data_8DYJ
#
_model_server_result.job_id            POuU5PubcXsfeEMUqB2rag 
_model_server_result.datetime_utc      '2024-11-13 19:25:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dyj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    8DYJ 
#
_exptl.entry_id    8DYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DYJ 
_cell.length_a            61.025 
_cell.length_b            129.358 
_cell.length_c            188.422 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NE2 
_struct_conn.ptnr1_label_comp_id            HIS 
_struct_conn.ptnr1_label_seq_id             617 
_struct_conn.ptnr1_auth_asym_id             B 
_struct_conn.ptnr1_auth_comp_id             HIS 
_struct_conn.ptnr1_auth_seq_id              590 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            CO 
_struct_conn.ptnr2_label_comp_id            B12 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             B12 
_struct_conn.ptnr2_auth_seq_id              801 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.264 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8DYJ 
_atom_sites.fract_transf_matrix[1][1]    0.016387 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00773 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005307 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 B12 B 1 801 801 B12 B12 . 
C 3 ADP B 1 802 901 ADP ADP . 
D 4 HOH B 1 901 95 HOH HOH . 
D 4 HOH B 2 902 96 HOH HOH . 
D 4 HOH B 3 903 52 HOH HOH . 
D 4 HOH B 4 904 126 HOH HOH . 
D 4 HOH B 5 905 11 HOH HOH . 
D 4 HOH B 6 906 1 HOH HOH . 
D 4 HOH B 7 907 79 HOH HOH . 
D 4 HOH B 8 908 23 HOH HOH . 
D 4 HOH B 9 909 107 HOH HOH . 
D 4 HOH B 10 910 72 HOH HOH . 
D 4 HOH B 11 911 71 HOH HOH . 
D 4 HOH B 12 912 65 HOH HOH . 
D 4 HOH B 13 913 17 HOH HOH . 
D 4 HOH B 14 914 18 HOH HOH . 
D 4 HOH B 15 915 16 HOH HOH . 
D 4 HOH B 16 916 78 HOH HOH . 
D 4 HOH B 17 917 20 HOH HOH . 
D 4 HOH B 18 918 60 HOH HOH . 
D 4 HOH B 19 919 109 HOH HOH . 
D 4 HOH B 20 920 40 HOH HOH . 
D 4 HOH B 21 921 54 HOH HOH . 
D 4 HOH B 22 922 13 HOH HOH . 
D 4 HOH B 23 923 45 HOH HOH . 
D 4 HOH B 24 924 114 HOH HOH . 
D 4 HOH B 25 925 108 HOH HOH . 
D 4 HOH B 26 926 35 HOH HOH . 
D 4 HOH B 27 927 68 HOH HOH . 
D 4 HOH B 28 928 82 HOH HOH . 
D 4 HOH B 29 929 21 HOH HOH . 
D 4 HOH B 30 930 87 HOH HOH . 
D 4 HOH B 31 931 100 HOH HOH . 
D 4 HOH B 32 932 36 HOH HOH . 
D 4 HOH B 33 933 62 HOH HOH . 
D 4 HOH B 34 934 122 HOH HOH . 
D 4 HOH B 35 935 84 HOH HOH . 
D 4 HOH B 36 936 7 HOH HOH . 
D 4 HOH B 37 937 43 HOH HOH . 
D 4 HOH B 38 938 61 HOH HOH . 
D 4 HOH B 39 939 67 HOH HOH . 
D 4 HOH B 40 940 29 HOH HOH . 
D 4 HOH B 41 941 91 HOH HOH . 
D 4 HOH B 42 942 104 HOH HOH . 
D 4 HOH B 43 943 49 HOH HOH . 
D 4 HOH B 44 944 116 HOH HOH . 
D 4 HOH B 45 945 86 HOH HOH . 
D 4 HOH B 46 946 81 HOH HOH . 
D 4 HOH B 47 947 118 HOH HOH . 
D 4 HOH B 48 948 14 HOH HOH . 
D 4 HOH B 49 949 5 HOH HOH . 
D 4 HOH B 50 950 8 HOH HOH . 
D 4 HOH B 51 951 12 HOH HOH . 
D 4 HOH B 52 952 89 HOH HOH . 
D 4 HOH B 53 953 115 HOH HOH . 
D 4 HOH B 54 954 10 HOH HOH . 
D 4 HOH B 55 955 4 HOH HOH . 
D 4 HOH B 56 956 48 HOH HOH . 
D 4 HOH B 57 957 27 HOH HOH . 
D 4 HOH B 58 958 28 HOH HOH . 
D 4 HOH B 59 959 25 HOH HOH . 
D 4 HOH B 60 960 51 HOH HOH . 
D 4 HOH B 61 961 73 HOH HOH . 
D 4 HOH B 62 962 33 HOH HOH . 
D 4 HOH B 63 963 106 HOH HOH . 
D 4 HOH B 64 964 66 HOH HOH . 
D 4 HOH B 65 965 6 HOH HOH . 
D 4 HOH B 66 966 37 HOH HOH . 
D 4 HOH B 67 967 39 HOH HOH . 
D 4 HOH B 68 968 123 HOH HOH . 
D 4 HOH B 69 969 22 HOH HOH . 
D 4 HOH B 70 970 24 HOH HOH . 
D 4 HOH B 71 971 46 HOH HOH . 
D 4 HOH B 72 972 31 HOH HOH . 
D 4 HOH B 73 973 53 HOH HOH . 
D 4 HOH B 74 974 41 HOH HOH . 
D 4 HOH B 75 975 9 HOH HOH . 
D 4 HOH B 76 976 74 HOH HOH . 
D 4 HOH B 77 977 119 HOH HOH . 
D 4 HOH B 78 978 26 HOH HOH . 
D 4 HOH B 79 979 88 HOH HOH . 
D 4 HOH B 80 980 2 HOH HOH . 
D 4 HOH B 81 981 80 HOH HOH . 
D 4 HOH B 82 982 58 HOH HOH . 
D 4 HOH B 83 983 90 HOH HOH . 
D 4 HOH B 84 984 3 HOH HOH . 
D 4 HOH B 85 985 50 HOH HOH . 
D 4 HOH B 86 986 47 HOH HOH . 
D 4 HOH B 87 987 44 HOH HOH . 
D 4 HOH B 88 988 99 HOH HOH . 
D 4 HOH B 89 989 69 HOH HOH . 
D 4 HOH B 90 990 113 HOH HOH . 
D 4 HOH B 91 991 105 HOH HOH . 
D 4 HOH B 92 992 94 HOH HOH . 
D 4 HOH B 93 993 112 HOH HOH . 
D 4 HOH B 94 994 30 HOH HOH . 
D 4 HOH B 95 995 32 HOH HOH . 
D 4 HOH B 96 996 125 HOH HOH . 
D 4 HOH B 97 997 102 HOH HOH . 
D 4 HOH B 98 998 110 HOH HOH . 
D 4 HOH B 99 999 85 HOH HOH . 
D 4 HOH B 100 1000 83 HOH HOH . 
D 4 HOH B 101 1001 70 HOH HOH . 
D 4 HOH B 102 1002 56 HOH HOH . 
D 4 HOH B 103 1003 55 HOH HOH . 
D 4 HOH B 104 1004 76 HOH HOH . 
D 4 HOH B 105 1005 111 HOH HOH . 
D 4 HOH B 106 1006 57 HOH HOH . 
D 4 HOH B 107 1007 101 HOH HOH . 
D 4 HOH B 108 1008 64 HOH HOH . 
D 4 HOH B 109 1009 63 HOH HOH . 
D 4 HOH B 110 1010 120 HOH HOH . 
D 4 HOH B 111 1011 124 HOH HOH . 
D 4 HOH B 112 1012 15 HOH HOH . 
D 4 HOH B 113 1013 59 HOH HOH . 
D 4 HOH B 114 1014 92 HOH HOH . 
D 4 HOH B 115 1015 75 HOH HOH . 
D 4 HOH B 116 1016 121 HOH HOH . 
D 4 HOH B 117 1017 97 HOH HOH . 
D 4 HOH B 118 1018 103 HOH HOH . 
D 4 HOH B 119 1019 42 HOH HOH . 
D 4 HOH B 120 1020 77 HOH HOH . 
D 4 HOH B 121 1021 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 20.2 12.141 18.112 1 65.9 ? PB ADP 802 B 1 
HETATM 2 O O1B ADP . . . C 3 20.252 13.346 17.173 1 63.92 ? O1B ADP 802 B 1 
HETATM 3 O O2B ADP . . . C 3 19.719 10.803 17.666 1 68.85 ? O2B ADP 802 B 1 
HETATM 4 O O3B ADP . . . C 3 19.839 12.492 19.539 1 63.32 ? O3B ADP 802 B 1 
HETATM 5 P PA ADP . . . C 3 22.125 10.841 19.639 1 61.19 ? PA ADP 802 B 1 
HETATM 6 O O1A ADP . . . C 3 23.488 10.898 20.344 1 62.59 ? O1A ADP 802 B 1 
HETATM 7 O O2A ADP . . . C 3 20.931 10.468 20.404 1 61.37 ? O2A ADP 802 B 1 
HETATM 8 O O3A ADP . . . C 3 21.968 11.724 18.371 1 66.01 ? O3A ADP 802 B 1 
HETATM 9 O O5' ADP . . . C 3 22.265 9.115 18.997 1 62.96 ? O5' ADP 802 B 1 
HETATM 10 C C5' ADP . . . C 3 23.552 8.935 18.592 1 60.12 ? C5' ADP 802 B 1 
HETATM 11 C C4' ADP . . . C 3 23.455 8.223 17.246 1 57.83 ? C4' ADP 802 B 1 
HETATM 12 O O4' ADP . . . C 3 23.609 9.221 16.204 1 58.14 ? O4' ADP 802 B 1 
HETATM 13 C C3' ADP . . . C 3 24.612 7.207 17.053 1 58.26 ? C3' ADP 802 B 1 
HETATM 14 O O3' ADP . . . C 3 24.129 5.919 17.29 1 59.38 ? O3' ADP 802 B 1 
HETATM 15 C C2' ADP . . . C 3 25.029 7.379 15.604 1 59.41 ? C2' ADP 802 B 1 
HETATM 16 O O2' ADP . . . C 3 24.217 6.662 14.72 1 56.99 ? O2' ADP 802 B 1 
HETATM 17 C C1' ADP . . . C 3 24.734 8.889 15.389 1 58.82 ? C1' ADP 802 B 1 
HETATM 18 N N9 ADP . . . C 3 25.895 9.716 15.841 1 61.86 ? N9 ADP 802 B 1 
HETATM 19 C C8 ADP . . . C 3 26.453 9.867 17.115 1 64.56 ? C8 ADP 802 B 1 
HETATM 20 N N7 ADP . . . C 3 27.491 10.699 17.149 1 65.13 ? N7 ADP 802 B 1 
HETATM 21 C C5 ADP . . . C 3 27.616 11.117 15.821 1 65.04 ? C5 ADP 802 B 1 
HETATM 22 C C6 ADP . . . C 3 28.521 11.997 15.203 1 63.99 ? C6 ADP 802 B 1 
HETATM 23 N N6 ADP . . . C 3 29.495 12.61 15.937 1 62.05 ? N6 ADP 802 B 1 
HETATM 24 N N1 ADP . . . C 3 28.439 12.251 13.862 1 63.59 ? N1 ADP 802 B 1 
HETATM 25 C C2 ADP . . . C 3 27.437 11.595 13.204 1 65.11 ? C2 ADP 802 B 1 
HETATM 26 N N3 ADP . . . C 3 26.501 10.736 13.641 1 65.26 ? N3 ADP 802 B 1 
HETATM 27 C C4 ADP . . . C 3 26.623 10.507 14.994 1 64.97 ? C4 ADP 802 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           243 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           380 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#