data_8E25
#
_model_server_result.job_id            IoY6Qj4-mbEIBQKBNrI3bg 
_model_server_result.datetime_utc      '2024-11-16 10:54:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8E25 
#
_exptl.entry_id    8E25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E25 
_cell.length_a            67.859 
_cell.length_b            100.068 
_cell.length_c            103.533 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C3 4WI . A 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 F C3 4WI . B 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 154 n n 
S C1 DMS sing 155 n n 
S C2 DMS sing 156 n n 
C1 H11 DMS sing 157 n n 
C1 H12 DMS sing 158 n n 
C1 H13 DMS sing 159 n n 
C2 H21 DMS sing 160 n n 
C2 H22 DMS sing 161 n n 
C2 H23 DMS sing 162 n n 
#
_atom_sites.entry_id                     8E25 
_atom_sites.fract_transf_matrix[1][1]    0.014736 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009993 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009659 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4WI A 1 401 401 4WI DRG . 
D 3 DMS A 1 402 402 DMS DMS . 
E 3 DMS A 1 403 403 DMS DMS . 
F 2 4WI B 1 401 401 4WI DRG . 
G 3 DMS B 1 402 402 DMS DMS . 
H 4 HOH A 1 501 121 HOH HOH . 
H 4 HOH A 2 502 59 HOH HOH . 
H 4 HOH A 3 503 62 HOH HOH . 
H 4 HOH A 4 504 95 HOH HOH . 
H 4 HOH A 5 505 35 HOH HOH . 
H 4 HOH A 6 506 138 HOH HOH . 
H 4 HOH A 7 507 152 HOH HOH . 
H 4 HOH A 8 508 100 HOH HOH . 
H 4 HOH A 9 509 51 HOH HOH . 
H 4 HOH A 10 510 147 HOH HOH . 
H 4 HOH A 11 511 72 HOH HOH . 
H 4 HOH A 12 512 61 HOH HOH . 
H 4 HOH A 13 513 24 HOH HOH . 
H 4 HOH A 14 514 157 HOH HOH . 
H 4 HOH A 15 515 26 HOH HOH . 
H 4 HOH A 16 516 43 HOH HOH . 
H 4 HOH A 17 517 142 HOH HOH . 
H 4 HOH A 18 518 44 HOH HOH . 
H 4 HOH A 19 519 83 HOH HOH . 
H 4 HOH A 20 520 52 HOH HOH . 
H 4 HOH A 21 521 139 HOH HOH . 
H 4 HOH A 22 522 45 HOH HOH . 
H 4 HOH A 23 523 18 HOH HOH . 
H 4 HOH A 24 524 137 HOH HOH . 
H 4 HOH A 25 525 25 HOH HOH . 
H 4 HOH A 26 526 185 HOH HOH . 
H 4 HOH A 27 527 135 HOH HOH . 
H 4 HOH A 28 528 65 HOH HOH . 
H 4 HOH A 29 529 31 HOH HOH . 
H 4 HOH A 30 530 4 HOH HOH . 
H 4 HOH A 31 531 90 HOH HOH . 
H 4 HOH A 32 532 14 HOH HOH . 
H 4 HOH A 33 533 36 HOH HOH . 
H 4 HOH A 34 534 29 HOH HOH . 
H 4 HOH A 35 535 164 HOH HOH . 
H 4 HOH A 36 536 70 HOH HOH . 
H 4 HOH A 37 537 8 HOH HOH . 
H 4 HOH A 38 538 191 HOH HOH . 
H 4 HOH A 39 539 160 HOH HOH . 
H 4 HOH A 40 540 168 HOH HOH . 
H 4 HOH A 41 541 116 HOH HOH . 
H 4 HOH A 42 542 96 HOH HOH . 
H 4 HOH A 43 543 165 HOH HOH . 
H 4 HOH A 44 544 69 HOH HOH . 
H 4 HOH A 45 545 108 HOH HOH . 
H 4 HOH A 46 546 130 HOH HOH . 
H 4 HOH A 47 547 75 HOH HOH . 
H 4 HOH A 48 548 39 HOH HOH . 
H 4 HOH A 49 549 170 HOH HOH . 
H 4 HOH A 50 550 124 HOH HOH . 
H 4 HOH A 51 551 3 HOH HOH . 
H 4 HOH A 52 552 86 HOH HOH . 
H 4 HOH A 53 553 60 HOH HOH . 
H 4 HOH A 54 554 80 HOH HOH . 
H 4 HOH A 55 555 9 HOH HOH . 
H 4 HOH A 56 556 37 HOH HOH . 
H 4 HOH A 57 557 93 HOH HOH . 
H 4 HOH A 58 558 136 HOH HOH . 
H 4 HOH A 59 559 87 HOH HOH . 
H 4 HOH A 60 560 94 HOH HOH . 
H 4 HOH A 61 561 11 HOH HOH . 
