data_8DYL # _model_server_result.job_id cmULGmabxV-x8YZbd3QoOg _model_server_result.datetime_utc '2024-11-18 08:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 8DYL # _exptl.entry_id 8DYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DYL _cell.length_a 59.377 _cell.length_b 136.07 _cell.length_c 196.015 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 617 B HIS 627 1_555 B CO B12 . B B12 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 B CO B12 . B B12 801 1_555 I O HOH . B HOH 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 319 n n C1 C2 GOL sing 320 n n C1 H11 GOL sing 321 n n C1 H12 GOL sing 322 n n O1 HO1 GOL sing 323 n n C2 O2 GOL sing 324 n n C2 C3 GOL sing 325 n n C2 H2 GOL sing 326 n n O2 HO2 GOL sing 327 n n C3 O3 GOL sing 328 n n C3 H31 GOL sing 329 n n C3 H32 GOL sing 330 n n O3 HO3 GOL sing 331 n n # _atom_sites.entry_id 8DYL _atom_sites.fract_transf_matrix[1][1] 0.016842 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B12 B 1 801 801 B12 B12 . C 3 GOL B 1 802 1001 GOL GOL . D 3 GOL B 1 803 1101 GOL GOL . E 3 GOL B 1 804 1201 GOL GOL . F 3 GOL B 1 805 1301 GOL GOL . G 3 GOL B 1 806 1401 GOL GOL . H 3 GOL B 1 807 1501 GOL GOL . I 4 HOH B 1 901 205 HOH HOH . I 4 HOH B 2 902 153 HOH HOH . I 4 HOH B 3 903 222 HOH HOH . I 4 HOH B 4 904 169 HOH HOH . I 4 HOH B 5 905 187 HOH HOH . I 4 HOH B 6 906 185 HOH HOH . I 4 HOH B 7 907 232 HOH HOH . I 4 HOH B 8 908 60 HOH HOH . I 4 HOH B 9 909 172 HOH HOH . I 4 HOH B 10 910 173 HOH HOH . I 4 HOH B 11 911 121 HOH HOH . I 4 HOH B 12 912 249 HOH HOH . I 4 HOH B 13 913 253 HOH HOH . I 4 HOH B 14 914 147 HOH HOH . I 4 HOH B 15 915 151 HOH HOH . I 4 HOH B 16 916 36 HOH HOH . I 4 HOH B 17 917 264 HOH HOH . I 4 HOH B 18 918 54 HOH HOH . I 4 HOH B 19 919 168 HOH HOH . I 4 HOH B 20 920 194 HOH HOH . I 4 HOH B 21 921 254 HOH HOH . I 4 HOH B 22 922 237 HOH HOH . I 4 HOH B 23 923 74 HOH HOH . I 4 HOH B 24 924 262 HOH HOH . I 4 HOH B 25 925 69 HOH HOH . I 4 HOH B 26 926 228 HOH HOH . I 4 HOH B 27 927 5 HOH HOH . I 4 HOH B 28 928 115 HOH HOH . I 4 HOH B 29 929 30 HOH HOH . I 4 HOH B 30 930 15 HOH HOH . I 4 HOH B 31 931 97 HOH HOH . I 4 HOH B 32 932 55 HOH HOH . I 4 HOH B 33 933 179 HOH HOH . I 4 HOH B 34 934 80 HOH HOH . I 4 HOH B 35 935 47 HOH HOH . I 4 HOH B 36 936 61 HOH HOH . I 4 HOH B 37 937 206 HOH HOH . I 4 HOH B 38 938 227 HOH HOH . I 4 HOH B 39 939 12 HOH HOH . I 4 HOH B 40 940 246 HOH HOH . I 4 HOH B 41 941 33 HOH HOH . I 4 HOH B 42 942 123 HOH HOH . I 4 HOH B 43 943 132 HOH HOH . I 4 HOH B 44 944 134 HOH HOH . I 4 HOH B 45 945 67 HOH HOH . I 4 HOH B 46 946 71 HOH HOH . I 4 HOH B 47 947 207 HOH HOH . I 4 HOH B 48 948 102 HOH HOH . I 4 HOH B 49 949 78 HOH HOH . I 4 HOH B 50 950 118 HOH HOH . I 4 HOH B 51 951 107 HOH HOH . I 4 HOH B 52 952 94 HOH HOH . I 4 HOH B 53 953 174 HOH HOH . I 4 HOH B 54 954 93 HOH HOH . I 4 HOH B 55 955 167 HOH HOH . I 4 HOH B 56 956 230 HOH HOH . I 4 HOH B 57 957 11 HOH HOH . I 4 HOH B 58 958 101 HOH HOH . I 4 HOH B 59 959 52 HOH HOH . I 4 HOH B 60 960 256 HOH HOH . I 4 HOH B 61 961 201 HOH HOH . I 4 HOH B 62 962 112 HOH HOH . I 4 HOH B 63 963 178 HOH HOH . I 4 HOH B 64 964 170 HOH HOH . I 4 HOH B 65 965 140 HOH HOH . I 4 HOH B 66 966 89 HOH HOH . I 4 HOH B 67 967 229 HOH HOH . I 4 HOH B 68 968 156 HOH HOH . I 4 HOH B 69 969 248 HOH HOH . I 4 HOH B 70 970 27 HOH HOH . I 4 HOH B 71 971 77 HOH HOH . I 4 HOH B 72 972 241 HOH HOH . I 4 HOH B 73 973 150 HOH HOH . I 4 HOH B 74 974 155 HOH HOH . I 4 HOH B 75 975 165 HOH HOH . I 4 HOH B 76 976 135 HOH HOH . I 4 HOH B 77 977 84 HOH HOH . I 4 HOH B 78 978 244 HOH HOH . I 4 HOH B 79 979 226 HOH HOH . I 4 HOH B 80 980 68 HOH HOH . I 4 HOH B 81 981 114 HOH HOH . I 4 HOH B 82 982 148 HOH HOH . I 4 HOH B 83 983 17 HOH HOH . I 4 HOH B 84 984 98 HOH HOH . I 4 HOH B 85 985 221 HOH HOH . I 4 HOH B 86 986 223 HOH HOH . I 4 HOH B 87 987 7 HOH HOH . I 4 HOH B 88 988 234 HOH HOH . I 4 HOH B 89 989 34 HOH HOH . I 4 HOH B 90 990 57 HOH HOH . I 4 HOH B 91 991 144 HOH HOH . I 4 HOH B 92 992 66 HOH HOH . I 4 HOH B 93 993 26 HOH HOH . I 4 HOH B 94 994 42 HOH HOH . I 4 HOH B 95 995 28 HOH HOH . I 4 HOH B 96 996 40 HOH HOH . I 4 HOH B 97 997 104 HOH HOH . I 4 HOH B 98 998 211 HOH HOH . I 4 HOH B 99 999 92 HOH HOH . I 4 HOH B 100 1000 35 HOH HOH . I 4 HOH B 101 1001 110 HOH HOH . I 4 HOH B 102 1002 87 HOH HOH . I 4 HOH B 103 1003 86 HOH HOH . I 4 HOH B 104 1004 48 HOH HOH . I 4 HOH B 105 1005 175 HOH HOH . I 4 HOH B 106 1006 255 HOH HOH . I 4 HOH B 107 1007 109 HOH HOH . I 4 HOH B 108 1008 70 HOH HOH . I 4 HOH B 109 1009 219 HOH HOH . I 4 HOH B 110 1010 41 HOH HOH . I 4 HOH B 111 1011 161 HOH HOH . I 4 HOH B 112 1012 133 HOH HOH . I 4 HOH B 113 1013 25 HOH HOH . I 4 HOH B 114 1014 183 HOH HOH . I 4 HOH B 115 1015 22 HOH HOH . I 4 HOH B 116 1016 58 HOH HOH . I 4 HOH B 117 1017 184 HOH HOH . I 4 HOH B 118 1018 243 HOH HOH . I 4 HOH B 119 1019 81 HOH HOH . I 4 HOH B 120 1020 50 HOH HOH . I 4 HOH B 121 1021 103 HOH HOH . I 4 HOH B 122 1022 186 HOH HOH . I 4 HOH B 123 1023 236 HOH HOH . I 4 HOH B 124 1024 31 HOH HOH . I 4 HOH B 125 1025 75 HOH HOH . I 4 HOH B 126 1026 29 HOH HOH . I 4 HOH B 127 1027 111 HOH HOH . I 4 HOH B 128 1028 196 HOH HOH . I 4 HOH B 129 1029 46 HOH HOH . I 4 HOH B 130 1030 198 HOH HOH . I 4 HOH B 131 1031 122 HOH HOH . I 4 HOH B 132 1032 2 HOH HOH . I 4 HOH B 133 1033 217 HOH HOH . I 4 HOH B 134 1034 13 HOH HOH . I 4 HOH B 135 1035 73 HOH HOH . I 4 HOH B 136 1036 131 HOH HOH . I 4 HOH B 137 1037 37 HOH HOH . I 4 HOH B 138 1038 44 HOH HOH . I 4 HOH B 139 1039 51 HOH HOH . I 4 HOH B 140 1040 263 HOH HOH . I 4 HOH B 141 1041 19 HOH HOH . I 4 HOH B 142 1042 182 HOH HOH . I 4 HOH B 143 1043 56 HOH HOH . I 4 HOH B 144 1044 76 HOH HOH . I 4 HOH B 145 1045 130 HOH HOH . I 4 HOH B 146 1046 197 HOH HOH . I 4 HOH B 147 1047 138 HOH HOH . I 4 HOH B 148 1048 16 HOH HOH . I 4 HOH B 149 1049 9 HOH HOH . I 4 HOH B 150 1050 137 HOH HOH . I 4 HOH B 151 1051 119 HOH HOH . I 4 HOH B 152 1052 160 HOH HOH . I 4 HOH B 153 1053 163 HOH HOH . I 4 HOH B 154 1054 157 HOH HOH . I 4 HOH B 155 1055 177 HOH HOH . I 4 HOH B 156 1056 240 HOH HOH . I 4 HOH B 157 1057 162 HOH HOH . I 4 HOH B 158 1058 146 HOH HOH . I 4 HOH B 159 1059 181 HOH HOH . I 4 HOH B 160 1060 149 HOH HOH . I 4 HOH B 161 1061 18 HOH HOH . I 4 HOH B 162 1062 39 HOH HOH . I 4 HOH B 163 1063 250 HOH HOH . I 4 HOH B 164 1064 20 HOH HOH . I 4 HOH B 165 1065 210 HOH HOH . I 4 HOH B 166 1066 49 HOH HOH . I 4 HOH B 167 1067 200 HOH HOH . I 4 HOH B 168 1068 142 HOH HOH . I 4 HOH B 169 1069 72 HOH HOH . I 4 HOH B 170 1070 136 HOH HOH . I 4 HOH B 171 1071 83 HOH HOH . I 4 HOH B 172 1072 212 HOH HOH . I 4 HOH B 173 1073 220 HOH HOH . I 4 HOH B 174 1074 85 HOH HOH . I 4 HOH B 175 1075 10 HOH HOH . I 4 HOH B 176 1076 59 HOH HOH . I 4 HOH B 177 1077 79 HOH HOH . I 4 HOH B 178 1078 21 HOH HOH . I 4 HOH B 179 1079 257 HOH HOH . I 4 HOH B 180 1080 252 HOH HOH . I 4 HOH B 181 1081 53 HOH HOH . I 4 HOH B 182 1082 23 HOH HOH . I 4 HOH B 183 1083 99 HOH HOH . I 4 HOH B 184 1084 91 HOH HOH . I 4 HOH B 185 1085 141 HOH HOH . I 4 HOH B 186 1086 108 HOH HOH . I 4 HOH B 187 1087 95 HOH HOH . I 4 HOH B 188 1088 193 HOH HOH . I 4 HOH B 189 1089 216 HOH HOH . I 4 HOH B 190 1090 100 HOH HOH . I 4 HOH B 191 1091 152 HOH HOH . I 4 HOH B 192 1092 32 HOH HOH . I 4 HOH B 193 1093 62 HOH HOH . I 4 HOH B 194 1094 233 HOH HOH . I 4 HOH B 195 1095 242 HOH HOH . I 4 HOH B 196 1096 8 HOH HOH . I 4 HOH B 197 1097 24 HOH HOH . I 4 HOH B 198 1098 143 HOH HOH . I 4 HOH B 199 1099 235 HOH HOH . I 4 HOH B 200 1100 154 HOH HOH . I 4 HOH B 201 1101 129 HOH HOH . I 4 HOH B 202 1102 224 HOH HOH . I 4 HOH B 203 1103 116 HOH HOH . I 4 HOH B 204 1104 105 HOH HOH . I 4 HOH B 205 1105 96 HOH HOH . I 4 HOH B 206 1106 245 HOH HOH . I 4 HOH B 207 1107 65 HOH HOH . I 4 HOH B 208 1108 176 HOH HOH . I 4 HOH B 209 1109 117 HOH HOH . I 4 HOH B 210 1110 171 HOH HOH . I 4 HOH B 211 1111 106 HOH HOH . I 4 HOH B 212 1112 139 HOH HOH . I 4 HOH B 213 1113 159 HOH HOH . I 4 HOH B 214 1114 189 HOH HOH . I 4 HOH B 215 1115 43 HOH HOH . I 4 HOH B 216 1116 45 HOH HOH . I 4 HOH B 217 1117 239 HOH HOH . I 4 HOH B 218 1118 218 HOH HOH . I 4 HOH B 219 1119 190 HOH HOH . I 4 HOH B 220 1120 202 HOH HOH . I 4 HOH B 221 1121 265 HOH HOH . I 4 HOH B 222 1122 203 HOH HOH . I 4 HOH B 223 1123 88 HOH HOH . I 4 HOH B 224 1124 125 HOH HOH . I 4 HOH B 225 1125 166 HOH HOH . I 4 HOH B 226 1126 120 HOH HOH . I 4 HOH B 227 1127 258 HOH HOH . I 4 HOH B 228 1128 180 HOH HOH . I 4 HOH B 229 1129 90 HOH HOH . I 4 HOH B 230 1130 192 HOH HOH . I 4 HOH B 231 1131 209 HOH HOH . I 4 HOH B 232 1132 113 HOH HOH . I 4 HOH B 233 1133 238 HOH HOH . I 4 HOH B 234 1134 128 HOH HOH . I 4 HOH B 235 1135 231 HOH HOH . I 4 HOH B 236 1136 259 HOH HOH . I 4 HOH B 237 1137 191 HOH HOH . I 4 HOH B 238 1138 145 HOH HOH . I 4 HOH B 239 1139 214 HOH HOH . I 4 HOH B 240 1140 158 HOH HOH . I 4 HOH B 241 1141 266 HOH HOH . I 4 HOH B 242 1142 204 HOH HOH . I 4 HOH B 243 1143 251 HOH HOH . I 4 HOH B 244 1144 213 HOH HOH . I 4 HOH B 245 1145 208 HOH HOH . I 4 HOH B 246 1146 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -22.618 7.323 13.615 1 42.93 ? C1 GOL 805 B 1 HETATM 2 O O1 GOL . . . F 3 -21.652 8.278 13.315 1 40.55 ? O1 GOL 805 B 1 HETATM 3 C C2 GOL . . . F 3 -21.83 6.051 13.919 1 46.37 ? C2 GOL 805 B 1 HETATM 4 O O2 GOL . . . F 3 -21.026 5.688 12.862 1 35.81 ? O2 GOL 805 B 1 HETATM 5 C C3 GOL . . . F 3 -22.882 4.997 14.476 1 45.44 ? C3 GOL 805 B 1 HETATM 6 O O3 GOL . . . F 3 -22.817 3.76 13.799 1 37.04 ? O3 GOL 805 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #