data_8DZA
#
_model_server_result.job_id            iaFNSWYBv022sGh0AYoG1A 
_model_server_result.datetime_utc      '2024-11-21 08:38:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    8DZA 
#
_exptl.entry_id    8DZA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8DZA 
_cell.length_a            67.989 
_cell.length_b            99.979 
_cell.length_c            103.638 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 D C3 4WI . A 4WI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 H C3 4WI . B 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.783 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 154 n n 
S C1 DMS sing 155 n n 
S C2 DMS sing 156 n n 
C1 H11 DMS sing 157 n n 
C1 H12 DMS sing 158 n n 
C1 H13 DMS sing 159 n n 
C2 H21 DMS sing 160 n n 
C2 H22 DMS sing 161 n n 
C2 H23 DMS sing 162 n n 
#
_atom_sites.entry_id                     8DZA 
_atom_sites.fract_transf_matrix[1][1]    0.014708 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009649 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DMS A 1 401 401 DMS DMS . 
D 3 4WI A 1 402 402 4WI DRG . 
E 2 DMS A 1 403 403 DMS DMS . 
F 2 DMS A 1 404 404 DMS DMS . 
G 2 DMS A 1 405 405 DMS DMS . 
H 3 4WI B 1 401 401 4WI DRG . 
I 2 DMS B 1 402 402 DMS DMS . 
J 4 HOH A 1 501 110 HOH HOH . 
J 4 HOH A 2 502 117 HOH HOH . 
J 4 HOH A 3 503 79 HOH HOH . 
J 4 HOH A 4 504 25 HOH HOH . 
J 4 HOH A 5 505 116 HOH HOH . 
J 4 HOH A 6 506 129 HOH HOH . 
J 4 HOH A 7 507 17 HOH HOH . 
J 4 HOH A 8 508 63 HOH HOH . 
J 4 HOH A 9 509 109 HOH HOH . 
J 4 HOH A 10 510 143 HOH HOH . 
J 4 HOH A 11 511 118 HOH HOH . 
J 4 HOH A 12 512 99 HOH HOH . 
J 4 HOH A 13 513 78 HOH HOH . 
J 4 HOH A 14 514 125 HOH HOH . 
J 4 HOH A 15 515 81 HOH HOH . 
J 4 HOH A 16 516 65 HOH HOH . 
J 4 HOH A 17 517 91 HOH HOH . 
J 4 HOH A 18 518 89 HOH HOH . 
J 4 HOH A 19 519 43 HOH HOH . 
J 4 HOH A 20 520 22 HOH HOH . 
J 4 HOH A 21 521 119 HOH HOH . 
J 4 HOH A 22 522 44 HOH HOH . 
J 4 HOH A 23 523 20 HOH HOH . 
J 4 HOH A 24 524 141 HOH HOH . 
J 4 HOH A 25 525 107 HOH HOH . 
J 4 HOH A 26 526 16 HOH HOH . 
J 4 HOH A 27 527 66 HOH HOH . 
J 4 HOH A 28 528 58 HOH HOH . 
J 4 HOH A 29 529 18 HOH HOH . 
J 4 HOH A 30 530 33 HOH HOH . 
J 4 HOH A 31 531 38 HOH HOH . 
J 4 HOH A 32 532 48 HOH HOH . 
J 4 HOH A 33 533 145 HOH HOH . 
J 4 HOH A 34 534 3 HOH HOH . 
J 4 HOH A 35 535 87 HOH HOH . 
J 4 HOH A 36 536 60 HOH HOH . 
J 4 HOH A 37 537 70 HOH HOH . 
J 4 HOH A 38 538 35 HOH HOH . 
J 4 HOH A 39 539 39 HOH HOH . 
J 4 HOH A 40 540 73 HOH HOH . 
J 4 HOH A 41 541 104 HOH HOH . 
J 4 HOH A 42 542 98 HOH HOH . 
J 4 HOH A 43 543 134 HOH HOH . 
J 4 HOH A 44 544 6 HOH HOH . 
J 4 HOH A 45 545 4 HOH HOH . 
J 4 HOH A 46 546 77 HOH HOH . 
J 4 HOH A 47 547 97 HOH HOH . 
J 4 HOH A 48 548 151 HOH HOH . 
J 4 HOH A 49 549 37 HOH HOH . 
J 4 HOH A 50 550 36 HOH HOH . 
J 4 HOH A 51 551 84 HOH HOH . 
J 4 HOH A 52 552 61 HOH HOH . 
J 4 HOH A 53 553 21 HOH HOH . 
J 4 HOH A 54 554 13 HOH HOH . 
J 4 HOH A 55 555 62 HOH HOH . 
J 4 HOH A 56 556 45 HOH HOH . 
J 4 HOH A 57 557 67 HOH HOH . 
J 4 HOH A 58 558 19 HOH HOH . 
J 4 HOH A 59 559 12 HOH HOH . 
J 4 HOH A 60 560 76 HOH HOH . 
J 4 HOH A 61 561 42 HOH HOH . 
J 4 HOH A 62 562 52 HOH HOH . 
J 4 HOH A 63 563 93 HOH HOH . 
J 4 HOH A 64 564 153 HOH HOH . 
J 4 HOH A 65 565 53 HOH HOH . 
J 4 HOH A 66 566 9 HOH HOH . 
J 4 HOH A 67 567 103 HOH HOH . 
J 4 HOH A 68 568 130 HOH HOH . 
J 4 HOH A 69 569 11 HOH HOH . 
J 4 HOH A 70 570 27 HOH HOH . 
J 4 HOH A 71 571 31 HOH HOH . 
J 4 HOH A 72 572 15 HOH HOH . 
J 4 HOH A 73 573 121 HOH HOH . 
J 4 HOH A 74 574 100 HOH HOH . 
J 4 HOH A 75 575 2 HOH HOH . 
J 4 HOH A 76 576 106 HOH HOH . 
J 4 HOH A 77 577 137 HOH HOH . 
J 4 HOH A 78 578 86 HOH HOH . 
J 4 HOH A 79 579 113 HOH HOH . 
J 4 HOH A 80 580 136 HOH HOH . 
J 4 HOH A 81 581 46 HOH HOH . 
J 4 HOH A 82 582 138 HOH HOH . 
J 4 HOH A 83 583 147 HOH HOH . 
J 4 HOH A 84 584 47 HOH HOH . 
J 4 HOH A 85 585 72 HOH HOH . 
J 4 HOH A 86 586 135 HOH HOH . 
J 4 HOH A 87 587 152 HOH HOH . 
J 4 HOH A 88 588 124 HOH HOH . 
J 4 HOH A 89 589 142 HOH HOH . 
J 4 HOH A 90 590 112 HOH HOH . 
J 4 HOH A 91 591 166 HOH HOH . 
J 4 HOH A 92 592 96 HOH HOH . 
J 4 HOH A 93 593 165 HOH HOH . 
J 4 HOH A 94 594 127 HOH HOH . 
J 4 HOH A 95 595 105 HOH HOH . 
J 4 HOH A 96 596 88 HOH HOH . 
J 4 HOH A 97 597 169 HOH HOH . 
J 4 HOH A 98 598 159 HOH HOH . 
J 4 HOH A 99 599 83 HOH HOH . 
J 4 HOH A 100 600 115 HOH HOH . 
J 4 HOH A 101 601 90 HOH HOH . 
J 4 HOH A 102 602 164 HOH HOH . 
J 4 HOH A 103 603 144 HOH HOH . 
J 4 HOH A 104 604 139 HOH HOH . 
J 4 HOH A 105 605 173 HOH HOH . 
J 4 HOH A 106 606 172 HOH HOH . 
J 4 HOH A 107 607 140 HOH HOH . 
J 4 HOH A 108 608 114 HOH HOH . 
J 4 HOH A 109 609 168 HOH HOH . 
J 4 HOH A 110 610 174 HOH HOH . 
K 4 HOH B 1 501 108 HOH HOH . 
K 4 HOH B 2 502 102 HOH HOH . 
K 4 HOH B 3 503 10 HOH HOH . 
K 4 HOH B 4 504 49 HOH HOH . 
K 4 HOH B 5 505 94 HOH HOH . 
K 4 HOH B 6 506 14 HOH HOH . 
K 4 HOH B 7 507 69 HOH HOH . 
K 4 HOH B 8 508 30 HOH HOH . 
K 4 HOH B 9 509 148 HOH HOH . 
K 4 HOH B 10 510 126 HOH HOH . 
K 4 HOH B 11 511 101 HOH HOH . 
K 4 HOH B 12 512 40 HOH HOH . 
K 4 HOH B 13 513 157 HOH HOH . 
K 4 HOH B 14 514 120 HOH HOH . 
K 4 HOH B 15 515 32 HOH HOH . 
K 4 HOH B 16 516 75 HOH HOH . 
K 4 HOH B 17 517 59 HOH HOH . 
K 4 HOH B 18 518 41 HOH HOH . 
K 4 HOH B 19 519 24 HOH HOH . 
K 4 HOH B 20 520 133 HOH HOH . 
K 4 HOH B 21 521 7 HOH HOH . 
K 4 HOH B 22 522 23 HOH HOH . 
K 4 HOH B 23 523 55 HOH HOH . 
K 4 HOH B 24 524 56 HOH HOH . 
K 4 HOH B 25 525 132 HOH HOH . 
K 4 HOH B 26 526 28 HOH HOH . 
K 4 HOH B 27 527 85 HOH HOH . 
K 4 HOH B 28 528 57 HOH HOH . 
K 4 HOH B 29 529 74 HOH HOH . 
K 4 HOH B 30 530 5 HOH HOH . 
K 4 HOH B 31 531 8 HOH HOH . 
K 4 HOH B 32 532 92 HOH HOH . 
K 4 HOH B 33 533 68 HOH HOH . 
K 4 HOH B 34 534 154 HOH HOH . 
K 4 HOH B 35 535 26 HOH HOH . 
K 4 HOH B 36 536 50 HOH HOH . 
K 4 HOH B 37 537 54 HOH HOH . 
K 4 HOH B 38 538 34 HOH HOH . 
K 4 HOH B 39 539 156 HOH HOH . 
K 4 HOH B 40 540 111 HOH HOH . 
K 4 HOH B 41 541 51 HOH HOH . 
K 4 HOH B 42 542 155 HOH HOH . 
K 4 HOH B 43 543 150 HOH HOH . 
K 4 HOH B 44 544 167 HOH HOH . 
K 4 HOH B 45 545 71 HOH HOH . 
K 4 HOH B 46 546 64 HOH HOH . 
K 4 HOH B 47 547 146 HOH HOH . 
K 4 HOH B 48 548 1 HOH HOH . 
K 4 HOH B 49 549 122 HOH HOH . 
K 4 HOH B 50 550 170 HOH HOH . 
K 4 HOH B 51 551 163 HOH HOH . 
K 4 HOH B 52 552 149 HOH HOH . 
K 4 HOH B 53 553 175 HOH HOH . 
K 4 HOH B 54 554 158 HOH HOH . 
K 4 HOH B 55 555 160 HOH HOH . 
K 4 HOH B 56 556 80 HOH HOH . 
K 4 HOH B 57 557 123 HOH HOH . 
K 4 HOH B 58 558 162 HOH HOH . 
K 4 HOH B 59 559 82 HOH HOH . 
K 4 HOH B 60 560 95 HOH HOH . 
K 4 HOH B 61 561 128 HOH HOH . 
K 4 HOH B 62 562 29 HOH HOH . 
K 4 HOH B 63 563 131 HOH HOH . 
K 4 HOH B 64 564 171 HOH HOH . 
K 4 HOH B 65 565 161 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 2 0.402 -10.728 18.38 1 60.5 0 S DMS 403 A 1 
HETATM 2 O O DMS . . . E 2 -0.125 -11.725 17.381 1 49.93 0 O DMS 403 A 1 
HETATM 3 C C1 DMS . . . E 2 1.722 -11.527 19.259 1 58.5 0 C1 DMS 403 A 1 
HETATM 4 C C2 DMS . . . E 2 -0.772 -10.627 19.703 1 55.46 0 C2 DMS 403 A 1 
HETATM 5 H H11 DMS . . . E 2 2.094 -10.916 19.909 1 59.08 0 H11 DMS 403 A 1 
HETATM 6 H H12 DMS . . . E 2 2.411 -11.794 18.635 1 59.08 0 H12 DMS 403 A 1 
HETATM 7 H H13 DMS . . . E 2 1.377 -12.307 19.712 1 59.09 0 H13 DMS 403 A 1 
HETATM 8 H H21 DMS . . . E 2 -0.457 -9.995 20.363 1 56.8 0 H21 DMS 403 A 1 
HETATM 9 H H22 DMS . . . E 2 -0.873 -11.498 20.11 1 56.85 0 H22 DMS 403 A 1 
HETATM 10 H H23 DMS . . . E 2 -1.624 -10.332 19.354 1 56.85 0 H23 DMS 403 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#