data_8E0W
#
_model_server_result.job_id            dGtrA0Cr5DP4g33uolBBmw 
_model_server_result.datetime_utc      '2024-11-12 21:42:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e0w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":505}' 
#
_entry.id    8E0W 
#
_exptl.entry_id    8E0W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         74.5 
_cell.angle_beta          76.82 
_cell.angle_gamma         72.23 
_cell.entry_id            8E0W 
_cell.length_a            50.344 
_cell.length_b            65.599 
_cell.length_c            79.686 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E0W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,N 1 1 
B,H,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 52 1_555 A SG CYS 443 A CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 59 A CYS 82 1_555 A SG CYS 92 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 148 A CYS 171 1_555 A SG CYS 175 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 A SG CYS 241 A CYS 264 1_555 A SG CYS 244 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf5 A SG CYS 277 A CYS 300 1_555 A SG CYS 311 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 367 A CYS 390 1_555 A SG CYS 387 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 B SG CYS 29 B CYS 52 1_555 B SG CYS 443 B CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 B SG CYS 59 B CYS 82 1_555 B SG CYS 92 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 B SG CYS 148 B CYS 171 1_555 B SG CYS 175 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 B SG CYS 241 B CYS 264 1_555 B SG CYS 244 B CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 B SG CYS 277 B CYS 300 1_555 B SG CYS 311 B CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf12 B SG CYS 367 B CYS 390 1_555 B SG CYS 387 B CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 77 A ASN 100 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 A ND2 ASN 145 A ASN 168 1_555 D C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
covale ? covale3 A ND2 ASN 296 A ASN 319 1_555 E C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale4 B ND2 ASN 77 B ASN 100 1_555 H C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale5 B ND2 ASN 145 B ASN 168 1_555 I C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 B ND2 ASN 296 B ASN 319 1_555 J C1 NAG . B NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8E0W 
_atom_sites.fract_transf_matrix[1][1]    0.019863 
_atom_sites.fract_transf_matrix[1][2]    -0.006366 
_atom_sites.fract_transf_matrix[1][3]    -0.003372 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016008 
_atom_sites.fract_transf_matrix[2][3]    -0.003492 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013192 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 501 468 NAG NAG . 
D 2 NAG A 1 502 469 NAG NAG . 
E 2 NAG A 1 503 470 NAG NAG . 
F 3 GOL A 1 504 471 GOL GOL . 
G 4 CL A 1 505 1 CL CL . 
H 2 NAG B 1 501 468 NAG NAG . 
I 2 NAG B 1 502 469 NAG NAG . 
J 2 NAG B 1 503 470 NAG NAG . 
K 3 GOL B 1 504 471 GOL GOL . 
L 3 GOL B 1 505 472 GOL GOL . 
M 4 CL B 1 506 2 CL CL . 
N 5 HOH A 1 601 90 HOH HOH . 
N 5 HOH A 2 602 121 HOH HOH . 
N 5 HOH A 3 603 86 HOH HOH . 
N 5 HOH A 4 604 124 HOH HOH . 
N 5 HOH A 5 605 148 HOH HOH . 
N 5 HOH A 6 606 103 HOH HOH . 
N 5 HOH A 7 607 97 HOH HOH . 
N 5 HOH A 8 608 216 HOH HOH . 
N 5 HOH A 9 609 85 HOH HOH . 
N 5 HOH A 10 610 101 HOH HOH . 
N 5 HOH A 11 611 191 HOH HOH . 
N 5 HOH A 12 612 170 HOH HOH . 
N 5 HOH A 13 613 211 HOH HOH . 
N 5 HOH A 14 614 30 HOH HOH . 
N 5 HOH A 15 615 106 HOH HOH . 
N 5 HOH A 16 616 29 HOH HOH . 
N 5 HOH A 17 617 17 HOH HOH . 
N 5 HOH A 18 618 96 HOH HOH . 
N 5 HOH A 19 619 53 HOH HOH . 
N 5 HOH A 20 620 129 HOH HOH . 
N 5 HOH A 21 621 63 HOH HOH . 
N 5 HOH A 22 622 24 HOH HOH . 
N 5 HOH A 23 623 141 HOH HOH . 
N 5 HOH A 24 624 221 HOH HOH . 
N 5 HOH A 25 625 126 HOH HOH . 
N 5 HOH A 26 626 38 HOH HOH . 
N 5 HOH A 27 627 14 HOH HOH . 
N 5 HOH A 28 628 88 HOH HOH . 
N 5 HOH A 29 629 217 HOH HOH . 
N 5 HOH A 30 630 100 HOH HOH . 
N 5 HOH A 31 631 61 HOH HOH . 
N 5 HOH A 32 632 6 HOH HOH . 
N 5 HOH A 33 633 39 HOH HOH . 
N 5 HOH A 34 634 72 HOH HOH . 
N 5 HOH A 35 635 80 HOH HOH . 
N 5 HOH A 36 636 56 HOH HOH . 
N 5 HOH A 37 637 190 HOH HOH . 
N 5 HOH A 38 638 76 HOH HOH . 
N 5 HOH A 39 639 18 HOH HOH . 
N 5 HOH A 40 640 40 HOH HOH . 
N 5 HOH A 41 641 172 HOH HOH . 
N 5 HOH A 42 642 70 HOH HOH . 
N 5 HOH A 43 643 104 HOH HOH . 
N 5 HOH A 44 644 180 HOH HOH . 
N 5 HOH A 45 645 50 HOH HOH . 
N 5 HOH A 46 646 95 HOH HOH . 
N 5 HOH A 47 647 34 HOH HOH . 
N 5 HOH A 48 648 74 HOH HOH . 
N 5 HOH A 49 649 202 HOH HOH . 
N 5 HOH A 50 650 4 HOH HOH . 
N 5 HOH A 51 651 20 HOH HOH . 
N 5 HOH A 52 652 51 HOH HOH . 
N 5 HOH A 53 653 218 HOH HOH . 
N 5 HOH A 54 654 37 HOH HOH . 
N 5 HOH A 55 655 151 HOH HOH . 
N 5 HOH A 56 656 92 HOH HOH . 
N 5 HOH A 57 657 64 HOH HOH . 
N 5 HOH A 58 658 212 HOH HOH . 
N 5 HOH A 59 659 102 HOH HOH . 
N 5 HOH A 60 660 54 HOH HOH . 
N 5 HOH A 61 661 22 HOH HOH . 
N 5 HOH A 62 662 60 HOH HOH . 
N 5 HOH A 63 663 58 HOH HOH . 
N 5 HOH A 64 664 143 HOH HOH . 
N 5 HOH A 65 665 201 HOH HOH . 
N 5 HOH A 66 666 78 HOH HOH . 
N 5 HOH A 67 667 122 HOH HOH . 
N 5 HOH A 68 668 162 HOH HOH . 
N 5 HOH A 69 669 118 HOH HOH . 
N 5 HOH A 70 670 165 HOH HOH . 
N 5 HOH A 71 671 152 HOH HOH . 
N 5 HOH A 72 672 82 HOH HOH . 
N 5 HOH A 73 673 48 HOH HOH . 
N 5 HOH A 74 674 83 HOH HOH . 
N 5 HOH A 75 675 130 HOH HOH . 
N 5 HOH A 76 676 123 HOH HOH . 
N 5 HOH A 77 677 207 HOH HOH . 
N 5 HOH A 78 678 89 HOH HOH . 
N 5 HOH A 79 679 93 HOH HOH . 
N 5 HOH A 80 680 107 HOH HOH . 
N 5 HOH A 81 681 42 HOH HOH . 
N 5 HOH A 82 682 192 HOH HOH . 
N 5 HOH A 83 683 91 HOH HOH . 
N 5 HOH A 84 684 77 HOH HOH . 
N 5 HOH A 85 685 209 HOH HOH . 
N 5 HOH A 86 686 84 HOH HOH . 
N 5 HOH A 87 687 105 HOH HOH . 
N 5 HOH A 88 688 120 HOH HOH . 
N 5 HOH A 89 689 208 HOH HOH . 
N 5 HOH A 90 690 142 HOH HOH . 
N 5 HOH A 91 691 193 HOH HOH . 
N 5 HOH A 92 692 94 HOH HOH . 
N 5 HOH A 93 693 145 HOH HOH . 
N 5 HOH A 94 694 128 HOH HOH . 
N 5 HOH A 95 695 194 HOH HOH . 
N 5 HOH A 96 696 99 HOH HOH . 
N 5 HOH A 97 697 127 HOH HOH . 
O 5 HOH B 1 601 109 HOH HOH . 
O 5 HOH B 2 602 169 HOH HOH . 
O 5 HOH B 3 603 13 HOH HOH . 
O 5 HOH B 4 604 220 HOH HOH . 
O 5 HOH B 5 605 214 HOH HOH . 
O 5 HOH B 6 606 5 HOH HOH . 
O 5 HOH B 7 607 12 HOH HOH . 
O 5 HOH B 8 608 178 HOH HOH . 
O 5 HOH B 9 609 188 HOH HOH . 
O 5 HOH B 10 610 163 HOH HOH . 
O 5 HOH B 11 611 204 HOH HOH . 
O 5 HOH B 12 612 150 HOH HOH . 
O 5 HOH B 13 613 44 HOH HOH . 
O 5 HOH B 14 614 73 HOH HOH . 
O 5 HOH B 15 615 33 HOH HOH . 
O 5 HOH B 16 616 115 HOH HOH . 
O 5 HOH B 17 617 177 HOH HOH . 
O 5 HOH B 18 618 26 HOH HOH . 
O 5 HOH B 19 619 41 HOH HOH . 
O 5 HOH B 20 620 113 HOH HOH . 
O 5 HOH B 21 621 210 HOH HOH . 
O 5 HOH B 22 622 23 HOH HOH . 
O 5 HOH B 23 623 43 HOH HOH . 
O 5 HOH B 24 624 175 HOH HOH . 
O 5 HOH B 25 625 67 HOH HOH . 
O 5 HOH B 26 626 31 HOH HOH . 
O 5 HOH B 27 627 134 HOH HOH . 
O 5 HOH B 28 628 27 HOH HOH . 
O 5 HOH B 29 629 157 HOH HOH . 
O 5 HOH B 30 630 46 HOH HOH . 
O 5 HOH B 31 631 176 HOH HOH . 
O 5 HOH B 32 632 181 HOH HOH . 
O 5 HOH B 33 633 45 HOH HOH . 
O 5 HOH B 34 634 3 HOH HOH . 
O 5 HOH B 35 635 116 HOH HOH . 
O 5 HOH B 36 636 10 HOH HOH . 
O 5 HOH B 37 637 140 HOH HOH . 
O 5 HOH B 38 638 159 HOH HOH . 
O 5 HOH B 39 639 49 HOH HOH . 
O 5 HOH B 40 640 219 HOH HOH . 
O 5 HOH B 41 641 15 HOH HOH . 
O 5 HOH B 42 642 71 HOH HOH . 
O 5 HOH B 43 643 2 HOH HOH . 
O 5 HOH B 44 644 189 HOH HOH . 
O 5 HOH B 45 645 185 HOH HOH . 
O 5 HOH B 46 646 19 HOH HOH . 
O 5 HOH B 47 647 35 HOH HOH . 
O 5 HOH B 48 648 158 HOH HOH . 
O 5 HOH B 49 649 187 HOH HOH . 
O 5 HOH B 50 650 69 HOH HOH . 
O 5 HOH B 51 651 36 HOH HOH . 
O 5 HOH B 52 652 32 HOH HOH . 
O 5 HOH B 53 653 199 HOH HOH . 
O 5 HOH B 54 654 213 HOH HOH . 
O 5 HOH B 55 655 197 HOH HOH . 
O 5 HOH B 56 656 196 HOH HOH . 
O 5 HOH B 57 657 8 HOH HOH . 
O 5 HOH B 58 658 111 HOH HOH . 
O 5 HOH B 59 659 11 HOH HOH . 
O 5 HOH B 60 660 112 HOH HOH . 
O 5 HOH B 61 661 206 HOH HOH . 
O 5 HOH B 62 662 55 HOH HOH . 
O 5 HOH B 63 663 138 HOH HOH . 
O 5 HOH B 64 664 182 HOH HOH . 
O 5 HOH B 65 665 117 HOH HOH . 
O 5 HOH B 66 666 7 HOH HOH . 
O 5 HOH B 67 667 75 HOH HOH . 
O 5 HOH B 68 668 110 HOH HOH . 
O 5 HOH B 69 669 173 HOH HOH . 
O 5 HOH B 70 670 198 HOH HOH . 
O 5 HOH B 71 671 184 HOH HOH . 
O 5 HOH B 72 672 195 HOH HOH . 
O 5 HOH B 73 673 87 HOH HOH . 
O 5 HOH B 74 674 114 HOH HOH . 
O 5 HOH B 75 675 135 HOH HOH . 
O 5 HOH B 76 676 200 HOH HOH . 
O 5 HOH B 77 677 153 HOH HOH . 
O 5 HOH B 78 678 137 HOH HOH . 
O 5 HOH B 79 679 167 HOH HOH . 
O 5 HOH B 80 680 154 HOH HOH . 
O 5 HOH B 81 681 98 HOH HOH . 
O 5 HOH B 82 682 215 HOH HOH . 
O 5 HOH B 83 683 205 HOH HOH . 
O 5 HOH B 84 684 147 HOH HOH . 
O 5 HOH B 85 685 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 3 5.15 22.764 -65.247 1 59.52 ? C1 GOL 505 B 1 
HETATM 2 O O1 GOL . . . L 3 4.193 22.385 -64.302 1 65.27 ? O1 GOL 505 B 1 
HETATM 3 C C2 GOL . . . L 3 4.449 22.906 -66.587 1 51.73 ? C2 GOL 505 B 1 
HETATM 4 O O2 GOL . . . L 3 3.397 23.818 -66.546 1 68.4 ? O2 GOL 505 B 1 
HETATM 5 C C3 GOL . . . L 3 5.549 23.266 -67.567 1 53.76 ? C3 GOL 505 B 1 
HETATM 6 O O3 GOL . . . L 3 4.978 23.34 -68.836 1 61.89 ? O3 GOL 505 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#