data_8E1Q # _model_server_result.job_id ByOA5FORdLumyqSS3EdLpA _model_server_result.datetime_utc '2024-10-18 14:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8E1Q # _exptl.entry_id 8E1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.407 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-{[2-(trifluoromethyl)phenyl]methyl}-1,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E1Q _cell.length_a 88.837 _cell.length_b 88.837 _cell.length_c 133.209 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc7 B MN MN . A MN 201 1_555 D O01 U0I . A U0I 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.072 ? metalc ? metalc8 B MN MN . A MN 201 1_555 D O01 U0I . A U0I 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.076 ? metalc ? metalc9 B MN MN . A MN 201 1_555 D O33 U0I . A U0I 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.966 ? metalc ? metalc10 B MN MN . A MN 201 1_555 D O33 U0I . A U0I 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? metalc ? metalc11 C MN MN . A MN 202 1_555 D O31 U0I . A U0I 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.031 ? metalc ? metalc12 C MN MN . A MN 202 1_555 D O31 U0I . A U0I 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.159 ? metalc ? metalc13 C MN MN . A MN 202 1_555 D O33 U0I . A U0I 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.688 ? metalc ? metalc14 C MN MN . A MN 202 1_555 D O33 U0I . A U0I 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.686 ? # _chem_comp.formula 'C22 H20 F3 N3 O5' _chem_comp.formula_weight 463.407 _chem_comp.id U0I _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-6-oxo-2-{[2-(trifluoromethyl)phenyl]methyl}-1,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 U0I doub 471 n n O33 C32 U0I sing 472 n n C02 C32 U0I sing 473 n n C02 N03 U0I sing 474 n n F11 C08 U0I sing 475 n n F09 C08 U0I sing 476 n n C32 C17 U0I doub 477 n n N03 C04 U0I sing 478 n n F10 C08 U0I sing 479 n n C08 C07 U0I sing 480 n n C17 C18 U0I sing 481 n n C17 N16 U0I sing 482 n n O31 C18 U0I doub 483 n n C04 N16 U0I doub 484 n n C04 C05 U0I sing 485 n n C18 N19 U0I sing 486 n n C05 C06 U0I sing 487 n n C07 C06 U0I doub 488 n y C07 C12 U0I sing 489 n y C06 C15 U0I sing 490 n y N19 C20 U0I sing 491 n n C12 C13 U0I doub 492 n y C20 C21 U0I sing 493 n n C15 C14 U0I doub 494 n y C23 C24 U0I doub 495 n y C23 C22 U0I sing 496 n y C13 C14 U0I sing 497 n y C24 C25 U0I sing 498 n y C21 C22 U0I sing 499 n n C22 C30 U0I doub 500 n y C25 O26 U0I sing 501 n n C25 C27 U0I doub 502 n y C30 C27 U0I sing 503 n y C27 O28 U0I sing 504 n n O28 C29 U0I sing 505 n n C05 H1 U0I sing 506 n n C05 H2 U0I sing 507 n n C12 H3 U0I sing 508 n n C13 H4 U0I sing 509 n n C14 H5 U0I sing 510 n n C15 H6 U0I sing 511 n n C20 H7 U0I sing 512 n n C20 H8 U0I sing 513 n n C21 H9 U0I sing 514 n n C21 H10 U0I sing 515 n n C23 H11 U0I sing 516 n n C24 H12 U0I sing 517 n n C29 H13 U0I sing 518 n n C29 H14 U0I sing 519 n n C29 H15 U0I sing 520 n n C30 H16 U0I sing 521 n n N19 H18 U0I sing 522 n n O26 H19 U0I sing 523 n n O33 H20 U0I sing 524 n n N03 H17 U0I sing 525 n n # _atom_sites.entry_id 8E1Q _atom_sites.fract_transf_matrix[1][1] 0.011257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 U0I A 1 203 203 U0I 018 . E 4 QQ4 A 1 204 401 QQ4 PVP . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 26 HOH HOH . H 6 HOH A 2 302 20 HOH HOH . H 6 HOH A 3 303 22 HOH HOH . H 6 HOH A 4 304 5 HOH HOH . H 6 HOH A 5 305 12 HOH HOH . H 6 HOH A 6 306 19 HOH HOH . H 6 HOH A 7 307 9 HOH HOH . H 6 HOH A 8 308 17 HOH HOH . H 6 HOH A 9 309 11 HOH HOH . H 6 HOH A 10 310 30 HOH HOH . H 6 HOH A 11 311 15 HOH HOH . H 6 HOH A 12 312 6 HOH HOH . H 6 HOH A 13 313 27 HOH HOH . H 6 HOH A 14 314 24 HOH HOH . H 6 HOH A 15 315 4 HOH HOH . H 6 HOH A 16 316 8 HOH HOH . H 6 HOH A 17 317 25 HOH HOH . H 6 HOH A 18 318 16 HOH HOH . H 6 HOH A 19 319 13 HOH HOH . H 6 HOH A 20 320 3 HOH HOH . H 6 HOH A 21 321 10 HOH HOH . H 6 HOH A 22 322 21 HOH HOH . H 6 HOH A 23 323 2 HOH HOH . H 6 HOH A 24 324 23 HOH HOH . H 6 HOH A 25 325 7 HOH HOH . H 6 HOH A 26 326 28 HOH HOH . H 6 HOH A 27 327 14 HOH HOH . H 6 HOH A 28 328 31 HOH HOH . H 6 HOH A 29 329 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 U0I . A . D 3 38.621 15.175 18.135 0.48 84.74 ? C02 U0I 203 A 1 HETATM 2 C C02 U0I . B . D 3 38.632 15.202 18.019 0.52 84.71 ? C02 U0I 203 A 1 HETATM 3 C C04 U0I . A . D 3 38.275 13.258 16.49 0.48 105.37 ? C04 U0I 203 A 1 HETATM 4 C C04 U0I . B . D 3 38.233 13.384 16.276 0.52 105.39 ? C04 U0I 203 A 1 HETATM 5 C C05 U0I . A . D 3 37.361 12.164 15.842 0.48 108.64 ? C05 U0I 203 A 1 HETATM 6 C C05 U0I . B . D 3 37.281 12.372 15.553 0.52 107.97 ? C05 U0I 203 A 1 HETATM 7 C C06 U0I . A . D 3 38.252 11.276 14.913 0.48 116.58 ? C06 U0I 203 A 1 HETATM 8 C C06 U0I . B . D 3 38.158 11.405 14.691 0.52 116.53 ? C06 U0I 203 A 1 HETATM 9 C C07 U0I . A . D 3 39.061 10.224 15.432 0.48 119.66 ? C07 U0I 203 A 1 HETATM 10 C C07 U0I . B . D 3 38.816 10.279 15.265 0.52 120.08 ? C07 U0I 203 A 1 HETATM 11 C C08 U0I . A . D 3 39.109 9.88 16.933 0.48 121.83 ? C08 U0I 203 A 1 HETATM 12 C C08 U0I . B . D 3 38.706 9.929 16.761 0.52 122.9 ? C08 U0I 203 A 1 HETATM 13 C C12 U0I . A . D 3 39.838 9.467 14.559 0.48 114.96 ? C12 U0I 203 A 1 HETATM 14 C C12 U0I . B . D 3 39.588 9.453 14.451 0.52 115.99 ? C12 U0I 203 A 1 HETATM 15 C C13 U0I . A . D 3 39.833 9.734 13.19 0.48 113 ? C13 U0I 203 A 1 HETATM 16 C C13 U0I . B . D 3 39.723 9.722 13.088 0.52 113.01 ? C13 U0I 203 A 1 HETATM 17 C C14 U0I . A . D 3 39.038 10.773 12.681 0.48 113.24 ? C14 U0I 203 A 1 HETATM 18 C C14 U0I . B . D 3 39.077 10.835 12.526 0.52 113.12 ? C14 U0I 203 A 1 HETATM 19 C C15 U0I . A . D 3 38.254 11.539 13.548 0.48 114.41 ? C15 U0I 203 A 1 HETATM 20 C C15 U0I . B . D 3 38.299 11.669 13.333 0.52 113.83 ? C15 U0I 203 A 1 HETATM 21 C C17 U0I . A . D 3 40.576 14.376 16.619 0.48 97.52 ? C17 U0I 203 A 1 HETATM 22 C C17 U0I . B . D 3 40.585 14.374 16.517 0.52 97.63 ? C17 U0I 203 A 1 HETATM 23 C C18 U0I . A . D 3 42.049 14.507 16.148 0.48 96.83 ? C18 U0I 203 A 1 HETATM 24 C C18 U0I . B . D 3 42.073 14.432 16.079 0.52 96.83 ? C18 U0I 203 A 1 HETATM 25 C C20 U0I . A . D 3 43.965 13.778 14.652 0.48 105.7 ? C20 U0I 203 A 1 HETATM 26 C C20 U0I . B . D 3 43.953 13.581 14.58 0.52 105.81 ? C20 U0I 203 A 1 HETATM 27 C C21 U0I . A . D 3 43.976 14.493 13.28 0.48 103.36 ? C21 U0I 203 A 1 HETATM 28 C C21 U0I . B . D 3 44.89 12.899 15.603 0.52 99.66 ? C21 U0I 203 A 1 HETATM 29 C C22 U0I . A . D 3 42.525 14.697 12.741 0.48 102.36 ? C22 U0I 203 A 1 HETATM 30 C C22 U0I . B . D 3 44.185 11.826 16.487 0.52 92.57 ? C22 U0I 203 A 1 HETATM 31 C C23 U0I . A . D 3 41.808 15.842 13.064 0.48 95.67 ? C23 U0I 203 A 1 HETATM 32 C C23 U0I . B . D 3 43.932 12.088 17.825 0.52 96.68 ? C23 U0I 203 A 1 HETATM 33 C C24 U0I . A . D 3 40.503 16.009 12.58 0.48 90.47 ? C24 U0I 203 A 1 HETATM 34 C C24 U0I . B . D 3 43.3 11.121 18.62 0.52 100.83 ? C24 U0I 203 A 1 HETATM 35 C C25 U0I . A . D 3 39.931 15.029 11.781 0.48 95.01 ? C25 U0I 203 A 1 HETATM 36 C C25 U0I . B . D 3 42.934 9.902 18.067 0.52 102.65 ? C25 U0I 203 A 1 HETATM 37 C C27 U0I . A . D 3 40.649 13.885 11.461 0.48 99.82 ? C27 U0I 203 A 1 HETATM 38 C C27 U0I . B . D 3 43.193 9.641 16.728 0.52 100.78 ? C27 U0I 203 A 1 HETATM 39 C C29 U0I . A . D 3 40.106 13.191 9.268 0.48 104.64 ? C29 U0I 203 A 1 HETATM 40 C C29 U0I . B . D 3 43.909 7.526 15.949 0.52 100 ? C29 U0I 203 A 1 HETATM 41 C C30 U0I . A . D 3 41.947 13.717 11.942 0.48 101.7 ? C30 U0I 203 A 1 HETATM 42 C C30 U0I . B . D 3 43.821 10.603 15.936 0.52 96.9 ? C30 U0I 203 A 1 HETATM 43 C C32 U0I . A . D 3 40.054 15.293 17.676 0.48 89.37 ? C32 U0I 203 A 1 HETATM 44 C C32 U0I . B . D 3 40.082 15.268 17.605 0.52 88.93 ? C32 U0I 203 A 1 HETATM 45 F F09 U0I . A . D 3 37.861 9.538 17.384 0.48 123.18 ? F09 U0I 203 A 1 HETATM 46 F F09 U0I . B . D 3 37.397 9.729 17.113 0.52 123.57 ? F09 U0I 203 A 1 HETATM 47 F F10 U0I . A . D 3 39.592 10.933 17.659 0.48 115.59 ? F10 U0I 203 A 1 HETATM 48 F F10 U0I . B . D 3 39.247 10.923 17.529 0.52 117.59 ? F10 U0I 203 A 1 HETATM 49 F F11 U0I . A . D 3 39.943 8.816 17.11 0.48 119.42 ? F11 U0I 203 A 1 HETATM 50 F F11 U0I . B . D 3 39.399 8.777 16.993 0.52 121.48 ? F11 U0I 203 A 1 HETATM 51 N N03 U0I . A . D 3 37.748 14.164 17.542 0.48 94.15 ? N03 U0I 203 A 1 HETATM 52 N N03 U0I . B . D 3 37.725 14.268 17.356 0.52 94.26 ? N03 U0I 203 A 1 HETATM 53 N N16 U0I . A . D 3 39.701 13.373 16.03 0.48 104.42 ? N16 U0I 203 A 1 HETATM 54 N N16 U0I . B . D 3 39.675 13.446 15.861 0.52 104.62 ? N16 U0I 203 A 1 HETATM 55 N N19 U0I . A . D 3 42.566 13.631 15.104 0.48 102.11 ? N19 U0I 203 A 1 HETATM 56 N N19 U0I . B . D 3 42.543 13.545 15.02 0.52 102.19 ? N19 U0I 203 A 1 HETATM 57 O O01 U0I . A . D 3 38.195 15.895 18.974 0.48 85.03 ? O01 U0I 203 A 1 HETATM 58 O O01 U0I . B . D 3 38.221 15.905 18.88 0.52 81.57 ? O01 U0I 203 A 1 HETATM 59 O O26 U0I . A . D 3 38.62 15.192 11.292 0.48 95.22 ? O26 U0I 203 A 1 HETATM 60 O O26 U0I . B . D 3 42.299 8.929 18.866 0.52 102.44 ? O26 U0I 203 A 1 HETATM 61 O O28 U0I . A . D 3 40.066 12.891 10.647 0.48 103.83 ? O28 U0I 203 A 1 HETATM 62 O O28 U0I . B . D 3 42.821 8.403 16.164 0.52 106.6 ? O28 U0I 203 A 1 HETATM 63 O O31 U0I . A . D 3 42.754 15.33 16.633 0.48 96.45 ? O31 U0I 203 A 1 HETATM 64 O O31 U0I . B . D 3 42.821 15.191 16.607 0.52 96.5 ? O31 U0I 203 A 1 HETATM 65 O O33 U0I . A . D 3 40.923 16.253 18.221 0.48 87.01 ? O33 U0I 203 A 1 HETATM 66 O O33 U0I . B . D 3 40.973 16.16 18.227 0.52 86.85 ? O33 U0I 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 66 #