data_8E0C # _model_server_result.job_id 7SNhpULO1QrPUj71Vc9ANg _model_server_result.datetime_utc '2024-11-25 20:41:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8E0C # _exptl.entry_id 8E0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E0C _cell.length_a 40.652 _cell.length_b 52.525 _cell.length_c 81.405 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 62 A GLU 62 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc2 B O2G GTP . A GTP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc3 B O3B GTP . A GTP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc4 B O1A GTP . A GTP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc5 B O1G GTP . A GTP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc6 B O2G GTP . A GTP 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 8E0C _atom_sites.fract_transf_matrix[1][1] 0.024599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 201 1 GTP GTP . C 3 MG A 1 202 1 MG MG . D 3 MG A 1 203 2 MG MG . E 4 HOH A 1 301 30 HOH HOH . E 4 HOH A 2 302 114 HOH HOH . E 4 HOH A 3 303 104 HOH HOH . E 4 HOH A 4 304 38 HOH HOH . E 4 HOH A 5 305 95 HOH HOH . E 4 HOH A 6 306 99 HOH HOH . E 4 HOH A 7 307 79 HOH HOH . E 4 HOH A 8 308 44 HOH HOH . E 4 HOH A 9 309 10 HOH HOH . E 4 HOH A 10 310 96 HOH HOH . E 4 HOH A 11 311 59 HOH HOH . E 4 HOH A 12 312 56 HOH HOH . E 4 HOH A 13 313 20 HOH HOH . E 4 HOH A 14 314 60 HOH HOH . E 4 HOH A 15 315 5 HOH HOH . E 4 HOH A 16 316 62 HOH HOH . E 4 HOH A 17 317 39 HOH HOH . E 4 HOH A 18 318 3 HOH HOH . E 4 HOH A 19 319 107 HOH HOH . E 4 HOH A 20 320 2 HOH HOH . E 4 HOH A 21 321 120 HOH HOH . E 4 HOH A 22 322 55 HOH HOH . E 4 HOH A 23 323 61 HOH HOH . E 4 HOH A 24 324 125 HOH HOH . E 4 HOH A 25 325 22 HOH HOH . E 4 HOH A 26 326 4 HOH HOH . E 4 HOH A 27 327 49 HOH HOH . E 4 HOH A 28 328 40 HOH HOH . E 4 HOH A 29 329 35 HOH HOH . E 4 HOH A 30 330 71 HOH HOH . E 4 HOH A 31 331 85 HOH HOH . E 4 HOH A 32 332 128 HOH HOH . E 4 HOH A 33 333 17 HOH HOH . E 4 HOH A 34 334 72 HOH HOH . E 4 HOH A 35 335 32 HOH HOH . E 4 HOH A 36 336 23 HOH HOH . E 4 HOH A 37 337 15 HOH HOH . E 4 HOH A 38 338 37 HOH HOH . E 4 HOH A 39 339 24 HOH HOH . E 4 HOH A 40 340 57 HOH HOH . E 4 HOH A 41 341 43 HOH HOH . E 4 HOH A 42 342 1 HOH HOH . E 4 HOH A 43 343 129 HOH HOH . E 4 HOH A 44 344 8 HOH HOH . E 4 HOH A 45 345 42 HOH HOH . E 4 HOH A 46 346 6 HOH HOH . E 4 HOH A 47 347 34 HOH HOH . E 4 HOH A 48 348 53 HOH HOH . E 4 HOH A 49 349 9 HOH HOH . E 4 HOH A 50 350 50 HOH HOH . E 4 HOH A 51 351 68 HOH HOH . E 4 HOH A 52 352 100 HOH HOH . E 4 HOH A 53 353 45 HOH HOH . E 4 HOH A 54 354 108 HOH HOH . E 4 HOH A 55 355 63 HOH HOH . E 4 HOH A 56 356 90 HOH HOH . E 4 HOH A 57 357 31 HOH HOH . E 4 HOH A 58 358 41 HOH HOH . E 4 HOH A 59 359 18 HOH HOH . E 4 HOH A 60 360 28 HOH HOH . E 4 HOH A 61 361 73 HOH HOH . E 4 HOH A 62 362 82 HOH HOH . E 4 HOH A 63 363 80 HOH HOH . E 4 HOH A 64 364 27 HOH HOH . E 4 HOH A 65 365 91 HOH HOH . E 4 HOH A 66 366 75 HOH HOH . E 4 HOH A 67 367 74 HOH HOH . E 4 HOH A 68 368 84 HOH HOH . E 4 HOH A 69 369 33 HOH HOH . E 4 HOH A 70 370 118 HOH HOH . E 4 HOH A 71 371 29 HOH HOH . E 4 HOH A 72 372 106 HOH HOH . E 4 HOH A 73 373 26 HOH HOH . E 4 HOH A 74 374 87 HOH HOH . E 4 HOH A 75 375 12 HOH HOH . E 4 HOH A 76 376 48 HOH HOH . E 4 HOH A 77 377 7 HOH HOH . E 4 HOH A 78 378 46 HOH HOH . E 4 HOH A 79 379 25 HOH HOH . E 4 HOH A 80 380 81 HOH HOH . E 4 HOH A 81 381 64 HOH HOH . E 4 HOH A 82 382 97 HOH HOH . E 4 HOH A 83 383 121 HOH HOH . E 4 HOH A 84 384 110 HOH HOH . E 4 HOH A 85 385 36 HOH HOH . E 4 HOH A 86 386 119 HOH HOH . E 4 HOH A 87 387 67 HOH HOH . E 4 HOH A 88 388 16 HOH HOH . E 4 HOH A 89 389 93 HOH HOH . E 4 HOH A 90 390 13 HOH HOH . E 4 HOH A 91 391 11 HOH HOH . E 4 HOH A 92 392 19 HOH HOH . E 4 HOH A 93 393 54 HOH HOH . E 4 HOH A 94 394 111 HOH HOH . E 4 HOH A 95 395 51 HOH HOH . E 4 HOH A 96 396 52 HOH HOH . E 4 HOH A 97 397 124 HOH HOH . E 4 HOH A 98 398 98 HOH HOH . E 4 HOH A 99 399 78 HOH HOH . E 4 HOH A 100 400 83 HOH HOH . E 4 HOH A 101 401 69 HOH HOH . E 4 HOH A 102 402 116 HOH HOH . E 4 HOH A 103 403 92 HOH HOH . E 4 HOH A 104 404 101 HOH HOH . E 4 HOH A 105 405 103 HOH HOH . E 4 HOH A 106 406 102 HOH HOH . E 4 HOH A 107 407 115 HOH HOH . E 4 HOH A 108 408 126 HOH HOH . E 4 HOH A 109 409 127 HOH HOH . E 4 HOH A 110 410 70 HOH HOH . E 4 HOH A 111 411 122 HOH HOH . E 4 HOH A 112 412 94 HOH HOH . E 4 HOH A 113 413 117 HOH HOH . E 4 HOH A 114 414 77 HOH HOH . E 4 HOH A 115 415 89 HOH HOH . E 4 HOH A 116 416 76 HOH HOH . E 4 HOH A 117 417 14 HOH HOH . E 4 HOH A 118 418 65 HOH HOH . E 4 HOH A 119 419 47 HOH HOH . E 4 HOH A 120 420 105 HOH HOH . E 4 HOH A 121 421 58 HOH HOH . E 4 HOH A 122 422 88 HOH HOH . E 4 HOH A 123 423 123 HOH HOH . E 4 HOH A 124 424 112 HOH HOH . E 4 HOH A 125 425 66 HOH HOH . E 4 HOH A 126 426 21 HOH HOH . E 4 HOH A 127 427 86 HOH HOH . E 4 HOH A 128 428 113 HOH HOH . E 4 HOH A 129 429 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 173.425 43.86 88.031 1 33.05 ? PG GTP 201 A 1 HETATM 2 O O1G GTP . . . B 2 172.078 43.398 88.626 1 25.11 ? O1G GTP 201 A 1 HETATM 3 O O2G GTP . . . B 2 174.492 43.423 88.953 1 28.23 ? O2G GTP 201 A 1 HETATM 4 O O3G GTP . . . B 2 173.665 43.135 86.684 1 18.65 ? O3G GTP 201 A 1 HETATM 5 O O3B GTP . . . B 2 173.533 45.493 88.013 1 21.28 ? O3B GTP 201 A 1 HETATM 6 P PB GTP . . . B 2 173.566 46.383 86.718 1 17.53 ? PB GTP 201 A 1 HETATM 7 O O1B GTP . . . B 2 172.28 47.203 86.518 1 16.28 ? O1B GTP 201 A 1 HETATM 8 O O2B GTP . . . B 2 173.77 45.477 85.53 1 18.23 ? O2B GTP 201 A 1 HETATM 9 O O3A GTP . . . B 2 174.688 47.508 86.634 1 17.03 ? O3A GTP 201 A 1 HETATM 10 P PA GTP . . . B 2 176.059 47.64 87.398 1 19.82 ? PA GTP 201 A 1 HETATM 11 O O1A GTP . . . B 2 176.769 46.296 87.269 1 19.89 ? O1A GTP 201 A 1 HETATM 12 O O2A GTP . . . B 2 175.855 48.005 88.843 1 21.49 ? O2A GTP 201 A 1 HETATM 13 O O5' GTP . . . B 2 176.87 48.829 86.745 1 19.69 ? O5' GTP 201 A 1 HETATM 14 C C5' GTP . . . B 2 177.321 48.711 85.417 1 20.45 ? C5' GTP 201 A 1 HETATM 15 C C4' GTP . . . B 2 178.255 49.705 85.167 1 22.49 ? C4' GTP 201 A 1 HETATM 16 O O4' GTP . . . B 2 177.626 51.078 85.248 1 19.61 ? O4' GTP 201 A 1 HETATM 17 C C3' GTP . . . B 2 179.45 49.712 86.262 1 22.01 ? C3' GTP 201 A 1 HETATM 18 O O3' GTP . . . B 2 180.728 49.886 85.503 1 22.61 ? O3' GTP 201 A 1 HETATM 19 C C2' GTP . . . B 2 179.195 50.688 86.99 1 22.73 ? C2' GTP 201 A 1 HETATM 20 O O2' GTP . . . B 2 180.395 51.353 87.555 1 23.17 ? O2' GTP 201 A 1 HETATM 21 C C1' GTP . . . B 2 178.469 51.746 85.962 1 21.2 ? C1' GTP 201 A 1 HETATM 22 N N9 GTP . . . B 2 177.879 52.884 86.535 1 19.94 ? N9 GTP 201 A 1 HETATM 23 C C8 GTP . . . B 2 176.947 52.593 87.485 1 19.72 ? C8 GTP 201 A 1 HETATM 24 N N7 GTP . . . B 2 176.433 53.797 87.924 1 18.68 ? N7 GTP 201 A 1 HETATM 25 C C5 GTP . . . B 2 177.059 54.801 87.237 1 20.78 ? C5 GTP 201 A 1 HETATM 26 C C6 GTP . . . B 2 176.98 56.313 87.24 1 21.03 ? C6 GTP 201 A 1 HETATM 27 O O6 GTP . . . B 2 176.22 56.928 87.992 1 19.26 ? O6 GTP 201 A 1 HETATM 28 N N1 GTP . . . B 2 177.807 57.022 86.35 1 20.31 ? N1 GTP 201 A 1 HETATM 29 C C2 GTP . . . B 2 178.711 56.352 85.477 1 19.14 ? C2 GTP 201 A 1 HETATM 30 N N2 GTP . . . B 2 179.564 57.027 84.586 1 20.79 ? N2 GTP 201 A 1 HETATM 31 N N3 GTP . . . B 2 178.783 54.934 85.485 1 23.01 ? N3 GTP 201 A 1 HETATM 32 C C4 GTP . . . B 2 177.936 54.201 86.382 1 19.55 ? C4 GTP 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 32 #