data_8E26 # _model_server_result.job_id WFaM7UQt5552x96j36BQsQ _model_server_result.datetime_utc '2024-11-16 08:33:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e26 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8E26 # _exptl.entry_id 8E26 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8E26 _cell.length_a 67.841 _cell.length_b 100.619 _cell.length_c 103.356 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E26 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C3 4WI . A 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C3 4WI . B 4WI 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 154 n n S C1 DMS sing 155 n n S C2 DMS sing 156 n n C1 H11 DMS sing 157 n n C1 H12 DMS sing 158 n n C1 H13 DMS sing 159 n n C2 H21 DMS sing 160 n n C2 H22 DMS sing 161 n n C2 H23 DMS sing 162 n n # _atom_sites.entry_id 8E26 _atom_sites.fract_transf_matrix[1][1] 0.01474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009675 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4WI A 1 401 401 4WI DRG . D 2 4WI B 1 401 401 4WI DRG . E 3 DMS B 1 402 402 DMS DMS . F 3 DMS B 1 403 403 DMS DMS . G 4 HOH A 1 501 132 HOH HOH . G 4 HOH A 2 502 26 HOH HOH . G 4 HOH A 3 503 59 HOH HOH . G 4 HOH A 4 504 50 HOH HOH . G 4 HOH A 5 505 24 HOH HOH . G 4 HOH A 6 506 138 HOH HOH . G 4 HOH A 7 507 88 HOH HOH . G 4 HOH A 8 508 80 HOH HOH . G 4 HOH A 9 509 93 HOH HOH . G 4 HOH A 10 510 70 HOH HOH . G 4 HOH A 11 511 4 HOH HOH . G 4 HOH A 12 512 82 HOH HOH . G 4 HOH A 13 513 127 HOH HOH . G 4 HOH A 14 514 136 HOH HOH . G 4 HOH A 15 515 148 HOH HOH . G 4 HOH A 16 516 21 HOH HOH . G 4 HOH A 17 517 54 HOH HOH . G 4 HOH A 18 518 64 HOH HOH . G 4 HOH A 19 519 39 HOH HOH . G 4 HOH A 20 520 75 HOH HOH . G 4 HOH A 21 521 150 HOH HOH . G 4 HOH A 22 522 28 HOH HOH . G 4 HOH A 23 523 32 HOH HOH . G 4 HOH A 24 524 165 HOH HOH . G 4 HOH A 25 525 47 HOH HOH . G 4 HOH A 26 526 61 HOH HOH . G 4 HOH A 27 527 83 HOH HOH . G 4 HOH A 28 528 159 HOH HOH . G 4 HOH A 29 529 213 HOH HOH . G 4 HOH A 30 530 184 HOH HOH . G 4 HOH A 31 531 126 HOH HOH . G 4 HOH A 32 532 189 HOH HOH . G 4 HOH A 33 533 45 HOH HOH . G 4 HOH A 34 534 123 HOH HOH . G 4 HOH A 35 535 102 HOH HOH . G 4 HOH A 36 536 16 HOH HOH . G 4 HOH A 37 537 38 HOH HOH . G 4 HOH A 38 538 58 HOH HOH . G 4 HOH A 39 539 151 HOH HOH . G 4 HOH A 40 540 210 HOH HOH . G 4 HOH A 41 541 128 HOH HOH . G 4 HOH A 42 542 62 HOH HOH . G 4 HOH A 43 543 10 HOH HOH . G 4 HOH A 44 544 140 HOH HOH . G 4 HOH A 45 545 191 HOH HOH . G 4 HOH A 46 546 53 HOH HOH . G 4 HOH A 47 547 57 HOH HOH . G 4 HOH A 48 548 17 HOH HOH . G 4 HOH A 49 549 29 HOH HOH . G 4 HOH A 50 550 65 HOH HOH . G 4 HOH A 51 551 173 HOH HOH . G 4 