data_8DZR # _model_server_result.job_id bVa9RJUxHI-dowZAgxVTzw _model_server_result.datetime_utc '2024-12-26 15:02:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8dzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8DZR # _exptl.entry_id 8DZR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 414.326 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (3R)-4-[(3,4-dichlorophenyl)acetyl]-3-[(pyrrolidin-1-yl)methyl]piperazine-1-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8DZR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8DZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 131 1_555 A SG CYS 159 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 E SG CYS 159 E CYS 147 1_555 E SG CYS 229 E CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C19 H25 Cl2 N3 O3' _chem_comp.formula_weight 414.326 _chem_comp.id U9I _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (3R)-4-[(3,4-dichlorophenyl)acetyl]-3-[(pyrrolidin-1-yl)methyl]piperazine-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 U9I sing 356 n n C17 C18 U9I sing 357 n n C16 C15 U9I sing 358 n n C18 N3 U9I sing 359 n n C15 N3 U9I sing 360 n n N3 C14 U9I sing 361 n n C4 C3 U9I sing 362 n n C4 N2 U9I sing 363 n n C3 N1 U9I sing 364 n n CL2 C11 U9I sing 365 n n N2 C13 U9I sing 366 n n N2 C5 U9I sing 367 n n C19 N1 U9I sing 368 n n C19 C13 U9I sing 369 n n C14 C13 U9I sing 370 n n C6 C5 U9I sing 371 n n C6 C7 U9I sing 372 n n C12 C11 U9I doub 373 n y C12 C7 U9I sing 374 n y N1 C2 U9I sing 375 n n C5 O3 U9I doub 376 n n C11 C10 U9I sing 377 n y C7 C8 U9I doub 378 n y C2 O1 U9I sing 379 n n C2 O2 U9I doub 380 n n O1 C1 U9I sing 381 n n C10 C9 U9I doub 382 n y C10 CL1 U9I sing 383 n n C8 C9 U9I sing 384 n y C1 H2 U9I sing 385 n n C1 H3 U9I sing 386 n n C1 H1 U9I sing 387 n n C12 H12 U9I sing 388 n n C13 H13 U9I sing 389 n n C14 H15 U9I sing 390 n n C14 H14 U9I sing 391 n n C15 H16 U9I sing 392 n n C15 H17 U9I sing 393 n n C16 H19 U9I sing 394 n n C16 H18 U9I sing 395 n n C17 H20 U9I sing 396 n n C17 H21 U9I sing 397 n n C18 H22 U9I sing 398 n n C18 H23 U9I sing 399 n n C19 H24 U9I sing 400 n n C19 H25 U9I sing 401 n n C3 H4 U9I sing 402 n n C3 H5 U9I sing 403 n n C4 H6 U9I sing 404 n n C4 H7 U9I sing 405 n n C6 H8 U9I sing 406 n n C6 H9 U9I sing 407 n n C8 H10 U9I sing 408 n n C9 H11 U9I sing 409 n n # _atom_sites.entry_id 8DZR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id U9I _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id U9I _pdbx_nonpoly_scheme.auth_mon_id UNL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U9I . . . F 6 124.264 132.612 156.343 1 62.37 ? C1 U9I 401 A 1 HETATM 2 C C10 U9I . . . F 6 135.09 137.678 156.935 1 62.37 ? C10 U9I 401 A 1 HETATM 3 C C11 U9I . . . F 6 135.124 137.117 155.671 1 62.37 ? C11 U9I 401 A 1 HETATM 4 C C12 U9I . . . F 6 133.966 136.643 155.085 1 62.37 ? C12 U9I 401 A 1 HETATM 5 C C13 U9I . . . F 6 129.484 132.944 155.49 1 62.37 ? C13 U9I 401 A 1 HETATM 6 C C14 U9I . . . F 6 130.467 131.8 155.185 1 62.37 ? C14 U9I 401 A 1 HETATM 7 C C15 U9I . . . F 6 132.438 131.031 153.958 1 62.37 ? C15 U9I 401 A 1 HETATM 8 C C16 U9I . . . F 6 132.936 131.138 152.536 1 62.37 ? C16 U9I 401 A 1 HETATM 9 C C17 U9I . . . F 6 131.66 131.259 151.717 1 62.37 ? C17 U9I 401 A 1 HETATM 10 C C18 U9I . . . F 6 130.555 131.413 152.746 1 62.37 ? C18 U9I 401 A 1 HETATM 11 C C19 U9I . . . F 6 128.102 132.695 154.922 1 62.37 ? C19 U9I 401 A 1 HETATM 12 C C2 U9I . . . F 6 126.027 133.913 155.508 1 62.37 ? C2 U9I 401 A 1 HETATM 13 C C3 U9I . . . F 6 127.837 135.083 154.336 1 62.37 ? C3 U9I 401 A 1 HETATM 14 C C4 U9I . . . F 6 129.265 134.855 153.914 1 62.37 ? C4 U9I 401 A 1 HETATM 15 C C5 U9I . . . F 6 131.063 134.838 155.628 1 62.37 ? C5 U9I 401 A 1 HETATM 16 C C6 U9I . . . F 6 131.491 136.207 155.124 1 62.37 ? C6 U9I 401 A 1 HETATM 17 C C7 U9I . . . F 6 132.755 136.719 155.761 1 62.37 ? C7 U9I 401 A 1 HETATM 18 C C8 U9I . . . F 6 132.738 137.291 157.023 1 62.37 ? C8 U9I 401 A 1 HETATM 19 C C9 U9I . . . F 6 133.893 137.765 157.616 1 62.37 ? C9 U9I 401 A 1 HETATM 20 N N1 U9I . . . F 6 127.257 133.896 154.953 1 62.37 ? N1 U9I 401 A 1 HETATM 21 N N2 U9I . . . F 6 129.997 134.25 155.023 1 62.37 ? N2 U9I 401 A 1 HETATM 22 N N3 U9I . . . F 6 131.249 131.885 153.949 1 62.37 ? N3 U9I 401 A 1 HETATM 23 O O1 U9I . . . F 6 125.591 132.678 155.783 1 62.37 ? O1 U9I 401 A 1 HETATM 24 O O2 U9I . . . F 6 125.396 134.923 155.729 1 62.37 ? O2 U9I 401 A 1 HETATM 25 O O3 U9I . . . F 6 131.67 134.311 156.561 1 62.37 ? O3 U9I 401 A 1 HETATM 26 CL CL1 U9I . . . F 6 136.529 138.278 157.683 1 62.37 ? CL1 U9I 401 A 1 HETATM 27 CL CL2 U9I . . . F 6 136.612 136.997 154.798 1 62.37 ? CL2 U9I 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #