data_8E1Y # _model_server_result.job_id iHmIiSv3cGy8BTAI7tRwCw _model_server_result.datetime_utc '2024-11-05 12:46:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e1y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8E1Y # _exptl.entry_id 8E1Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E1Y _cell.length_a 100.905 _cell.length_b 103.925 _cell.length_c 68.025 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E1Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id 4WI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 4WI _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.777 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 154 n n S C1 DMS sing 155 n n S C2 DMS sing 156 n n C1 H11 DMS sing 157 n n C1 H12 DMS sing 158 n n C1 H13 DMS sing 159 n n C2 H21 DMS sing 160 n n C2 H22 DMS sing 161 n n C2 H23 DMS sing 162 n n # _atom_sites.entry_id 8E1Y _atom_sites.fract_transf_matrix[1][1] 0.00991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4WI A 1 401 401 4WI DRG . D 3 DMS A 1 402 402 DMS DMS . E 3 DMS B 1 401 401 DMS DMS . F 2 4WI B 1 402 402 4WI DRG . G 4 HOH A 1 501 18 HOH HOH . G 4 HOH A 2 502 10 HOH HOH . G 4 HOH A 3 503 29 HOH HOH . G 4 HOH A 4 504 16 HOH HOH . G 4 HOH A 5 505 21 HOH HOH . G 4 HOH A 6 506 20 HOH HOH . G 4 HOH A 7 507 22 HOH HOH . G 4 HOH A 8 508 4 HOH HOH . G 4 HOH A 9 509 28 HOH HOH . G 4 HOH A 10 510 1 HOH HOH . G 4 HOH A 11 511 26 HOH HOH . G 4 HOH A 12 512 2 HOH HOH . G 4 HOH A 13 513 19 HOH HOH . G 4 HOH A 14 514 5 HOH HOH . G 4 HOH A 15 515 13 HOH HOH . G 4 HOH A 16 516 27 HOH HOH . G 4 HOH A 17 517 24 HOH HOH . H 4 HOH B 1 501 3 HOH HOH . H 4 HOH B 2 502 11 HOH HOH . H 4 HOH B 3 503 9 HOH HOH . H 4 HOH B 4 504 17 HOH HOH . H 4 HOH B 5 505 15 HOH HOH . H 4 HOH B 6 506 6 HOH HOH . H 4 HOH B 7 507 7 HOH HOH . H 4 HOH B 8 508 8 HOH HOH . H 4 HOH B 9 509 12 HOH HOH . H 4 HOH B 10 510 25 HOH HOH . H 4 HOH B 11 511 14 HOH HOH . H 4 HOH B 12 512 23 HOH HOH . H 4 HOH B 13 513 30 HOH HOH . H 4 HOH B 14 514 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 11.251 -18.444 0.455 1 46.7 0 S DMS 402 A 1 HETATM 2 O O DMS . . . D 3 10.458 -19.029 -0.685 1 43.96 0 O DMS 402 A 1 HETATM 3 C C1 DMS . . . D 3 11.825 -16.865 -0.123 1 44.07 0 C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . D 3 12.792 -19.338 0.466 1 46.4 0 C2 DMS 402 A 1 HETATM 5 H H11 DMS . . . D 3 12.342 -16.436 0.569 1 44.7 0 H11 DMS 402 A 1 HETATM 6 H H12 DMS . . . D 3 11.064 -16.311 -0.346 1 44.65 0 H12 DMS 402 A 1 HETATM 7 H H13 DMS . . . D 3 12.375 -16.99 -0.909 1 44.65 0 H13 DMS 402 A 1 HETATM 8 H H21 DMS . . . D 3 13.342 -19.019 1.189 1 46.49 0 H21 DMS 402 A 1 HETATM 9 H H22 DMS . . . D 3 13.249 -19.203 -0.374 1 46.32 0 H22 DMS 402 A 1 HETATM 10 H H23 DMS . . . D 3 12.614 -20.281 0.589 1 46.39 0 H23 DMS 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #