data_8DZ1
#
_model_server_result.job_id            ghhU360EuOKk7g1Le0OAXg 
_model_server_result.datetime_utc      '2024-11-16 10:35:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dz1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8DZ1 
#
_exptl.entry_id    8DZ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DZ1 
_cell.length_a            67.59 
_cell.length_b            99.066 
_cell.length_c            103.352 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DZ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 F N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 141 n n 
S C1 DMS sing 142 n n 
S C2 DMS sing 143 n n 
C1 H11 DMS sing 144 n n 
C1 H12 DMS sing 145 n n 
C1 H13 DMS sing 146 n n 
C2 H21 DMS sing 147 n n 
C2 H22 DMS sing 148 n n 
C2 H23 DMS sing 149 n n 
#
_atom_sites.entry_id                     8DZ1 
_atom_sites.fract_transf_matrix[1][1]    0.014795 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009676 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DMS A 1 401 401 DMS DMS . 
D 2 DMS A 1 402 601 DMS DMS . 
E 3 7YY A 1 403 602 7YY 7YY . 
F 2 DMS B 1 401 401 DMS DMS . 
G 3 7YY B 1 402 402 7YY 7YY . 
H 4 HOH A 1 501 38 HOH HOH . 
H 4 HOH A 2 502 62 HOH HOH . 
H 4 HOH A 3 503 34 HOH HOH . 
H 4 HOH A 4 504 60 HOH HOH . 
H 4 HOH A 5 505 50 HOH HOH . 
H 4 HOH A 6 506 64 HOH HOH . 
H 4 HOH A 7 507 57 HOH HOH . 
H 4 HOH A 8 508 24 HOH HOH . 
H 4 HOH A 9 509 18 HOH HOH . 
H 4 HOH A 10 510 12 HOH HOH . 
H 4 HOH A 11 511 11 HOH HOH . 
H 4 HOH A 12 512 37 HOH HOH . 
H 4 HOH A 13 513 6 HOH HOH . 
H 4 HOH A 14 514 41 HOH HOH . 
H 4 HOH A 15 515 43 HOH HOH . 
H 4 HOH A 16 516 16 HOH HOH . 
H 4 HOH A 17 517 47 HOH HOH . 
H 4 HOH A 18 518 17 HOH HOH . 
H 4 HOH A 19 519 48 HOH HOH . 
H 4 HOH A 20 520 19 HOH HOH . 
H 4 HOH A 21 521 58 HOH HOH . 
H 4 HOH A 22 522 5 HOH HOH . 
H 4 HOH A 23 523 14 HOH HOH . 
H 4 HOH A 24 524 21 HOH HOH . 
H 4 HOH A 25 525 82 HOH HOH . 
H 4 HOH A 26 526 26 HOH HOH . 
H 4 HOH A 27 527 25 HOH HOH . 
H 4 HOH A 28 528 46 HOH HOH . 
H 4 HOH A 29 529 32 HOH HOH . 
H 4 HOH A 30 530 4 HOH HOH . 
H 4 HOH A 31 531 61 HOH HOH . 
H 4 HOH A 32 532 70 HOH HOH . 
H 4 HOH A 33 533 29 HOH HOH . 
H 4 HOH A 34 534 23 HOH HOH . 
H 4 HOH A 35 535 59 HOH HOH . 
H 4 HOH A 36 536 73 HOH HOH . 
H 4 HOH A 37 537 31 HOH HOH . 
H 4 HOH A 38 538 75 HOH HOH . 
H 4 HOH A 39 539 44 HOH HOH . 
H 4 HOH A 40 540 13 HOH HOH . 
H 4 HOH A 41 541 27 HOH HOH . 
H 4 HOH A 42 542 67 HOH HOH . 
H 4 HOH A 43 543 55 HOH HOH . 
H 4 HOH A 44 544 68 HOH HOH . 
H 4 HOH A 45 545 3 HOH HOH . 
H 4 HOH A 46 546 40 HOH HOH . 
H 4 HOH A 47 547 22 HOH HOH . 
H 4 HOH A 48 548 1 HOH HOH . 
H 4 HOH A 49 549 45 HOH HOH . 
H 4 HOH A 50 550 28 HOH HOH . 
H 4 HOH A 51 551 52 HOH HOH . 
I 4 HOH B 1 501 42 HOH HOH . 
I 4 HOH B 2 502 56 HOH HOH . 
I 4 HOH B 3 503 53 HOH HOH . 
I 4 HOH B 4 504 35 HOH HOH . 
I 4 HOH B 5 505 54 HOH HOH . 
I 4 HOH B 6 506 36 HOH HOH . 
I 4 HOH B 7 507 2 HOH HOH . 
I 4 HOH B 8 508 9 HOH HOH . 
I 4 HOH B 9 509 74 HOH HOH . 
I 4 HOH B 10 510 20 HOH HOH . 
I 4 HOH B 11 511 69 HOH HOH . 
I 4 HOH B 12 512 71 HOH HOH . 
I 4 HOH B 13 513 77 HOH HOH . 
I 4 HOH B 14 514 10 HOH HOH . 
I 4 HOH B 15 515 63 HOH HOH . 
I 4 HOH B 16 516 30 HOH HOH . 
I 4 HOH B 17 517 39 HOH HOH . 
I 4 HOH B 18 518 76 HOH HOH . 
I 4 HOH B 19 519 15 HOH HOH . 
I 4 HOH B 20 520 7 HOH HOH . 
I 4 HOH B 21 521 66 HOH HOH . 
I 4 HOH B 22 522 72 HOH HOH . 
I 4 HOH B 23 523 78 HOH HOH . 
I 4 HOH B 24 524 51 HOH HOH . 
I 4 HOH B 25 525 8 HOH HOH . 
I 4 HOH B 26 526 33 HOH HOH . 
I 4 HOH B 27 527 81 HOH HOH . 
I 4 HOH B 28 528 49 HOH HOH . 
I 4 HOH B 29 529 65 HOH HOH . 
I 4 HOH B 30 530 80 HOH HOH . 
I 4 HOH B 31 531 79 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 2 -25.046 -8.104 37.769 1 57.07 ? S DMS 402 A 1 
HETATM 2 O O DMS . . . D 2 -26.414 -8.422 37.257 1 57.77 ? O DMS 402 A 1 
HETATM 3 C C1 DMS . . . D 2 -24.566 -9.327 39.023 1 61.12 ? C1 DMS 402 A 1 
HETATM 4 C C2 DMS . . . D 2 -25.13 -6.612 38.798 1 60.43 ? C2 DMS 402 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           4 
#