data_8DZ0 # _model_server_result.job_id dMtEei9ENliSKyi43AlrIA _model_server_result.datetime_utc '2024-11-16 10:40:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8DZ0 # _exptl.entry_id 8DZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DZ0 _cell.length_a 67.914 _cell.length_b 99.018 _cell.length_c 103.104 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 141 n n S C1 DMS sing 142 n n S C2 DMS sing 143 n n C1 H11 DMS sing 144 n n C1 H12 DMS sing 145 n n C1 H13 DMS sing 146 n n C2 H21 DMS sing 147 n n C2 H22 DMS sing 148 n n C2 H23 DMS sing 149 n n # _atom_sites.entry_id 8DZ0 _atom_sites.fract_transf_matrix[1][1] 0.014725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 401 401 DMS DMS . D 2 DMS A 1 402 601 DMS DMS . E 3 7YY A 1 403 602 7YY 7YY . F 2 DMS B 1 401 401 DMS DMS . G 3 7YY B 1 402 402 7YY 7YY . H 4 HOH A 1 501 21 HOH HOH . H 4 HOH A 2 502 41 HOH HOH . H 4 HOH A 3 503 17 HOH HOH . H 4 HOH A 4 504 31 HOH HOH . H 4 HOH A 5 505 30 HOH HOH . H 4 HOH A 6 506 23 HOH HOH . H 4 HOH A 7 507 26 HOH HOH . H 4 HOH A 8 508 20 HOH HOH . H 4 HOH A 9 509 36 HOH HOH . H 4 HOH A 10 510 27 HOH HOH . H 4 HOH A 11 511 5 HOH HOH . H 4 HOH A 12 512 34 HOH HOH . H 4 HOH A 13 513 12 HOH HOH . H 4 HOH A 14 514 18 HOH HOH . H 4 HOH A 15 515 35 HOH HOH . H 4 HOH A 16 516 19 HOH HOH . H 4 HOH A 17 517 11 HOH HOH . H 4 HOH A 18 518 22 HOH HOH . H 4 HOH A 19 519 13 HOH HOH . H 4 HOH A 20 520 1 HOH HOH . H 4 HOH A 21 521 15 HOH HOH . H 4 HOH A 22 522 10 HOH HOH . H 4 HOH A 23 523 44 HOH HOH . H 4 HOH A 24 524 33 HOH HOH . H 4 HOH A 25 525 16 HOH HOH . H 4 HOH A 26 526 4 HOH HOH . H 4 HOH A 27 527 43 HOH HOH . H 4 HOH A 28 528 9 HOH HOH . H 4 HOH A 29 529 32 HOH HOH . H 4 HOH A 30 530 8 HOH HOH . H 4 HOH A 31 531 2 HOH HOH . H 4 HOH A 32 532 29 HOH HOH . I 4 HOH B 1 501 40 HOH HOH . I 4 HOH B 2 502 38 HOH HOH . I 4 HOH B 3 503 6 HOH HOH . I 4 HOH B 4 504 3 HOH HOH . I 4 HOH B 5 505 24 HOH HOH . I 4 HOH B 6 506 25 HOH HOH . I 4 HOH B 7 507 28 HOH HOH . I 4 HOH B 8 508 7 HOH HOH . I 4 HOH B 9 509 42 HOH HOH . I 4 HOH B 10 510 14 HOH HOH . I 4 HOH B 11 511 37 HOH HOH . I 4 HOH B 12 512 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 2 -19.417 -21.251 24.785 1 70.44 ? S DMS 401 A 1 HETATM 2 O O DMS . . . C 2 -18.692 -19.967 25.034 1 47.69 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . C 2 -18.904 -21.942 23.187 1 49.38 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . C 2 -21.167 -20.908 24.446 1 49.04 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #