data_8DZB
#
_model_server_result.job_id            mpT7XzdDopG7hTs2rFrOVg 
_model_server_result.datetime_utc      '2024-11-21 10:19:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8dzb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
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_entry.id    8DZB 
#
_exptl.entry_id    8DZB 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.23 
_cell.angle_gamma         90 
_cell.entry_id            8DZB 
_cell.length_a            45.78 
_cell.length_b            52.55 
_cell.length_c            113.537 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8DZB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             145 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              145 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C19 
_struct_conn.ptnr2_label_comp_id            U6Y 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             U6Y 
_struct_conn.ptnr2_auth_seq_id              502 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.738 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8DZB 
_atom_sites.fract_transf_matrix[1][1]    0.021844 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003943 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019029 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 501 GOL GOL . 
C 3 U6Y A 1 502 601 U6Y UNL . 
D 4 HOH A 1 601 10 HOH HOH . 
D 4 HOH A 2 602 57 HOH HOH . 
D 4 HOH A 3 603 31 HOH HOH . 
D 4 HOH A 4 604 72 HOH HOH . 
D 4 HOH A 5 605 52 HOH HOH . 
D 4 HOH A 6 606 16 HOH HOH . 
D 4 HOH A 7 607 51 HOH HOH . 
D 4 HOH A 8 608 83 HOH HOH . 
D 4 HOH A 9 609 4 HOH HOH . 
D 4 HOH A 10 610 8 HOH HOH . 
D 4 HOH A 11 611 13 HOH HOH . 
D 4 HOH A 12 612 71 HOH HOH . 
D 4 HOH A 13 613 21 HOH HOH . 
D 4 HOH A 14 614 86 HOH HOH . 
D 4 HOH A 15 615 7 HOH HOH . 
D 4 HOH A 16 616 6 HOH HOH . 
D 4 HOH A 17 617 26 HOH HOH . 
D 4 HOH A 18 618 12 HOH HOH . 
D 4 HOH A 19 619 25 HOH HOH . 
D 4 HOH A 20 620 34 HOH HOH . 
D 4 HOH A 21 621 58 HOH HOH . 
D 4 HOH A 22 622 75 HOH HOH . 
D 4 HOH A 23 623 50 HOH HOH . 
D 4 HOH A 24 624 3 HOH HOH . 
D 4 HOH A 25 625 5 HOH HOH . 
D 4 HOH A 26 626 39 HOH HOH . 
D 4 HOH A 27 627 66 HOH HOH . 
D 4 HOH A 28 628 1 HOH HOH . 
D 4 HOH A 29 629 81 HOH HOH . 
D 4 HOH A 30 630 30 HOH HOH . 
D 4 HOH A 31 631 67 HOH HOH . 
D 4 HOH A 32 632 59 HOH HOH . 
D 4 HOH A 33 633 49 HOH HOH . 
D 4 HOH A 34 634 2 HOH HOH . 
D 4 HOH A 35 635 35 HOH HOH . 
D 4 HOH A 36 636 27 HOH HOH . 
D 4 HOH A 37 637 69 HOH HOH . 
D 4 HOH A 38 638 62 HOH HOH . 
D 4 HOH A 39 639 37 HOH HOH . 
D 4 HOH A 40 640 74 HOH HOH . 
D 4 HOH A 41 641 28 HOH HOH . 
D 4 HOH A 42 642 55 HOH HOH . 
D 4 HOH A 43 643 80 HOH HOH . 
D 4 HOH A 44 644 68 HOH HOH . 
D 4 HOH A 45 645 32 HOH HOH . 
D 4 HOH A 46 646 43 HOH HOH . 
D 4 HOH A 47 647 54 HOH HOH . 
D 4 HOH A 48 648 20 HOH HOH . 
D 4 HOH A 49 649 15 HOH HOH . 
D 4 HOH A 50 650 22 HOH HOH . 
D 4 HOH A 51 651 17 HOH HOH . 
D 4 HOH A 52 652 18 HOH HOH . 
D 4 HOH A 53 653 23 HOH HOH . 
D 4 HOH A 54 654 53 HOH HOH . 
D 4 HOH A 55 655 46 HOH HOH . 
D 4 HOH A 56 656 84 HOH HOH . 
D 4 HOH A 57 657 70 HOH HOH . 
D 4 HOH A 58 658 9 HOH HOH . 
D 4 HOH A 59 659 42 HOH HOH . 
D 4 HOH A 60 660 29 HOH HOH . 
D 4 HOH A 61 661 78 HOH HOH . 
D 4 HOH A 62 662 40 HOH HOH . 
D 4 HOH A 63 663 14 HOH HOH . 
D 4 HOH A 64 664 36 HOH HOH . 
D 4 HOH A 65 665 79 HOH HOH . 
D 4 HOH A 66 666 82 HOH HOH . 
D 4 HOH A 67 667 73 HOH HOH . 
D 4 HOH A 68 668 11 HOH HOH . 
D 4 HOH A 69 669 38 HOH HOH . 
D 4 HOH A 70 670 44 HOH HOH . 
D 4 HOH A 71 671 60 HOH HOH . 
D 4 HOH A 72 672 76 HOH HOH . 
D 4 HOH A 73 673 65 HOH HOH . 
D 4 HOH A 74 674 63 HOH HOH . 
D 4 HOH A 75 675 45 HOH HOH . 
D 4 HOH A 76 676 64 HOH HOH . 
D 4 HOH A 77 677 19 HOH HOH . 
D 4 HOH A 78 678 85 HOH HOH . 
D 4 HOH A 79 679 41 HOH HOH . 
D 4 HOH A 80 680 77 HOH HOH . 
D 4 HOH A 81 681 61 HOH HOH . 
D 4 HOH A 82 682 56 HOH HOH . 
D 4 HOH A 83 683 33 HOH HOH . 
D 4 HOH A 84 684 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 9.775 -8.763 6.485 1 37.63 ? C1 GOL 501 A 1 
HETATM 2 O O1 GOL . . . B 2 10.466 -7.628 6.99 1 37.26 ? O1 GOL 501 A 1 
HETATM 3 C C2 GOL . . . B 2 10.047 -8.977 5.013 1 39.37 ? C2 GOL 501 A 1 
HETATM 4 O O2 GOL . . . B 2 9.245 -8.089 4.233 1 39.95 ? O2 GOL 501 A 1 
HETATM 5 C C3 GOL . . . B 2 9.809 -10.403 4.567 1 41.25 ? C3 GOL 501 A 1 
HETATM 6 O O3 GOL . . . B 2 11.014 -11.025 4.122 1 43.36 ? O3 GOL 501 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#