data_8E0H
#
_model_server_result.job_id            KYDXskZCJ9z13lL-I-H5aw 
_model_server_result.datetime_utc      '2024-11-28 02:22:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e0h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8E0H 
#
_exptl.entry_id    8E0H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              603.16 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5',3'-TETRAPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E0H 
_cell.length_a            44.534 
_cell.length_b            61.082 
_cell.length_c            133.945 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E0H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H17 N5 O17 P4' 
_chem_comp.formula_weight    603.16 
_chem_comp.id                G4P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5',3'-TETRAPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     'guanosine tetraphosphate;ppGpp' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B G4P doub 83 n n 
PB O2B G4P sing 84 n n 
PB O3B G4P sing 85 n n 
PB O3A G4P sing 86 n n 
O2B HOB2 G4P sing 87 n n 
O3B HOB3 G4P sing 88 n n 
O3A PA G4P sing 89 n n 
PA O1A G4P doub 90 n n 
PA O2A G4P sing 91 n n 
PA O5' G4P sing 92 n n 
O2A HOA2 G4P sing 93 n n 
O5' C5' G4P sing 94 n n 
C5' C4' G4P sing 95 n n 
C5' H5' G4P sing 96 n n 
C5' "H5''" G4P sing 97 n n 
C4' O4' G4P sing 98 n n 
C4' C3' G4P sing 99 n n 
C4' H4' G4P sing 100 n n 
O4' C1' G4P sing 101 n n 
C3' O3' G4P sing 102 n n 
C3' C2' G4P sing 103 n n 
C3' H3' G4P sing 104 n n 
O3' PC G4P sing 105 n n 
C2' O2' G4P sing 106 n n 
C2' C1' G4P sing 107 n n 
C2' H2' G4P sing 108 n n 
O2' HO2' G4P sing 109 n n 
C1' N9 G4P sing 110 n n 
C1' H1' G4P sing 111 n n 
N9 C8 G4P sing 112 n y 
N9 C4 G4P sing 113 n y 
C8 N7 G4P doub 114 n y 
C8 H8 G4P sing 115 n n 
N7 C5 G4P sing 116 n y 
C5 C6 G4P sing 117 n n 
C5 C4 G4P doub 118 n y 
C6 O6 G4P doub 119 n n 
C6 N1 G4P sing 120 n n 
N1 C2 G4P sing 121 n n 
N1 HN1 G4P sing 122 n n 
C2 N2 G4P sing 123 n n 
C2 N3 G4P doub 124 n n 
N2 HN21 G4P sing 125 n n 
N2 HN22 G4P sing 126 n n 
N3 C4 G4P sing 127 n n 
PC O1C G4P doub 128 n n 
PC O2C G4P sing 129 n n 
PC O3C G4P sing 130 n n 
O2C H2C G4P sing 131 n n 
O3C PD G4P sing 132 n n 
PD O1D G4P doub 133 n n 
PD O2D G4P sing 134 n n 
PD O3D G4P sing 135 n n 
O2D H2D G4P sing 136 n n 
O3D H3D G4P sing 137 n n 
#
_atom_sites.entry_id                     8E0H 
_atom_sites.fract_transf_matrix[1][1]    0.022455 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G4P A 1 201 1 G4P G4P . 
D 2 G4P B 1 201 2 G4P G4P . 
E 3 HOH A 1 301 7 HOH HOH . 
E 3 HOH A 2 302 139 HOH HOH . 
E 3 HOH A 3 303 27 HOH HOH . 
E 3 HOH A 4 304 91 HOH HOH . 
E 3 HOH A 5 305 141 HOH HOH . 
E 3 HOH A 6 306 4 HOH HOH . 
E 3 HOH A 7 307 36 HOH HOH . 
E 3 HOH A 8 308 37 HOH HOH . 
E 3 HOH A 9 309 42 HOH HOH . 
E 3 HOH A 10 310 110 HOH HOH . 
E 3 HOH A 11 311 38 HOH HOH . 
E 3 HOH A 12 312 8 HOH HOH . 
E 3 HOH A 13 313 66 HOH HOH . 
E 3 HOH A 14 314 113 HOH HOH . 
E 3 HOH A 15 315 131 HOH HOH . 
E 3 HOH A 16 316 63 HOH HOH . 
E 3 HOH A 17 317 34 HOH HOH . 
E 3 HOH A 18 318 99 HOH HOH . 
E 3 HOH A 19 319 57 HOH HOH . 
E 3 HOH A 20 320 111 HOH HOH . 
E 3 HOH A 21 321 170 HOH HOH . 
E 3 HOH A 22 322 26 HOH HOH . 
E 3 HOH A 23 323 5 HOH HOH . 
E 3 HOH A 24 324 51 HOH HOH . 
E 3 HOH A 25 325 24 HOH HOH . 
E 3 HOH A 26 326 50 HOH HOH . 
E 3 HOH A 27 327 96 HOH HOH . 
E 3 HOH A 28 328 40 HOH HOH . 
E 3 HOH A 29 329 61 HOH HOH . 
E 3 HOH A 30 330 1 HOH HOH . 
E 3 HOH A 31 331 123 HOH HOH . 
E 3 HOH A 32 332 15 HOH HOH . 
E 3 HOH A 33 333 93 HOH HOH . 
E 3 HOH A 34 334 84 HOH HOH . 
E 3 HOH A 35 335 72 HOH HOH . 
E 3 HOH A 36 336 13 HOH HOH . 
E 3 HOH A 37 337 16 HOH HOH . 
E 3 HOH A 38 338 22 HOH HOH . 
E 3 HOH A 39 339 12 HOH HOH . 
E 3 HOH A 40 340 71 HOH HOH . 
E 3 HOH A 41 341 137 HOH HOH . 
E 3 HOH A 42 342 56 HOH HOH . 
E 3 HOH A 43 343 73 HOH HOH . 
E 3 HOH A 44 344 55 HOH HOH . 
E 3 HOH A 45 345 88 HOH HOH . 
E 3 HOH A 46 346 112 HOH HOH . 
E 3 HOH A 47 347 103 HOH HOH . 
E 3 HOH A 48 348 90 HOH HOH . 
E 3 HOH A 49 349 64 HOH HOH . 
E 3 HOH A 50 350 147 HOH HOH . 
E 3 HOH A 51 351 140 HOH HOH . 
E 3 HOH A 52 352 128 HOH HOH . 
E 3 HOH A 53 353 11 HOH HOH . 
E 3 HOH A 54 354 70 HOH HOH . 
E 3 HOH A 55 355 17 HOH HOH . 
E 3 HOH A 56 356 148 HOH HOH . 
E 3 HOH A 57 357 136 HOH HOH . 
E 3 HOH A 58 358 20 HOH HOH . 
E 3 HOH A 59 359 117 HOH HOH . 
E 3 HOH A 60 360 23 HOH HOH . 
E 3 HOH A 61 361 166 HOH HOH . 
E 3 HOH A 62 362 101 HOH HOH . 
E 3 HOH A 63 363 135 HOH HOH . 
E 3 HOH A 64 364 174 HOH HOH . 
E 3 HOH A 65 365 68 HOH HOH . 
E 3 HOH A 66 366 35 HOH HOH . 
E 3 HOH A 67 367 54 HOH HOH . 
E 3 HOH A 68 368 121 HOH HOH . 
E 3 HOH A 69 369 132 HOH HOH . 
E 3 HOH A 70 370 169 HOH HOH . 
E 3 HOH A 71 371 138 HOH HOH . 
E 3 HOH A 72 372 48 HOH HOH . 
E 3 HOH A 73 373 162 HOH HOH . 
E 3 HOH A 74 374 152 HOH HOH . 
E 3 HOH A 75 375 134 HOH HOH . 
E 3 HOH A 76 376 43 HOH HOH . 
E 3 HOH A 77 377 108 HOH HOH . 
E 3 HOH A 78 378 126 HOH HOH . 
E 3 HOH A 79 379 129 HOH HOH . 
F 3 HOH B 1 301 2 HOH HOH . 
F 3 HOH B 2 302 114 HOH HOH . 
F 3 HOH B 3 303 82 HOH HOH . 
F 3 HOH B 4 304 83 HOH HOH . 
F 3 HOH B 5 305 25 HOH HOH . 
F 3 HOH B 6 306 29 HOH HOH . 
F 3 HOH B 7 307 155 HOH HOH . 
F 3 HOH B 8 308 3 HOH HOH . 
F 3 HOH B 9 309 6 HOH HOH . 
F 3 HOH B 10 310 21 HOH HOH . 
F 3 HOH B 11 311 76 HOH HOH . 
F 3 HOH B 12 312 31 HOH HOH . 
F 3 HOH B 13 313 173 HOH HOH . 
F 3 HOH B 14 314 60 HOH HOH . 
F 3 HOH B 15 315 95 HOH HOH . 
F 3 HOH B 16 316 116 HOH HOH . 
F 3 HOH B 17 317 47 HOH HOH . 
F 3 HOH B 18 318 158 HOH HOH . 
F 3 HOH B 19 319 98 HOH HOH . 
F 3 HOH B 20 320 100 HOH HOH . 
F 3 HOH B 21 321 45 HOH HOH . 
F 3 HOH B 22 322 85 HOH HOH . 
F 3 HOH B 23 323 87 HOH HOH . 
F 3 HOH B 24 324 53 HOH HOH . 
F 3 HOH B 25 325 33 HOH HOH . 
F 3 HOH B 26 326 58 HOH HOH . 
F 3 HOH B 27 327 92 HOH HOH . 
F 3 HOH B 28 328 81 HOH HOH . 
F 3 HOH B 29 329 62 HOH HOH . 
F 3 HOH B 30 330 118 HOH HOH . 
F 3 HOH B 31 331 32 HOH HOH . 
F 3 HOH B 32 332 10 HOH HOH . 
F 3 HOH B 33 333 115 HOH HOH . 
F 3 HOH B 34 334 157 HOH HOH . 
F 3 HOH B 35 335 39 HOH HOH . 
F 3 HOH B 36 336 109 HOH HOH . 
F 3 HOH B 37 337 75 HOH HOH . 
F 3 HOH B 38 338 74 HOH HOH . 
F 3 HOH B 39 339 52 HOH HOH . 
F 3 HOH B 40 340 94 HOH HOH . 
F 3 HOH B 41 341 104 HOH HOH . 
F 3 HOH B 42 342 69 HOH HOH . 
F 3 HOH B 43 343 14 HOH HOH . 
F 3 HOH B 44 344 107 HOH HOH . 
F 3 HOH B 45 345 151 HOH HOH . 
F 3 HOH B 46 346 19 HOH HOH . 
F 3 HOH B 47 347 46 HOH HOH . 
F 3 HOH B 48 348 41 HOH HOH . 
F 3 HOH B 49 349 28 HOH HOH . 
F 3 HOH B 50 350 102 HOH HOH . 
F 3 HOH B 51 351 159 HOH HOH . 
F 3 HOH B 52 352 97 HOH HOH . 
F 3 HOH B 53 353 18 HOH HOH . 
F 3 HOH B 54 354 9 HOH HOH . 
F 3 HOH B 55 355 30 HOH HOH . 
F 3 HOH B 56 356 161 HOH HOH . 
F 3 HOH B 57 357 172 HOH HOH . 
F 3 HOH B 58 358 86 HOH HOH . 
F 3 HOH B 59 359 168 HOH HOH . 
F 3 HOH B 60 360 77 HOH HOH . 
F 3 HOH B 61 361 65 HOH HOH . 
F 3 HOH B 62 362 153 HOH HOH . 
F 3 HOH B 63 363 149 HOH HOH . 
F 3 HOH B 64 364 44 HOH HOH . 
F 3 HOH B 65 365 165 HOH HOH . 
F 3 HOH B 66 366 156 HOH HOH . 
F 3 HOH B 67 367 154 HOH HOH . 
F 3 HOH B 68 368 67 HOH HOH . 
F 3 HOH B 69 369 130 HOH HOH . 
F 3 HOH B 70 370 143 HOH HOH . 
F 3 HOH B 71 371 160 HOH HOH . 
F 3 HOH B 72 372 122 HOH HOH . 
F 3 HOH B 73 373 145 HOH HOH . 
F 3 HOH B 74 374 80 HOH HOH . 
F 3 HOH B 75 375 89 HOH HOH . 
F 3 HOH B 76 376 125 HOH HOH . 
F 3 HOH B 77 377 146 HOH HOH . 
F 3 HOH B 78 378 78 HOH HOH . 
F 3 HOH B 79 379 124 HOH HOH . 
F 3 HOH B 80 380 142 HOH HOH . 
F 3 HOH B 81 381 59 HOH HOH . 
F 3 HOH B 82 382 163 HOH HOH . 
F 3 HOH B 83 383 133 HOH HOH . 
F 3 HOH B 84 384 127 HOH HOH . 
F 3 HOH B 85 385 144 HOH HOH . 
F 3 HOH B 86 386 171 HOH HOH . 
