data_8E1X # _model_server_result.job_id '_E4AIn1d_AJMwMKXV_CA0w' _model_server_result.datetime_utc '2024-11-23 04:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 8E1X # _exptl.entry_id 8E1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 446.505 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5M)-N-methyl-5-{(6M,8S)-5-{[(3S)-oxolan-3-yl]amino}-6-[1-(propan-2-yl)-1H-pyrazol-3-yl]pyrazolo[1,5-a]pyrimidin-3-yl}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E1X _cell.length_a 76.515 _cell.length_b 77.482 _cell.length_c 126.272 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 122 A LEU 560 1_555 A N PTR 123 A PTR 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C PTR 123 A PTR 561 1_555 A N VAL 124 A VAL 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLU 147 A GLU 585 1_555 A N PTR 148 A PTR 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C PTR 148 A PTR 586 1_555 A N SER 149 A SER 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C LEU 122 B LEU 560 1_555 B N PTR 123 B PTR 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C PTR 123 B PTR 561 1_555 B N VAL 124 B VAL 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C GLU 147 B GLU 585 1_555 B N PTR 148 B PTR 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 B C PTR 148 B PTR 586 1_555 B N SER 149 B SER 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C23 H26 N8 O2' _chem_comp.formula_weight 446.505 _chem_comp.id U9P _chem_comp.mon_nstd_flag . _chem_comp.name (5M)-N-methyl-5-{(6M,8S)-5-{[(3S)-oxolan-3-yl]amino}-6-[1-(propan-2-yl)-1H-pyrazol-3-yl]pyrazolo[1,5-a]pyrimidin-3-yl}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 U9P sing 387 n n C10 C9 U9P doub 388 n y C10 N4 U9P sing 389 n y C9 C7 U9P sing 390 n y N4 C20 U9P sing 391 n n N4 N5 U9P sing 392 n y C20 C22 U9P sing 393 n n C7 N5 U9P doub 394 n y C7 C1 U9P sing 395 n n C4 C1 U9P doub 396 n y C4 N2 U9P sing 397 n y C1 C2 U9P sing 398 n y N3 N2 U9P sing 399 n y N3 C6 U9P doub 400 n y N2 C3 U9P sing 401 n y C2 N6 U9P sing 402 n n C2 N1 U9P doub 403 n y C6 C5 U9P sing 404 n y N6 C11 U9P sing 405 n n C3 N1 U9P sing 406 n y C3 C5 U9P doub 407 n y C5 C8 U9P sing 408 n n C14 C11 U9P sing 409 n n C14 C13 U9P sing 410 n n C11 C12 U9P sing 411 n n C8 C15 U9P doub 412 n y C8 C18 U9P sing 413 n y C15 N7 U9P sing 414 n y C18 C17 U9P doub 415 n y C12 O1 U9P sing 416 n n N7 C16 U9P doub 417 n y C13 O1 U9P sing 418 n n C17 C16 U9P sing 419 n y C17 C19 U9P sing 420 n n N8 C19 U9P sing 421 n n N8 C23 U9P sing 422 n n C19 O2 U9P doub 423 n n C10 H1 U9P sing 424 n n C11 H2 U9P sing 425 n n C12 H3 U9P sing 426 n n C12 H4 U9P sing 427 n n C13 H5 U9P sing 428 n n C13 H6 U9P sing 429 n n C14 H7 U9P sing 430 n n C14 H8 U9P sing 431 n n C15 H9 U9P sing 432 n n C16 H10 U9P sing 433 n n C18 H11 U9P sing 434 n n C20 H12 U9P sing 435 n n C21 H13 U9P sing 436 n n C21 H14 U9P sing 437 n n C21 H15 U9P sing 438 n n C22 H16 U9P sing 439 n n C22 H17 U9P sing 440 n n C22 H18 U9P sing 441 n n C23 H19 U9P sing 442 n n C23 H20 U9P sing 443 n n C23 H21 U9P sing 444 n n C4 H22 U9P sing 445 n n C6 H23 U9P sing 446 n n C9 H24 U9P sing 447 n n N6 H25 U9P sing 448 n n N8 H26 U9P sing 449 n n # _atom_sites.entry_id 8E1X _atom_sites.fract_transf_matrix[1][1] 0.013069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U9P A 1 801 1 U9P UNL . D 2 U9P B 1 801 2 U9P UNL . E 3 HOH A 1 901 20 HOH HOH . E 3 HOH A 2 902 18 HOH HOH . E 3 HOH A 3 903 11 HOH HOH . E 3 HOH A 4 904 19 HOH HOH . E 3 HOH A 5 905 22 HOH HOH . E 3 HOH A 6 906 4 HOH HOH . E 3 HOH A 7 907 23 HOH HOH . E 3 HOH A 8 908 3 HOH HOH . E 3 HOH A 9 909 21 HOH HOH . E 3 HOH A 10 910 14 HOH HOH . E 3 HOH A 11 911 9 HOH HOH . E 3 HOH A 12 912 12 HOH HOH . E 3 HOH A 13 913 16 HOH HOH . E 3 HOH A 14 914 7 HOH HOH . E 3 HOH A 15 915 17 HOH HOH . F 3 HOH B 1 901 6 HOH HOH . F 3 HOH B 2 902 1 HOH HOH . F 3 HOH B 3 903 10 HOH HOH . F 3 HOH B 4 904 8 HOH HOH . F 3 HOH B 5 905 15 HOH HOH . F 3 HOH B 6 906 5 HOH HOH . F 3 HOH B 7 907 13 HOH HOH . F 3 HOH B 8 908 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U9P . . . D 2 57.773 2.458 1.37 1 46.35 ? C1 U9P 801 B 1 HETATM 2 C C10 U9P . . . D 2 61.123 2.548 3.004 1 49.87 ? C10 U9P 801 B 1 HETATM 3 C C11 U9P . . . D 2 57.813 4.507 -1.913 1 38.24 ? C11 U9P 801 B 1 HETATM 4 C C12 U9P . . . D 2 57.616 3.407 -2.939 1 36.7 ? C12 U9P 801 B 1 HETATM 5 C C13 U9P . . . D 2 59.706 4.479 -3.356 1 39.01 ? C13 U9P 801 B 1 HETATM 6 C C14 U9P . . . D 2 59.007 5.307 -2.291 1 39.86 ? C14 U9P 801 B 1 HETATM 7 C C15 U9P . . . D 2 51.6 1.764 -0.289 1 48.57 ? C15 U9P 801 B 1 HETATM 8 C C16 U9P . . . D 2 50.986 2.394 -2.436 1 48.2 ? C16 U9P 801 B 1 HETATM 9 C C17 U9P . . . D 2 52.306 2.566 -2.763 1 49.53 ? C17 U9P 801 B 1 HETATM 10 C C18 U9P . . . D 2 53.286 2.335 -1.857 1 48.67 ? C18 U9P 801 B 1 HETATM 11 C C19 U9P . . . D 2 52.607 3.012 -4.184 1 52.59 ? C19 U9P 801 B 1 HETATM 12 C C2 U9P . . . D 2 57.231 3.063 0.153 1 42.64 ? C2 U9P 801 B 1 HETATM 13 C C20 U9P . . . D 2 62.634 3.889 1.413 1 48.26 ? C20 U9P 801 B 1 HETATM 14 C C21 U9P . . . D 2 62.325 5.104 0.542 1 48.57 ? C21 U9P 801 B 1 HETATM 15 C C22 U9P . . . D 2 63.399 4.363 2.643 1 51.53 ? C22 U9P 801 B 1 HETATM 16 C C23 U9P . . . D 2 54.041 3.72 -6.041 1 53.33 ? C23 U9P 801 B 1 HETATM 17 C C3 U9P . . . D 2 55.176 2.057 0.51 1 43.88 ? C3 U9P 801 B 1 HETATM 18 C C4 U9P . . . D 2 56.944 1.644 2.101 1 47.13 ? C4 U9P 801 B 1 HETATM 19 C C5 U9P . . . D 2 53.959 1.622 0.5 1 44.23 ? C5 U9P 801 B 1 HETATM 20 C C6 U9P . . . D 2 53.533 0.816 1.428 1 43.13 ? C6 U9P 801 B 1 HETATM 21 C C7 U9P . . . D 2 59.225 2.672 1.811 1 48.34 ? C7 U9P 801 B 1 HETATM 22 C C8 U9P . . . D 2 52.946 1.947 -0.59 1 47.52 ? C8 U9P 801 B 1 HETATM 23 C C9 U9P . . . D 2 59.817 2.169 2.99 1 49.82 ? C9 U9P 801 B 1 HETATM 24 N N1 U9P . . . D 2 55.902 2.858 -0.27 1 42.39 ? N1 U9P 801 B 1 HETATM 25 N N2 U9P . . . D 2 55.653 1.436 1.684 1 45.49 ? N2 U9P 801 B 1 HETATM 26 N N3 U9P . . . D 2 54.544 0.605 2.299 1 44.7 ? N3 U9P 801 B 1 HETATM 27 N N4 U9P . . . D 2 61.381 3.282 1.824 1 48.6 ? N4 U9P 801 B 1 HETATM 28 N N5 U9P . . . D 2 60.175 3.34 1.089 1 48.83 ? N5 U9P 801 B 1 HETATM 29 N N6 U9P . . . D 2 58.121 3.912 -0.606 1 39.75 ? N6 U9P 801 B 1 HETATM 30 N N7 U9P . . . D 2 50.644 1.998 -1.208 1 48.49 ? N7 U9P 801 B 1 HETATM 31 N N8 U9P . . . D 2 53.941 3.313 -4.651 1 53.61 ? N8 U9P 801 B 1 HETATM 32 O O1 U9P . . . D 2 58.884 3.297 -3.631 1 37.53 ? O1 U9P 801 B 1 HETATM 33 O O2 U9P . . . D 2 51.704 3.113 -4.941 1 53.35 ? O2 U9P 801 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #