data_8E0H # _model_server_result.job_id gtENxBllHszT4ZaAbjWCjA _model_server_result.datetime_utc '2024-11-01 03:37:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8E0H # _exptl.entry_id 8E0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 603.16 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5',3'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E0H _cell.length_a 44.534 _cell.length_b 61.082 _cell.length_c 133.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H17 N5 O17 P4' _chem_comp.formula_weight 603.16 _chem_comp.id G4P _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5',3'-TETRAPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms 'guanosine tetraphosphate;ppGpp' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B G4P doub 83 n n PB O2B G4P sing 84 n n PB O3B G4P sing 85 n n PB O3A G4P sing 86 n n O2B HOB2 G4P sing 87 n n O3B HOB3 G4P sing 88 n n O3A PA G4P sing 89 n n PA O1A G4P doub 90 n n PA O2A G4P sing 91 n n PA O5' G4P sing 92 n n O2A HOA2 G4P sing 93 n n O5' C5' G4P sing 94 n n C5' C4' G4P sing 95 n n C5' H5' G4P sing 96 n n C5' "H5''" G4P sing 97 n n C4' O4' G4P sing 98 n n C4' C3' G4P sing 99 n n C4' H4' G4P sing 100 n n O4' C1' G4P sing 101 n n C3' O3' G4P sing 102 n n C3' C2' G4P sing 103 n n C3' H3' G4P sing 104 n n O3' PC G4P sing 105 n n C2' O2' G4P sing 106 n n C2' C1' G4P sing 107 n n C2' H2' G4P sing 108 n n O2' HO2' G4P sing 109 n n C1' N9 G4P sing 110 n n C1' H1' G4P sing 111 n n N9 C8 G4P sing 112 n y N9 C4 G4P sing 113 n y C8 N7 G4P doub 114 n y C8 H8 G4P sing 115 n n N7 C5 G4P sing 116 n y C5 C6 G4P sing 117 n n C5 C4 G4P doub 118 n y C6 O6 G4P doub 119 n n C6 N1 G4P sing 120 n n N1 C2 G4P sing 121 n n N1 HN1 G4P sing 122 n n C2 N2 G4P sing 123 n n C2 N3 G4P doub 124 n n N2 HN21 G4P sing 125 n n N2 HN22 G4P sing 126 n n N3 C4 G4P sing 127 n n PC O1C G4P doub 128 n n PC O2C G4P sing 129 n n PC O3C G4P sing 130 n n O2C H2C G4P sing 131 n n O3C PD G4P sing 132 n n PD O1D G4P doub 133 n n PD O2D G4P sing 134 n n PD O3D G4P sing 135 n n O2D H2D G4P sing 136 n n O3D H3D G4P sing 137 n n # _atom_sites.entry_id 8E0H _atom_sites.fract_transf_matrix[1][1] 0.022455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G4P A 1 201 1 G4P G4P . D 2 G4P B 1 201 2 G4P G4P . E 3 HOH A 1 301 7 HOH HOH . E 3 HOH A 2 302 139 HOH HOH . E 3 HOH A 3 303 27 HOH HOH . E 3 HOH A 4 304 91 HOH HOH . E 3 HOH A 5 305 141 HOH HOH . E 3 HOH A 6 306 4 HOH HOH . E 3 HOH A 7 307 36 HOH HOH . E 3 HOH A 8 308 37 HOH HOH . E 3 HOH A 9 309 42 HOH HOH . E 3 HOH A 10 310 110 HOH HOH . E 3 HOH A 11 311 38 HOH HOH . E 3 HOH A 12 312 8 HOH HOH . E 3 HOH A 13 313 66 HOH HOH . E 3 HOH A 14 314 113 HOH HOH . E 3 HOH A 15 315 131 HOH HOH . E 3 HOH A 16 316 63 HOH HOH . E 3 HOH A 17 317 34 HOH HOH . E 3 HOH A 18 318 99 HOH HOH . E 3 HOH A 19 319 57 HOH HOH . E 3 HOH A 20 320 111 HOH HOH . E 3 HOH A 21 321 170 HOH HOH . E 3 HOH A 22 322 26 HOH HOH . E 3 HOH A 23 323 5 HOH HOH . E 3 HOH A 24 324 51 HOH HOH . E 3 HOH A 25 325 24 HOH HOH . E 3 HOH A 26 326 50 HOH HOH . E 3 HOH A 27 327 96 HOH HOH . E 3 HOH A 28 328 40 HOH HOH . E 3 HOH A 29 329 61 HOH HOH . E 3 HOH A 30 330 1 HOH HOH . E 3 HOH A 31 331 123 HOH HOH . E 3 HOH A 32 332 15 HOH HOH . E 3 HOH A 33 333 93 HOH HOH . E 3 HOH A 34 334 84 HOH HOH . E 3 HOH A 35 335 72 HOH HOH . E 3 HOH A 36 336 13 HOH HOH . E 3 HOH A 37 337 16 HOH HOH . E 3 HOH A 38 338 22 HOH HOH . E 3 HOH A 39 339 12 HOH HOH . E 3 HOH A 40 340 71 HOH HOH . E 3 HOH A 41 341 137 HOH HOH . E 3 HOH A 42 342 56 HOH HOH . E 3 HOH A 43 343 73 HOH HOH . E 3 HOH A 44 344 55 HOH HOH . E 3 HOH A 45 345 88 HOH HOH . E 3 HOH A 46 346 112 HOH HOH . E 3 HOH A 47 347 103 HOH HOH . E 3 HOH A 48 348 90 HOH HOH . E 3 HOH A 49 349 64 HOH HOH . E 3 HOH A 50 350 147 HOH HOH . E 3 HOH A 51 351 140 HOH HOH . E 3 HOH A 52 352 128 HOH HOH . E 3 HOH A 53 353 11 HOH HOH . E 3 HOH A 54 354 70 HOH HOH . E 3 HOH A 55 355 17 HOH HOH . E 3 HOH A 56 356 148 HOH HOH . E 3 HOH A 57 357 136 HOH HOH . E 3 HOH A 58 358 20 HOH HOH . E 3 HOH A 59 359 117 HOH HOH . E 3 HOH A 60 360 23 HOH HOH . E 3 HOH A 61 361 166 HOH HOH . E 3 HOH A 62 362 101 HOH HOH . E 3 HOH A 63 363 135 HOH HOH . E 3 HOH A 64 364 174 HOH HOH . E 3 HOH A 65 365 68 HOH HOH . E 3 HOH A 66 366 35 HOH HOH . E 3 HOH A 67 367 54 HOH HOH . E 3 HOH A 68 368 121 HOH HOH . E 3 HOH A 69 369 132 HOH HOH . E 3 HOH A 70 370 169 HOH HOH . E 3 HOH A 71 371 138 HOH HOH . E 3 HOH A 72 372 48 HOH HOH . E 3 HOH A 73 373 162 HOH HOH . E 3 HOH A 74 374 152 HOH HOH . E 3 HOH A 75 375 134 HOH HOH . E 3 HOH A 76 376 43 HOH HOH . E 3 HOH A 77 377 108 HOH HOH . E 3 HOH A 78 378 126 HOH HOH . E 3 HOH A 79 379 129 HOH HOH . F 3 HOH B 1 301 2 HOH HOH . F 3 HOH B 2 302 114 HOH HOH . F 3 HOH B 3 303 82 HOH HOH . F 3 HOH B 4 304 83 HOH HOH . F 3 HOH B 5 305 25 HOH HOH . F 3 HOH B 6 306 29 HOH HOH . F 3 HOH B 7 307 155 HOH HOH . F 3 HOH B 8 308 3 HOH HOH . F 3 HOH B 9 309 6 HOH HOH . F 3 HOH B 10 310 21 HOH HOH . F 3 HOH B 11 311 76 HOH HOH . F 3 HOH B 12 312 31 HOH HOH . F 3 HOH B 13 313 173 HOH HOH . F 3 HOH B 14 314 60 HOH HOH . F 