F 3 HOH B 87 387 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB G4P . . . D 2 -26.958 1.401 14.526 1 34.03 ? PB G4P 201 B 1 
HETATM 2 O O1B G4P . . . D 2 -25.506 1.132 14.871 1 33.39 ? O1B G4P 201 B 1 
HETATM 3 O O2B G4P . . . D 2 -27.493 2.621 15.219 1 32.14 ? O2B G4P 201 B 1 
HETATM 4 O O3B G4P . . . D 2 -27.112 1.606 13.02 1 35.71 ? O3B G4P 201 B 1 
HETATM 5 O O3A G4P . . . D 2 -27.875 0.141 14.895 1 38.63 ? O3A G4P 201 B 1 
HETATM 6 P PA G4P . . . D 2 -27.497 -1.175 15.752 1 36.34 ? PA G4P 201 B 1 
HETATM 7 O O1A G4P . . . D 2 -27.016 -0.726 17.102 1 35.61 ? O1A G4P 201 B 1 
HETATM 8 O O2A G4P . . . D 2 -26.445 -2.032 15.105 1 35.53 ? O2A G4P 201 B 1 
HETATM 9 O O5' G4P . . . D 2 -28.828 -2.047 15.835 1 35.25 ? O5' G4P 201 B 1 
HETATM 10 C C5' G4P . . . D 2 -30.029 -1.497 16.426 1 39.22 ? C5' G4P 201 B 1 
HETATM 11 C C4' G4P . . . D 2 -30.898 -2.492 16.857 1 44.51 ? C4' G4P 201 B 1 
HETATM 12 O O4' G4P . . . D 2 -31.46 -3.282 15.71 1 39.45 ? O4' G4P 201 B 1 
HETATM 13 C C3' G4P . . . D 2 -30.206 -3.63 17.799 1 57.19 ? C3' G4P 201 B 1 
HETATM 14 O O3' G4P . . . D 2 -31.239 -4.2 18.716 1 77.75 ? O3' G4P 201 B 1 
HETATM 15 C C2' G4P . . . D 2 -29.901 -4.51 16.997 1 43.25 ? C2' G4P 201 B 1 
HETATM 16 O O2' G4P . . . D 2 -29.76 -5.829 17.648 1 45.3 ? O2' G4P 201 B 1 
HETATM 17 C C1' G4P . . . D 2 -31.171 -4.532 15.955 1 39.65 ? C1' G4P 201 B 1 
HETATM 18 N N9 G4P . . . D 2 -30.762 -5.187 14.815 1 41.2 ? N9 G4P 201 B 1 
HETATM 19 C C8 G4P . . . D 2 -29.634 -5.003 14.092 1 44.29 ? C8 G4P 201 B 1 
HETATM 20 N N7 G4P . . . D 2 -29.682 -5.895 13.069 1 39.92 ? N7 G4P 201 B 1 
HETATM 21 C C5 G4P . . . D 2 -30.829 -6.615 13.182 1 40.55 ? C5 G4P 201 B 1 
HETATM 22 C C6 G4P . . . D 2 -31.4 -7.725 12.357 1 46.57 ? C6 G4P 201 B 1 
HETATM 23 O O6 G4P . . . D 2 -30.811 -8.125 11.385 1 46.83 ? O6 G4P 201 B 1 
HETATM 24 N N1 G4P . . . D 2 -32.633 -8.297 12.723 1 50.26 ? N1 G4P 201 B 1 
HETATM 25 C C2 G4P . . . D 2 -33.328 -7.828 13.858 1 44.86 ? C2 G4P 201 B 1 
HETATM 26 N N2 G4P . . . D 2 -34.573 -8.418 14.212 1 46.38 ? N2 G4P 201 B 1 
HETATM 27 N N3 G4P . . . D 2 -32.784 -6.762 14.656 1 47.32 ? N3 G4P 201 B 1 
HETATM 28 C C4 G4P . . . D 2 -31.501 -6.173 14.277 1 43.16 ? C4 G4P 201 B 1 
HETATM 29 P PC G4P . . . D 2 -31.41 -3.648 20.191 1 98.39 ? PC G4P 201 B 1 
HETATM 30 O O1C G4P . . . D 2 -30.473 -4.42 21.106 1 99.09 ? O1C G4P 201 B 1 
HETATM 31 O O2C G4P . . . D 2 -31.076 -2.172 20.243 1 97.54 ? O2C G4P 201 B 1 
HETATM 32 O O3C G4P . . . D 2 -32.922 -3.85 20.63 1 121.73 ? O3C G4P 201 B 1 
HETATM 33 P PD G4P . . . D 2 -34.156 -3.702 19.672 1 139.17 ? PD G4P 201 B 1 
HETATM 34 O O1D G4P . . . D 2 -34.039 -2.427 18.875 1 138.56 ? O1D G4P 201 B 1 
HETATM 35 O O2D G4P . . . D 2 -34.218 -4.881 18.725 1 140.9 ? O2D G4P 201 B 1 
HETATM 36 O O3D G4P . . . D 2 -35.424 -3.658 20.503 1 143.32 ? O3D G4P 201 B 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#