 24.001 1 24.19 ? H39 U5X 202 B 1 HETATM 34 H H40 U5X . . . E 2 -50.27 -5.445 23.292 1 25.37 ? H40 U5X 202 B 1 HETATM 35 H H41 U5X . . . E 2 -49.695 -3.602 21.73 1 22.63 ? H41 U5X 202 B 1 HETATM 36 H H28 U5X . . . E 2 -48.596 2.998 14.955 1 25.53 ? H28 U5X 202 B 1 HETATM 37 H H29 U5X . . . E 2 -48.928 0.601 15.36 1 26.03 ? H29 U5X 202 B 1 HETATM 38 H H30 U5X . . . E 2 -52.645 1.434 17.233 1 27.95 ? H30 U5X 202 B 1 HETATM 39 H H31 U5X . . . E 2 -51.761 -0.634 17.436 1 24.78 ? H31 U5X 202 B 1 HETATM 40 H H32 U5X . . . E 2 -51.51 -1.01 15.717 1 24.78 ? H32 U5X 202 B 1 HETATM 41 H H33 U5X . . . E 2 -50.074 -2.377 16.723 1 19.84 ? H33 U5X 202 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 41 #