3 HOH B 15 315 95 HOH HOH . F 3 HOH B 16 316 116 HOH HOH . F 3 HOH B 17 317 47 HOH HOH . F 3 HOH B 18 318 158 HOH HOH . F 3 HOH B 19 319 98 HOH HOH . F 3 HOH B 20 320 100 HOH HOH . F 3 HOH B 21 321 45 HOH HOH . F 3 HOH B 22 322 85 HOH HOH . F 3 HOH B 23 323 87 HOH HOH . F 3 HOH B 24 324 53 HOH HOH . F 3 HOH B 25 325 33 HOH HOH . F 3 HOH B 26 326 58 HOH HOH . F 3 HOH B 27 327 92 HOH HOH . F 3 HOH B 28 328 81 HOH HOH . F 3 HOH B 29 329 62 HOH HOH . F 3 HOH B 30 330 118 HOH HOH . F 3 HOH B 31 331 32 HOH HOH . F 3 HOH B 32 332 10 HOH HOH . F 3 HOH B 33 333 115 HOH HOH . F 3 HOH B 34 334 157 HOH HOH . F 3 HOH B 35 335 39 HOH HOH . F 3 HOH B 36 336 109 HOH HOH . F 3 HOH B 37 337 75 HOH HOH . F 3 HOH B 38 338 74 HOH HOH . F 3 HOH B 39 339 52 HOH HOH . F 3 HOH B 40 340 94 HOH HOH . F 3 HOH B 41 341 104 HOH HOH . F 3 HOH B 42 342 69 HOH HOH . F 3 HOH B 43 343 14 HOH HOH . F 3 HOH B 44 344 107 HOH HOH . F 3 HOH B 45 345 151 HOH HOH . F 3 HOH B 46 346 19 HOH HOH . F 3 HOH B 47 347 46 HOH HOH . F 3 HOH B 48 348 41 HOH HOH . F 3 HOH B 49 349 28 HOH HOH . F 3 HOH B 50 350 102 HOH HOH . F 3 HOH B 51 351 159 HOH HOH . F 3 HOH B 52 352 97 HOH HOH . F 3 HOH B 53 353 18 HOH HOH . F 3 HOH B 54 354 9 HOH HOH . F 3 HOH B 55 355 30 HOH HOH . F 3 HOH B 56 356 161 HOH HOH . F 3 HOH B 57 357 172 HOH HOH . F 3 HOH B 58 358 86 HOH HOH . F 3 HOH B 59 359 168 HOH HOH . F 3 HOH B 60 360 77 HOH HOH . F 3 HOH B 61 361 65 HOH HOH . F 3 HOH B 62 362 153 HOH HOH . F 3 HOH B 63 363 149 HOH HOH . F 3 HOH B 64 364 44 HOH HOH . F 3 HOH B 65 365 165 HOH HOH . F 3 HOH B 66 366 156 HOH HOH . F 3 HOH B 67 367 154 HOH HOH . F 3 HOH B 68 368 67 HOH HOH . F 3 HOH B 69 369 130 HOH HOH . F 3 HOH B 70 370 143 HOH HOH . F 3 HOH B 71 371 160 HOH HOH . F 3 HOH B 72 372 122 HOH HOH . F 3 HOH B 73 373 145 HOH HOH . F 3 HOH B 74 374 80 HOH HOH . F 3 HOH B 75 375 89 HOH HOH . F 3 HOH B 76 376 125 HOH HOH . F 3 HOH B 77 377 146 HOH HOH . F 3 HOH B 78 378 78 HOH HOH . F 3 HOH B 79 379 124 HOH HOH . F 3 HOH B 80 380 142 HOH HOH . F 3 HOH B 81 381 59 HOH HOH . F 3 HOH B 82 382 163 HOH HOH . F 3 HOH B 83 383 133 HOH HOH . F 3 HOH B 84 384 127 HOH HOH . F 3 HOH B 85 385 144 HOH HOH . F 3 HOH B 86 386 171 HOH HOH . F 3 HOH B 87 387 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB G4P . . . D 2 -26.958 1.401 14.526 1 34.03 ? PB G4P 201 B 1 HETATM 2 O O1B G4P . . . D 2 -25.506 1.132 14.871 1 33.39 ? O1B G4P 201 B 1 HETATM 3 O O2B G4P . . . D 2 -27.493 2.621 15.219 1 32.14 ? O2B G4P 201 B 1 HETATM 4 O O3B G4P . . . D 2 -27.112 1.606 13.02 1 35.71 ? O3B G4P 201 B 1 HETATM 5 O O3A G4P . . . D 2 -27.875 0.141 14.895 1 38.63 ? O3A G4P 201 B 1 HETATM 6 P PA G4P . . . D 2 -27.497 -1.175 15.752 1 36.34 ? PA G4P 201 B 1 HETATM 7 O O1A G4P . . . D 2 -27.016 -0.726 17.102 1 35.61 ? O1A G4P 201 B 1 HETATM 8 O O2A G4P . . . D 2 -26.445 -2.032 15.105 1 35.53 ? O2A G4P 201 B 1 HETATM 9 O O5' G4P . . . D 2 -28.828 -2.047 15.835 1 35.25 ? O5' G4P 201 B 1 HETATM 10 C C5' G4P . . . D 2 -30.029 -1.497 16.426 1 39.22 ? C5' G4P 201 B 1 HETATM 11 C C4' G4P . . . D 2 -30.898 -2.492 16.857 1 44.51 ? C4' G4P 201 B 1 HETATM 12 O O4' G4P . . . D 2 -31.46 -3.282 15.71 1 39.45 ? O4' G4P 201 B 1 HETATM 13 C C3' G4P . . . D 2 -30.206 -3.63 17.799 1 57.19 ? C3' G4P 201 B 1 HETATM 14 O O3' G4P . . . D 2 -31.239 -4.2 18.716 1 77.75 ? O3' G4P 201 B 1 HETATM 15 C C2' G4P . . . D 2 -29.901 -4.51 16.997 1 43.25 ? C2' G4P 201 B 1 HETATM 16 O O2' G4P . . . D 2 -29.76 -5.829 17.648 1 45.3 ? O2' G4P 201 B 1 HETATM 17 C C1' G4P . . . D 2 -31.171 -4.532 15.955 1 39.65 ? C1' G4P 201 B 1 HETATM 18 N N9 G4P . . . D 2 -30.762 -5.187 14.815 1 41.2 ? N9 G4P 201 B 1 HETATM 19 C C8 G4P . . . D 2 -29.634 -5.003 14.092 1 44.29 ? C8 G4P 201 B 1 HETATM 20 N N7 G4P . . . D 2 -29.682 -5.895 13.069 1 39.92 ? N7 G4P 201 B 1 HETATM 21 C C5 G4P . . . D 2 -30.829 -6.615 13.182 1 40.55 ? C5 G4P 201 B 1 HETATM 22 C C6 G4P . . . D 2 -31.4 -7.725 12.357 1 46.57 ? C6 G4P 201 B 1 HETATM 23 O O6 G4P . . . D 2 -30.811 -8.125 11.385 1 46.83 ? O6 G4P 201 B 1 HETATM 24 N N1 G4P . . . D 2 -32.633 -8.297 12.723 1 50.26 ? N1 G4P 201 B 1 HETATM 25 C C2 G4P . . . D 2 -33.328 -7.828 13.858 1 44.86 ? C2 G4P 201 B 1 HETATM 26 N N2 G4P . . . D 2 -34.573 -8.418 14.212 1 46.38 ? N2 G4P 201 B 1 HETATM 27 N N3 G4P . . . D 2 -32.784 -6.762 14.656 1 47.32 ? N3 G4P 201 B 1 HETATM 28 C C4 G4P . . . D 2 -31.501 -6.173 14.277 1 43.16 ? C4 G4P 201 B 1 HETATM 29 P PC G4P . . . D 2 -31.41 -3.648 20.191 1 98.39 ? PC G4P 201 B 1 HETATM 30 O O1C G4P . . . D 2 -30.473 -4.42 21.106 1 99.09 ? O1C G4P 201 B 1 HETATM 31 O O2C G4P . . . D 2 -31.076 -2.172 20.243 1 97.54 ? O2C G4P 201 B 1 HETATM 32 O O3C G4P . . . D 2 -32.922 -3.85 20.63 1 121.73 ? O3C G4P 201 B 1 HETATM 33 P PD G4P . . . D 2 -34.156 -3.702 19.672 1 139.17 ? PD G4P 201 B 1 HETATM 34 O O1D G4P . . . D 2 -34.039 -2.427 18.875 1 138.56 ? O1D G4P 201 B 1 HETATM 35 O O2D G4P . . . D 2 -34.218 -4.881 18.725 1 140.9 ? O2D G4P 201 B 1 HETATM 36 O O3D G4P . . . D 2 -35.424 -3.658 20.503 1 143.32 ? O3D G4P 201 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #