data_8E1O
#
_model_server_result.job_id            QBpp-7NDDJqXZRnUJeFU8A 
_model_server_result.datetime_utc      '2025-02-27 12:03:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    8E1O 
#
_exptl.entry_id    8E1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              489.53 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-methoxy-N-({3-[2-(methylamino)-2-oxoethyl]phenyl}methyl)-4-{(E)-2-[trans-4-(trifluoromethyl)cyclohexyl]ethenyl}pyridine-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.41 
_cell.angle_gamma         90 
_cell.entry_id            8E1O 
_cell.length_a            122.15 
_cell.length_b            62.069 
_cell.length_c            79.856 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C26 H30 F3 N3 O3' 
_chem_comp.formula_weight    489.53 
_chem_comp.id                Y2S 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-methoxy-N-({3-[2-(methylamino)-2-oxoethyl]phenyl}methyl)-4-{(E)-2-[trans-4-(trifluoromethyl)cyclohexyl]ethenyl}pyridine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F35 C32 Y2S sing 395 n n 
F34 C32 Y2S sing 396 n n 
C32 F33 Y2S sing 397 n n 
C32 C28 Y2S sing 398 n n 
C28 C27 Y2S sing 399 n n 
C28 C30 Y2S sing 400 n n 
C27 C26 Y2S sing 401 n n 
C26 C24 Y2S sing 402 n n 
C30 C31 Y2S sing 403 n n 
C31 C24 Y2S sing 404 n n 
C24 C23 Y2S sing 405 n n 
C23 C22 Y2S doub 406 e n 
C22 C20 Y2S sing 407 n n 
O36 C19 Y2S sing 408 n n 
O36 C37 Y2S sing 409 n n 
C20 C19 Y2S doub 410 n y 
C20 C21 Y2S sing 411 n y 
C19 C18 Y2S sing 412 n y 
C21 C16 Y2S doub 413 n y 
C10 C11 Y2S doub 414 n y 
C10 C9 Y2S sing 415 n y 
O15 C14 Y2S doub 416 n n 
C18 N17 Y2S doub 417 n y 
C16 N17 Y2S sing 418 n y 
C16 C14 Y2S sing 419 n n 
C11 C6 Y2S sing 420 n y 
C9 C8 Y2S doub 421 n y 
C14 N13 Y2S sing 422 n n 
O4 C3 Y2S doub 423 n n 
C6 C5 Y2S sing 424 n n 
C6 C7 Y2S doub 425 n y 
C8 C7 Y2S sing 426 n y 
C8 C12 Y2S sing 427 n n 
C5 C3 Y2S sing 428 n n 
C3 N2 Y2S sing 429 n n 
N13 C12 Y2S sing 430 n n 
N2 C1 Y2S sing 431 n n 
C5 H1 Y2S sing 432 n n 
C5 H2 Y2S sing 433 n n 
C11 H3 Y2S sing 434 n n 
C7 H4 Y2S sing 435 n n 
C9 H5 Y2S sing 436 n n 
C10 H6 Y2S sing 437 n n 
C12 H7 Y2S sing 438 n n 
C12 H8 Y2S sing 439 n n 
N2 H9 Y2S sing 440 n n 
C1 H10 Y2S sing 441 n n 
C1 H11 Y2S sing 442 n n 
C1 H12 Y2S sing 443 n n 
N13 H13 Y2S sing 444 n n 
C18 H14 Y2S sing 445 n n 
C21 H15 Y2S sing 446 n n 
C22 H16 Y2S sing 447 n n 
C23 H17 Y2S sing 448 n n 
C24 H18 Y2S sing 449 n n 
C26 H19 Y2S sing 450 n n 
C26 H20 Y2S sing 451 n n 
C27 H21 Y2S sing 452 n n 
C27 H22 Y2S sing 453 n n 
C28 H23 Y2S sing 454 n n 
C30 H24 Y2S sing 455 n n 
C30 H25 Y2S sing 456 n n 
C31 H26 Y2S sing 457 n n 
C31 H27 Y2S sing 458 n n 
C37 H28 Y2S sing 459 n n 
C37 H29 Y2S sing 460 n n 
C37 H30 Y2S sing 461 n n 
#
_atom_sites.entry_id                     8E1O 
_atom_sites.fract_transf_matrix[1][1]    0.008187 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004246 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014106 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 TRS A 1 601 601 TRS TRS . 
D 3 Y2S A 1 602 602 Y2S Y2S . 
E 3 Y2S B 1 501 501 Y2S Y2S . 
F 4 HOH A 1 701 701 HOH HOH . 
F 4 HOH A 2 702 702 HOH HOH . 
F 4 HOH A 3 703 703 HOH HOH . 
F 4 HOH A 4 704 704 HOH HOH . 
F 4 HOH A 5 705 705 HOH HOH . 
F 4 HOH A 6 706 706 HOH HOH . 
F 4 HOH A 7 707 707 HOH HOH . 
F 4 HOH A 8 708 708 HOH HOH . 
F 4 HOH A 9 709 709 HOH HOH . 
F 4 HOH A 10 710 710 HOH HOH . 
F 4 HOH A 11 711 711 HOH HOH . 
F 4 HOH A 12 712 712 HOH HOH . 
G 4 HOH B 1 601 601 HOH HOH . 
G 4 HOH B 2 602 602 HOH HOH . 
G 4 HOH B 3 603 603 HOH HOH . 
G 4 HOH B 4 604 604 HOH HOH . 
G 4 HOH B 5 605 605 HOH HOH . 
G 4 HOH B 6 606 606 HOH HOH . 
G 4 HOH B 7 607 607 HOH HOH . 
G 4 HOH B 8 608 608 HOH HOH . 
G 4 HOH B 9 609 609 HOH HOH . 
G 4 HOH B 10 610 610 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 Y2S . . . D 3 -38.091 -11.954 18.119 1 44.3 ? C14 Y2S 602 A 1 
HETATM 2 C C5 Y2S . . . D 3 -40.28 -5.308 17.526 1 46.56 ? C5 Y2S 602 A 1 
HETATM 3 C C6 Y2S . . . D 3 -39.325 -6.481 17.528 1 49.86 ? C6 Y2S 602 A 1 
HETATM 4 C C11 Y2S . . . D 3 -38.143 -6.421 16.802 1 53.6 ? C11 Y2S 602 A 1 
HETATM 5 C C7 Y2S . . . D 3 -39.61 -7.63 18.259 1 47.66 ? C7 Y2S 602 A 1 
HETATM 6 C C8 Y2S . . . D 3 -38.723 -8.706 18.259 1 47.28 ? C8 Y2S 602 A 1 
HETATM 7 C C9 Y2S . . . D 3 -37.543 -8.64 17.531 1 47.77 ? C9 Y2S 602 A 1 
HETATM 8 C C10 Y2S . . . D 3 -37.256 -7.493 16.805 1 50.64 ? C10 Y2S 602 A 1 
HETATM 9 C C12 Y2S . . . D 3 -39.065 -9.943 19.049 1 47.76 ? C12 Y2S 602 A 1 
HETATM 10 N N2 Y2S . . . D 3 -42.627 -6.119 17.527 1 58.41 ? N2 Y2S 602 A 1 
HETATM 11 C C3 Y2S . . . D 3 -41.568 -5.66 16.821 1 59.59 ? C3 Y2S 602 A 1 
HETATM 12 C C1 Y2S . . . D 3 -42.545 -6.284 18.983 1 50.04 ? C1 Y2S 602 A 1 
HETATM 13 O O4 Y2S . . . D 3 -41.651 -5.526 15.615 1 59.35 ? O4 Y2S 602 A 1 
HETATM 14 N N13 Y2S . . . D 3 -38.008 -10.96 19.023 1 44.08 ? N13 Y2S 602 A 1 
HETATM 15 O O15 Y2S . . . D 3 -39.03 -11.973 17.344 1 42.16 ? O15 Y2S 602 A 1 
HETATM 16 C C16 Y2S . . . D 3 -37.066 -13.024 18.079 1 39.19 ? C16 Y2S 602 A 1 
HETATM 17 N N17 Y2S . . . D 3 -36.064 -13.024 18.955 1 36.35 ? N17 Y2S 602 A 1 
HETATM 18 C C18 Y2S . . . D 3 -35.143 -13.964 18.958 1 29.67 ? C18 Y2S 602 A 1 
HETATM 19 C C19 Y2S . . . D 3 -35.199 -15.005 18.04 1 31.28 ? C19 Y2S 602 A 1 
HETATM 20 C C20 Y2S . . . D 3 -36.237 -15.051 17.118 1 23.47 ? C20 Y2S 602 A 1 
HETATM 21 C C21 Y2S . . . D 3 -37.191 -14.042 17.14 1 29.69 ? C21 Y2S 602 A 1 
HETATM 22 C C22 Y2S . . . D 3 -36.307 -16.143 16.145 1 25.66 ? C22 Y2S 602 A 1 
HETATM 23 C C23 Y2S . . . D 3 -37.366 -16.163 15.361 1 29.62 ? C23 Y2S 602 A 1 
HETATM 24 C C24 Y2S . . . D 3 -37.528 -17.239 14.326 1 30.91 ? C24 Y2S 602 A 1 
HETATM 25 C C26 Y2S . . . D 3 -37.575 -16.539 12.967 1 33.23 ? C26 Y2S 602 A 1 
HETATM 26 C C27 Y2S . . . D 3 -37.752 -17.595 11.881 1 32.18 ? C27 Y2S 602 A 1 
HETATM 27 C C28 Y2S . . . D 3 -36.518 -18.491 11.936 1 34.75 ? C28 Y2S 602 A 1 
HETATM 28 C C30 Y2S . . . D 3 -36.532 -19.248 13.267 1 39.2 ? C30 Y2S 602 A 1 
HETATM 29 C C31 Y2S . . . D 3 -36.369 -18.23 14.399 1 38.05 ? C31 Y2S 602 A 1 
HETATM 30 C C32 Y2S . . . D 3 -36.514 -19.477 10.77 1 42.09 ? C32 Y2S 602 A 1 
HETATM 31 O O36 Y2S . . . D 3 -34.268 -15.984 18.022 1 34.13 ? O36 Y2S 602 A 1 
HETATM 32 C C37 Y2S . . . D 3 -33.244 -15.882 19.01 1 36.43 ? C37 Y2S 602 A 1 
HETATM 33 F F33 Y2S . . . D 3 -37.354 -20.558 11.044 1 45.83 ? F33 Y2S 602 A 1 
HETATM 34 F F34 Y2S . . . D 3 -37.002 -18.839 9.625 1 43.44 ? F34 Y2S 602 A 1 
HETATM 35 F F35 Y2S . . . D 3 -35.199 -19.924 10.556 1 35.85 ? F35 Y2S 602 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#