data_8DZ6 # _model_server_result.job_id GrGo6xKp3Jx87CQAgmYv4Q _model_server_result.datetime_utc '2024-11-16 10:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8DZ6 # _exptl.entry_id 8DZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DZ6 _cell.length_a 67.782 _cell.length_b 101.572 _cell.length_c 103.561 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C3 4WI . A 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 F C3 4WI . B 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 154 n n S C1 DMS sing 155 n n S C2 DMS sing 156 n n C1 H11 DMS sing 157 n n C1 H12 DMS sing 158 n n C1 H13 DMS sing 159 n n C2 H21 DMS sing 160 n n C2 H22 DMS sing 161 n n C2 H23 DMS sing 162 n n # _atom_sites.entry_id 8DZ6 _atom_sites.fract_transf_matrix[1][1] 0.014753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009656 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4WI A 1 401 401 4WI DRG . D 3 DMS A 1 402 402 DMS DMS . E 3 DMS A 1 403 403 DMS DMS . F 2 4WI B 1 401 401 4WI DRG . G 3 DMS B 1 402 402 DMS DMS . H 4 HOH A 1 501 4 HOH HOH . H 4 HOH A 2 502 76 HOH HOH . H 4 HOH A 3 503 5 HOH HOH . H 4 HOH A 4 504 34 HOH HOH . H 4 HOH A 5 505 29 HOH HOH . H 4 HOH A 6 506 36 HOH HOH . H 4 HOH A 7 507 42 HOH HOH . H 4 HOH A 8 508 69 HOH HOH . H 4 HOH A 9 509 32 HOH HOH . H 4 HOH A 10 510 15 HOH HOH . H 4 HOH A 11 511 13 HOH HOH . H 4 HOH A 12 512 25 HOH HOH . H 4 HOH A 13 513 28 HOH HOH . H 4 HOH A 14 514 27 HOH HOH . H 4 HOH A 15 515 39 HOH HOH . H 4 HOH A 16 516 67 HOH HOH . H 4 HOH A 17 517 19 HOH HOH . H 4 HOH A 18 518 41 HOH HOH . H 4 HOH A 19 519 11 HOH HOH . H 4 HOH A 20 520 22 HOH HOH . H 4 HOH A 21 521 6 HOH HOH . H 4 HOH A 22 522 48 HOH HOH . H 4 HOH A 23 523 20 HOH HOH . H 4 HOH A 24 524 50 HOH HOH . H 4 HOH A 25 525 14 HOH HOH . H 4 HOH A 26 526 3 HOH HOH . H 4 HOH A 27 527 10 HOH HOH . H 4 HOH A 28 528 38 HOH HOH . H 4 HOH A 29 529 37 HOH HOH . H 4 HOH A 30 530 16 HOH HOH . H 4 HOH A 31 531 52 HOH HOH . H 4 HOH A 32 532 49 HOH HOH . H 4 HOH A 33 533 1 HOH HOH . H 4 HOH A 34 534 70 HOH HOH . H 4 HOH A 35 535 46 HOH HOH . H 4 HOH A 36 536 54 HOH HOH . H 4 HOH A 37 537 74 HOH HOH . H 4 HOH A 38 538 72 HOH HOH . H 4 HOH A 39 539 53 HOH HOH . H 4 HOH A 40 540 73 HOH HOH . H 4 HOH A 41 541 62 HOH HOH . H 4 HOH A 42 542 75 HOH HOH . I 4 HOH B 1 501 17 HOH HOH . I 4 HOH B 2 502 35 HOH HOH . I 4 HOH B 3 503 21 HOH HOH . I 4 HOH B 4 504 31 HOH HOH . I 4 HOH B 5 505 24 HOH HOH . I 4 HOH B 6 506 8 HOH HOH . I 4 HOH B 7 507 26 HOH HOH . I 4 HOH B 8 508 68 HOH HOH . I 4 HOH B 9 509 30 HOH HOH . I 4 HOH B 10 510 2 HOH HOH . I 4 HOH B 11 511 71 HOH HOH . I 4 HOH B 12 512 51 HOH HOH . I 4 HOH B 13 513 65 HOH HOH . I 4 HOH B 14 514 45 HOH HOH . I 4 HOH B 15 515 44 HOH HOH . I 4 HOH B 16 516 9 HOH HOH . I 4 HOH B 17 517 55 HOH HOH . I 4 HOH B 18 518 40 HOH HOH . I 4 HOH B 19 519 18 HOH HOH . I 4 HOH B 20 520 43 HOH HOH . I 4 HOH B 21 521 57 HOH HOH . I 4 HOH B 22 522 33 HOH HOH . I 4 HOH B 23 523 12 HOH HOH . I 4 HOH B 24 524 56 HOH HOH . I 4 HOH B 25 525 61 HOH HOH . I 4 HOH B 26 526 64 HOH HOH . I 4 HOH B 27 527 23 HOH HOH . I 4 HOH B 28 528 58 HOH HOH . I 4 HOH B 29 529 59 HOH HOH . I 4 HOH B 30 530 60 HOH HOH . I 4 HOH B 31 531 7 HOH HOH . I 4 HOH B 32 532 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -21.757 -9.655 8.678 1 47.78 0 S DMS 402 A 1 HETATM 2 O O DMS . . . D 3 -20.36 -9.875 8.167 1 45.89 0 O DMS 402 A 1 HETATM 3 C C1 DMS . . . D 3 -21.942 -7.893 8.936 1 47.59 0 C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . D 3 -21.756 -10.198 10.369 1 45.78 0 C2 DMS 402 A 1 HETATM 5 H H11 DMS . . . D 3 -22.794 -7.717 9.359 1 47.45 0 H11 DMS 402 A 1 HETATM 6 H H12 DMS . . . D 3 -21.906 -7.439 8.082 1 47.45 0 H12 DMS 402 A 1 HETATM 7 H H13 DMS . . . D 3 -21.227 -7.572 9.501 1 47.4 0 H13 DMS 402 A 1 HETATM 8 H H21 DMS . . . D 3 -22.593 -9.948 10.786 1 45.86 0 H21 DMS 402 A 1 HETATM 9 H H22 DMS . . . D 3 -21.023 -9.783 10.843 1 45.96 0 H22 DMS 402 A 1 HETATM 10 H H23 DMS . . . D 3 -21.658 -11.16 10.398 1 45.96 0 H23 DMS 402 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #