data_8DYI # _model_server_result.job_id SXTMICy2RF8CtW3xZQdgeQ _model_server_result.datetime_utc '2024-10-19 16:42:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8DYI # _exptl.entry_id 8DYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.529 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5P)-5-[5-(benzylamino)pyridin-3-yl]-N-[2-(morpholin-4-yl)ethyl]-1H-indazol-3-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.71 _cell.angle_gamma 90 _cell.entry_id 8DYI _cell.length_a 172.938 _cell.length_b 30.507 _cell.length_c 50.239 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 94 1_555 A SG CYS 116 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 71 A CYS 99 1_555 A SG CYS 118 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 B SG CYS 66 B CYS 94 1_555 B SG CYS 116 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 71 B CYS 99 1_555 B SG CYS 118 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C25 H28 N6 O' _chem_comp.formula_weight 428.529 _chem_comp.id U6C _chem_comp.mon_nstd_flag . _chem_comp.name (5P)-5-[5-(benzylamino)pyridin-3-yl]-N-[2-(morpholin-4-yl)ethyl]-1H-indazol-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 O30 U6C sing 358 n n C29 C28 U6C sing 359 n n O30 C31 U6C sing 360 n n C31 C32 U6C sing 361 n n C28 N27 U6C sing 362 n n C32 N27 U6C sing 363 n n N27 C26 U6C sing 364 n n C26 C25 U6C sing 365 n n C25 N10 U6C sing 366 n n N8 C9 U6C doub 367 n y N8 N7 U6C sing 368 n y N10 C9 U6C sing 369 n n C9 C2 U6C sing 370 n y N7 C1 U6C sing 371 n y C2 C1 U6C doub 372 n y C2 C3 U6C sing 373 n y C1 C6 U6C sing 374 n y C3 C4 U6C doub 375 n y C6 C5 U6C doub 376 n y C4 C5 U6C sing 377 n y C4 C11 U6C sing 378 n n C11 C12 U6C doub 379 n y C11 C16 U6C sing 380 n y C12 N13 U6C sing 381 n y C16 C15 U6C doub 382 n y N13 C14 U6C doub 383 n y C15 C14 U6C sing 384 n y C15 N17 U6C sing 385 n n N17 C18 U6C sing 386 n n C18 C19 U6C sing 387 n n C19 C20 U6C doub 388 n y C19 C24 U6C sing 389 n y C20 C21 U6C sing 390 n y C24 C23 U6C doub 391 n y C21 C22 U6C doub 392 n y C23 C22 U6C sing 393 n y C12 H38 U6C sing 394 n n C14 H39 U6C sing 395 n n C16 H40 U6C sing 396 n n C18 H42 U6C sing 397 n n C18 H43 U6C sing 398 n n C20 H44 U6C sing 399 n n C21 H45 U6C sing 400 n n C22 H46 U6C sing 401 n n C23 H47 U6C sing 402 n n C24 H48 U6C sing 403 n n C25 H50 U6C sing 404 n n C25 H49 U6C sing 405 n n C26 H52 U6C sing 406 n n C26 H51 U6C sing 407 n n C28 H55 U6C sing 408 n n C28 H54 U6C sing 409 n n C29 H56 U6C sing 410 n n C29 H57 U6C sing 411 n n C3 H33 U6C sing 412 n n C31 H58 U6C sing 413 n n C31 H59 U6C sing 414 n n C32 H61 U6C sing 415 n n C32 H60 U6C sing 416 n n C5 H34 U6C sing 417 n n C6 H35 U6C sing 418 n n N10 H37 U6C sing 419 n n N17 H41 U6C sing 420 n n N7 H36 U6C sing 421 n n # _atom_sites.entry_id 8DYI _atom_sites.fract_transf_matrix[1][1] 0.005782 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001304 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U6C A 1 201 1 U6C UNL . D 2 U6C B 1 201 2 U6C UNL . E 3 HOH A 1 301 27 HOH HOH . E 3 HOH A 2 302 45 HOH HOH . E 3 HOH A 3 303 12 HOH HOH . E 3 HOH A 4 304 5 HOH HOH . E 3 HOH A 5 305 9 HOH HOH . E 3 HOH A 6 306 62 HOH HOH . E 3 HOH A 7 307 60 HOH HOH . E 3 HOH A 8 308 55 HOH HOH . E 3 HOH A 9 309 18 HOH HOH . E 3 HOH A 10 310 49 HOH HOH . E 3 HOH A 11 311 39 HOH HOH . E 3 HOH A 12 312 15 HOH HOH . E 3 HOH A 13 313 52 HOH HOH . E 3 HOH A 14 314 53 HOH HOH . E 3 HOH A 15 315 61 HOH HOH . E 3 HOH A 16 316 13 HOH HOH . E 3 HOH A 17 317 43 HOH HOH . E 3 HOH A 18 318 30 HOH HOH . E 3 HOH A 19 319 41 HOH HOH . E 3 HOH A 20 320 3 HOH HOH . E 3 HOH A 21 321 21 HOH HOH . E 3 HOH A 22 322 10 HOH HOH . E 3 HOH A 23 323 35 HOH HOH . E 3 HOH A 24 324 1 HOH HOH . E 3 HOH A 25 325 64 HOH HOH . E 3 HOH A 26 326 4 HOH HOH . E 3 HOH A 27 327 29 HOH HOH . E 3 HOH A 28 328 36 HOH HOH . E 3 HOH A 29 329 25 HOH HOH . E 3 HOH A 30 330 50 HOH HOH . E 3 HOH A 31 331 65 HOH HOH . E 3 HOH A 32 332 67 HOH HOH . E 3 HOH A 33 333 23 HOH HOH . E 3 HOH A 34 334 17 HOH HOH . E 3 HOH A 35 335 59 HOH HOH . E 3 HOH A 36 336 57 HOH HOH . E 3 HOH A 37 337 66 HOH HOH . F 3 HOH B 1 301 40 HOH HOH . F 3 HOH B 2 302 46 HOH HOH . F 3 HOH B 3 303 28 HOH HOH . F 3 HOH B 4 304 47 HOH HOH . F 3 HOH B 5 305 2 HOH HOH . F 3 HOH B 6 306 48 HOH HOH . F 3 HOH B 7 307 63 HOH HOH . F 3 HOH B 8 308 8 HOH HOH . F 3 HOH B 9 309 51 HOH HOH . F 3 HOH B 10 310 58 HOH HOH . F 3 HOH B 11 311 26 HOH HOH . F 3 HOH B 12 312 22 HOH HOH . F 3 HOH B 13 313 68 HOH HOH . F 3 HOH B 14 314 7 HOH HOH . F 3 HOH B 15 315 20 HOH HOH . F 3 HOH B 16 316 16 HOH HOH . F 3 HOH B 17 317 6 HOH HOH . F 3 HOH B 18 318 14 HOH HOH . F 3 HOH B 19 319 32 HOH HOH . F 3 HOH B 20 320 44 HOH HOH . F 3 HOH B 21 321 42 HOH HOH . F 3 HOH B 22 322 31 HOH HOH . F 3 HOH B 23 323 11 HOH HOH . F 3 HOH B 24 324 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U6C . . . C 2 -51.985 -15.111 0.92 1 51.36 ? C1 U6C 201 A 1 HETATM 2 C C11 U6C . . . C 2 -54.383 -15.484 4.256 1 42.49 ? C11 U6C 201 A 1 HETATM 3 C C12 U6C . . . C 2 -55.119 -16.621 4.488 1 41.54 ? C12 U6C 201 A 1 HETATM 4 C C14 U6C . . . C 2 -55.986 -15.781 6.379 1 35.4 ? C14 U6C 201 A 1 HETATM 5 C C15 U6C . . . C 2 -55.3 -14.597 6.244 1 38.48 ? C15 U6C 201 A 1 HETATM 6 C C16 U6C . . . C 2 -54.478 -14.452 5.156 1 39.04 ? C16 U6C 201 A 1 HETATM 7 C C18 U6C . . . C 2 -56.639 -13.461 7.873 1 36.54 ? C18 U6C 201 A 1 HETATM 8 C C19 U6C . . . C 2 -56.459 -14.078 9.211 1 40.3 ? C19 U6C 201 A 1 HETATM 9 C C2 U6C . . . C 2 -53.329 -15.35 0.757 1 54.02 ? C2 U6C 201 A 1 HETATM 10 C C20 U6C . . . C 2 -57.488 -14.773 9.796 1 40.81 ? C20 U6C 201 A 1 HETATM 11 C C21 U6C . . . C 2 -57.32 -15.343 11.034 1 40.46 ? C21 U6C 201 A 1 HETATM 12 C C22 U6C . . . C 2 -56.12 -15.216 11.692 1 40.19 ? C22 U6C 201 A 1 HETATM 13 C C23 U6C . . . C 2 -55.091 -14.516 11.107 1 38.6 ? C23 U6C 201 A 1 HETATM 14 C C24 U6C . . . C 2 -55.262 -13.947 9.868 1 40.03 ? C24 U6C 201 A 1 HETATM 15 C C25 U6C . . . C 2 -55.037 -15.593 -2.563 1 79.67 ? C25 U6C 201 A 1 HETATM 16 C C26 U6C . . . C 2 -56.546 -15.616 -2.732 1 85.18 ? C26 U6C 201 A 1 HETATM 17 C C28 U6C . . . C 2 -56.816 -14.414 -4.851 1 102.76 ? C28 U6C 201 A 1 HETATM 18 C C29 U6C . . . C 2 -57.303 -14.567 -6.272 1 109.85 ? C29 U6C 201 A 1 HETATM 19 C C3 U6C . . . C 2 -54.136 -15.475 1.87 1 43.4 ? C3 U6C 201 A 1 HETATM 20 C C31 U6C . . . C 2 -58.751 -16.256 -5.704 1 104.99 ? C31 U6C 201 A 1 HETATM 21 C C32 U6C . . . C 2 -58.334 -16.213 -4.254 1 101.47 ? C32 U6C 201 A 1 HETATM 22 C C4 U6C . . . C 2 -53.541 -15.357 3.102 1 46.55 ? C4 U6C 201 A 1 HETATM 23 C C5 U6C . . . C 2 -52.193 -15.112 3.242 1 42.04 ? C5 U6C 201 A 1 HETATM 24 C C6 U6C . . . C 2 -51.371 -14.983 2.144 1 47.8 ? C6 U6C 201 A 1 HETATM 25 C C9 U6C . . . C 2 -53.55 -15.412 -0.646 1 55.24 ? C9 U6C 201 A 1 HETATM 26 N N10 U6C . . . C 2 -54.793 -15.647 -1.137 1 59.86 ? N10 U6C 201 A 1 HETATM 27 N N13 U6C . . . C 2 -55.926 -16.81 5.534 1 40.8 ? N13 U6C 201 A 1 HETATM 28 N N17 U6C . . . C 2 -55.381 -13.533 7.162 1 40.56 ? N17 U6C 201 A 1 HETATM 29 N N27 U6C . . . C 2 -56.934 -15.725 -4.165 1 103.41 ? N27 U6C 201 A 1 HETATM 30 N N7 U6C . . . C 2 -51.491 -15.043 -0.35 1 53.64 ? N7 U6C 201 A 1 HETATM 31 N N8 U6C . . . C 2 -52.413 -15.222 -1.316 1 54.6 ? N8 U6C 201 A 1 HETATM 32 O O30 U6C . . . C 2 -58.67 -14.949 -6.251 1 111.88 ? O30 U6C 201 A 1 HETATM 33 H H38 U6C . . . C 2 -55.065 -17.45 3.791 1 49.48 ? H38 U6C 201 A 1 HETATM 34 H H39 U6C . . . C 2 -56.64 -15.927 7.231 1 42.12 ? H39 U6C 201 A 1 HETATM 35 H H40 U6C . . . C 2 -53.913 -13.539 5.01 1 46.48 ? H40 U6C 201 A 1 HETATM 36 H H42 U6C . . . C 2 -57.413 -14 7.32 1 43.49 ? H42 U6C 201 A 1 HETATM 37 H H43 U6C . . . C 2 -56.947 -12.419 7.986 1 43.49 ? H43 U6C 201 A 1 HETATM 38 H H44 U6C . . . C 2 -58.435 -14.873 9.278 1 48.61 ? H44 U6C 201 A 1 HETATM 39 H H45 U6C . . . C 2 -58.134 -15.894 11.493 1 48.18 ? H45 U6C 201 A 1 HETATM 40 H H46 U6C . . . C 2 -55.985 -15.666 12.669 1 47.86 ? H46 U6C 201 A 1 HETATM 41 H H47 U6C . . . C 2 -54.144 -14.412 11.625 1 45.96 ? H47 U6C 201 A 1 HETATM 42 H H48 U6C . . . C 2 -54.45 -13.395 9.409 1 47.67 ? H48 U6C 201 A 1 HETATM 43 H H50 U6C . . . C 2 -54.613 -14.678 -2.983 1 95.24 ? H50 U6C 201 A 1 HETATM 44 H H49 U6C . . . C 2 -54.578 -16.454 -3.057 1 95.24 ? H49 U6C 201 A 1 HETATM 45 H H52 U6C . . . C 2 -56.997 -16.473 -2.225 1 101.85 ? H52 U6C 201 A 1 HETATM 46 H H51 U6C . . . C 2 -57.009 -14.7 -2.357 1 101.85 ? H51 U6C 201 A 1 HETATM 47 H H55 U6C . . . C 2 -57.413 -13.695 -4.283 1 122.95 ? H55 U6C 201 A 1 HETATM 48 H H54 U6C . . . C 2 -55.765 -14.116 -4.802 1 122.95 ? H54 U6C 201 A 1 HETATM 49 H H56 U6C . . . C 2 -57.21 -13.624 -6.818 1 131.45 ? H56 U6C 201 A 1 HETATM 50 H H57 U6C . . . C 2 -56.732 -15.336 -6.798 1 131.45 ? H57 U6C 201 A 1 HETATM 51 H H33 U6C . . . C 2 -55.042 -16.067 1.798 1 51.71 ? H33 U6C 201 A 1 HETATM 52 H H58 U6C . . . C 2 -58.094 -16.916 -6.276 1 125.62 ? H58 U6C 201 A 1 HETATM 53 H H59 U6C . . . C 2 -59.78 -16.613 -5.8 1 125.62 ? H59 U6C 201 A 1 HETATM 54 H H61 U6C . . . C 2 -58.36 -17.2 -3.786 1 121.4 ? H61 U6C 201 A 1 HETATM 55 H H60 U6C . . . C 2 -58.95 -15.528 -3.666 1 121.4 ? H60 U6C 201 A 1 HETATM 56 H H34 U6C . . . C 2 -51.771 -15.02 4.236 1 50.09 ? H34 U6C 201 A 1 HETATM 57 H H35 U6C . . . C 2 -50.498 -14.347 2.229 1 57 ? H35 U6C 201 A 1 HETATM 58 H H37 U6C . . . C 2 -55.264 -16.456 -0.737 1 71.46 ? H37 U6C 201 A 1 HETATM 59 H H41 U6C . . . C 2 -55.234 -12.671 6.641 1 48.31 ? H41 U6C 201 A 1 HETATM 60 H H36 U6C . . . C 2 -50.535 -14.878 -0.637 1 64 ? H36 U6C 201 A 1 HETATM 61 H H53 U6C . . . C 2 -56.3 -16.388 -4.629 1 123.72 ? H53 U6C 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 61 #