H 4 HOH A 62 562 71 HOH HOH . 
H 4 HOH A 63 563 161 HOH HOH . 
H 4 HOH A 64 564 88 HOH HOH . 
H 4 HOH A 65 565 20 HOH HOH . 
H 4 HOH A 66 566 66 HOH HOH . 
H 4 HOH A 67 567 58 HOH HOH . 
H 4 HOH A 68 568 33 HOH HOH . 
H 4 HOH A 69 569 154 HOH HOH . 
H 4 HOH A 70 570 158 HOH HOH . 
H 4 HOH A 71 571 32 HOH HOH . 
H 4 HOH A 72 572 98 HOH HOH . 
H 4 HOH A 73 573 76 HOH HOH . 
H 4 HOH A 74 574 46 HOH HOH . 
H 4 HOH A 75 575 113 HOH HOH . 
H 4 HOH A 76 576 41 HOH HOH . 
H 4 HOH A 77 577 15 HOH HOH . 
H 4 HOH A 78 578 178 HOH HOH . 
H 4 HOH A 79 579 133 HOH HOH . 
H 4 HOH A 80 580 10 HOH HOH . 
H 4 HOH A 81 581 201 HOH HOH . 
H 4 HOH A 82 582 47 HOH HOH . 
H 4 HOH A 83 583 163 HOH HOH . 
H 4 HOH A 84 584 148 HOH HOH . 
H 4 HOH A 85 585 145 HOH HOH . 
H 4 HOH A 86 586 155 HOH HOH . 
H 4 HOH A 87 587 166 HOH HOH . 
H 4 HOH A 88 588 19 HOH HOH . 
H 4 HOH A 89 589 107 HOH HOH . 
H 4 HOH A 90 590 184 HOH HOH . 
H 4 HOH A 91 591 49 HOH HOH . 
H 4 HOH A 92 592 13 HOH HOH . 
H 4 HOH A 93 593 81 HOH HOH . 
H 4 HOH A 94 594 188 HOH HOH . 
H 4 HOH A 95 595 193 HOH HOH . 
H 4 HOH A 96 596 105 HOH HOH . 
H 4 HOH A 97 597 77 HOH HOH . 
H 4 HOH A 98 598 141 HOH HOH . 
H 4 HOH A 99 599 40 HOH HOH . 
H 4 HOH A 100 600 38 HOH HOH . 
H 4 HOH A 101 601 111 HOH HOH . 
H 4 HOH A 102 602 180 HOH HOH . 
H 4 HOH A 103 603 78 HOH HOH . 
H 4 HOH A 104 604 97 HOH HOH . 
H 4 HOH A 105 605 101 HOH HOH . 
H 4 HOH A 106 606 198 HOH HOH . 
H 4 HOH A 107 607 171 HOH HOH . 
H 4 HOH A 108 608 187 HOH HOH . 
H 4 HOH A 109 609 192 HOH HOH . 
H 4 HOH A 110 610 122 HOH HOH . 
H 4 HOH A 111 611 195 HOH HOH . 
H 4 HOH A 112 612 103 HOH HOH . 
H 4 HOH A 113 613 149 HOH HOH . 
H 4 HOH A 114 614 196 HOH HOH . 
H 4 HOH A 115 615 27 HOH HOH . 
H 4 HOH A 116 616 174 HOH HOH . 
H 4 HOH A 117 617 172 HOH HOH . 
H 4 HOH A 118 618 48 HOH HOH . 
H 4 HOH A 119 619 144 HOH HOH . 
H 4 HOH A 120 620 91 HOH HOH . 
H 4 HOH A 121 621 128 HOH HOH . 
H 4 HOH A 122 622 173 HOH HOH . 
I 4 HOH B 1 501 53 HOH HOH . 
I 4 HOH B 2 502 156 HOH HOH . 
I 4 HOH B 3 503 175 HOH HOH . 
I 4 HOH B 4 504 79 HOH HOH . 
I 4 HOH B 5 505 134 HOH HOH . 
I 4 HOH B 6 506 92 HOH HOH . 
I 4 HOH B 7 507 120 HOH HOH . 
I 4 HOH B 8 508 5 HOH HOH . 
I 4 HOH B 9 509 129 HOH HOH . 
I 4 HOH B 10 510 21 HOH HOH . 
I 4 HOH B 11 511 115 HOH HOH . 
I 4 HOH B 12 512 6 HOH HOH . 
I 4 HOH B 13 513 63 HOH HOH . 
I 4 HOH B 14 514 167 HOH HOH . 
I 4 HOH B 15 515 82 HOH HOH . 
I 4 HOH B 16 516 28 HOH HOH . 
I 4 HOH B 17 517 7 HOH HOH . 
I 4 HOH B 18 518 146 HOH HOH . 
I 4 HOH B 19 519 57 HOH HOH . 
I 4 HOH B 20 520 102 HOH HOH . 
I 4 HOH B 21 521 89 HOH HOH . 
I 4 HOH B 22 522 202 HOH HOH . 
I 4 HOH B 23 523 114 HOH HOH . 
I 4 HOH B 24 524 64 HOH HOH . 
I 4 HOH B 25 525 50 HOH HOH . 
I 4 HOH B 26 526 197 HOH HOH . 
I 4 HOH B 27 527 16 HOH HOH . 
I 4 HOH B 28 528 34 HOH HOH . 
I 4 HOH B 29 529 56 HOH HOH . 
I 4 HOH B 30 530 151 HOH HOH . 
I 4 HOH B 31 531 42 HOH HOH . 
I 4 HOH B 32 532 169 HOH HOH . 
I 4 HOH B 33 533 67 HOH HOH . 
I 4 HOH B 34 534 123 HOH HOH . 
I 4 HOH B 35 535 30 HOH HOH . 
I 4 HOH B 36 536 55 HOH HOH . 
I 4 HOH B 37 537 106 HOH HOH . 
I 4 HOH B 38 538 182 HOH HOH . 
I 4 HOH B 39 539 12 HOH HOH . 
I 4 HOH B 40 540 22 HOH HOH . 
I 4 HOH B 41 541 119 HOH HOH . 
I 4 HOH B 42 542 54 HOH HOH . 
I 4 HOH B 43 543 186 HOH HOH . 
I 4 HOH B 44 544 110 HOH HOH . 
I 4 HOH B 45 545 85 HOH HOH . 
I 4 HOH B 46 546 2 HOH HOH . 
I 4 HOH B 47 547 109 HOH HOH . 
I 4 HOH B 48 548 143 HOH HOH . 
I 4 HOH B 49 549 17 HOH HOH . 
I 4 HOH B 50 550 1 HOH HOH . 
I 4 HOH B 51 551 199 HOH HOH . 
I 4 HOH B 52 552 181 HOH HOH . 
I 4 HOH B 53 553 159 HOH HOH . 
I 4 HOH B 54 554 200 HOH HOH . 
I 4 HOH B 55 555 23 HOH HOH . 
I 4 HOH B 56 556 162 HOH HOH . 
I 4 HOH B 57 557 183 HOH HOH . 
I 4 HOH B 58 558 118 HOH HOH . 
I 4 HOH B 59 559 73 HOH HOH . 
I 4 HOH B 60 560 112 HOH HOH . 
I 4 HOH B 61 561 117 HOH HOH . 
I 4 HOH B 62 562 190 HOH HOH . 
I 4 HOH B 63 563 125 HOH HOH . 
I 4 HOH B 64 564 131 HOH HOH . 
I 4 HOH B 65 565 179 HOH HOH . 
I 4 HOH B 66 566 104 HOH HOH . 
I 4 HOH B 67 567 177 HOH HOH . 
I 4 HOH B 68 568 126 HOH HOH . 
I 4 HOH B 69 569 84 HOH HOH . 
I 4 HOH B 70 570 176 HOH HOH . 
I 4 HOH B 71 571 99 HOH HOH . 
I 4 HOH B 72 572 68 HOH HOH . 
I 4 HOH B 73 573 127 HOH HOH . 
I 4 HOH B 74 574 194 HOH HOH . 
I 4 HOH B 75 575 140 HOH HOH . 
I 4 HOH B 76 576 132 HOH HOH . 
I 4 HOH B 77 577 150 HOH HOH . 
I 4 HOH B 78 578 153 HOH HOH . 
I 4 HOH B 79 579 74 HOH HOH . 
I 4 HOH B 80 580 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 0.194 -10.842 18.419 1 58.07 0 S DMS 402 A 1 
HETATM 2 O O DMS . . . D 3 -0.237 -11.675 17.244 1 50.67 0 O DMS 402 A 1 
HETATM 3 C C1 DMS . . . D 3 1.917 -11.18 18.715 1 59.53 0 C1 DMS 402 A 1 
HETATM 4 C C2 DMS . . . D 3 -0.438 -11.601 19.887 1 57.4 0 C2 DMS 402 A 1 
HETATM 5 H H11 DMS . . . D 3 2.223 -10.648 19.462 1 59.09 0 H11 DMS 402 A 1 
HETATM 6 H H12 DMS . . . D 3 2.429 -10.954 17.926 1 59.09 0 H12 DMS 402 A 1 
HETATM 7 H H13 DMS . . . D 3 2.032 -12.116 18.918 1 59.11 0 H13 DMS 402 A 1 
HETATM 8 H H21 DMS . . . D 3 -0.155 -11.092 20.659 1 57.52 0 H21 DMS 402 A 1 
HETATM 9 H H22 DMS . . . D 3 -0.101 -12.506 19.954 1 57.53 0 H22 DMS 402 A 1 
HETATM 10 H H23 DMS . . . D 3 -1.402 -11.616 19.849 1 57.28 0 H23 DMS 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#