HOH A 52 552 177 HOH HOH . G 4 HOH A 53 553 41 HOH HOH . G 4 HOH A 54 554 55 HOH HOH . G 4 HOH A 55 555 115 HOH HOH . G 4 HOH A 56 556 7 HOH HOH . G 4 HOH A 57 557 84 HOH HOH . G 4 HOH A 58 558 130 HOH HOH . G 4 HOH A 59 559 87 HOH HOH . G 4 HOH A 60 560 30 HOH HOH . G 4 HOH A 61 561 34 HOH HOH . G 4 HOH A 62 562 85 HOH HOH . G 4 HOH A 63 563 118 HOH HOH . G 4 HOH A 64 564 145 HOH HOH . G 4 HOH A 65 565 13 HOH HOH . G 4 HOH A 66 566 27 HOH HOH . G 4 HOH A 67 567 212 HOH HOH . G 4 HOH A 68 568 25 HOH HOH . G 4 HOH A 69 569 68 HOH HOH . G 4 HOH A 70 570 6 HOH HOH . G 4 HOH A 71 571 157 HOH HOH . G 4 HOH A 72 572 18 HOH HOH . G 4 HOH A 73 573 71 HOH HOH . G 4 HOH A 74 574 134 HOH HOH . G 4 HOH A 75 575 12 HOH HOH . G 4 HOH A 76 576 19 HOH HOH . G 4 HOH A 77 577 40 HOH HOH . G 4 HOH A 78 578 49 HOH HOH . G 4 HOH A 79 579 76 HOH HOH . G 4 HOH A 80 580 14 HOH HOH . G 4 HOH A 81 581 142 HOH HOH . G 4 HOH A 82 582 125 HOH HOH . G 4 HOH A 83 583 8 HOH HOH . G 4 HOH A 84 584 120 HOH HOH . G 4 HOH A 85 585 149 HOH HOH . G 4 HOH A 86 586 219 HOH HOH . G 4 HOH A 87 587 209 HOH HOH . G 4 HOH A 88 588 101 HOH HOH . G 4 HOH A 89 589 95 HOH HOH . G 4 HOH A 90 590 5 HOH HOH . G 4 HOH A 91 591 109 HOH HOH . G 4 HOH A 92 592 158 HOH HOH . G 4 HOH A 93 593 22 HOH HOH . G 4 HOH A 94 594 2 HOH HOH . G 4 HOH A 95 595 107 HOH HOH . G 4 HOH A 96 596 200 HOH HOH . G 4 HOH A 97 597 211 HOH HOH . G 4 HOH A 98 598 9 HOH HOH . G 4 HOH A 99 599 170 HOH HOH . G 4 HOH A 100 600 172 HOH HOH . G 4 HOH A 101 601 163 HOH HOH . G 4 HOH A 102 602 23 HOH HOH . G 4 HOH A 103 603 214 HOH HOH . G 4 HOH A 104 604 98 HOH HOH . G 4 HOH A 105 605 152 HOH HOH . G 4 HOH A 106 606 106 HOH HOH . G 4 HOH A 107 607 207 HOH HOH . G 4 HOH A 108 608 77 HOH HOH . G 4 HOH A 109 609 116 HOH HOH . G 4 HOH A 110 610 206 HOH HOH . G 4 HOH A 111 611 178 HOH HOH . G 4 HOH A 112 612 52 HOH HOH . G 4 HOH A 113 613 181 HOH HOH . G 4 HOH A 114 614 204 HOH HOH . G 4 HOH A 115 615 198 HOH HOH . G 4 HOH A 116 616 215 HOH HOH . G 4 HOH A 117 617 143 HOH HOH . G 4 HOH A 118 618 220 HOH HOH . G 4 HOH A 119 619 139 HOH HOH . G 4 HOH A 120 620 175 HOH HOH . G 4 HOH A 121 621 205 HOH HOH . G 4 HOH A 122 622 92 HOH HOH . G 4 HOH A 123 623 104 HOH HOH . G 4 HOH A 124 624 208 HOH HOH . G 4 HOH A 125 625 171 HOH HOH . G 4 HOH A 126 626 121 HOH HOH . G 4 HOH A 127 627 99 HOH HOH . G 4 HOH A 128 628 117 HOH HOH . G 4 HOH A 129 629 131 HOH HOH . G 4 HOH A 130 630 147 HOH HOH . G 4 HOH A 131 631 217 HOH HOH . G 4 HOH A 132 632 168 HOH HOH . G 4 HOH A 133 633 74 HOH HOH . G 4 HOH A 134 634 194 HOH HOH . G 4 HOH A 135 635 186 HOH HOH . G 4 HOH A 136 636 190 HOH HOH . G 4 HOH A 137 637 192 HOH HOH . H 4 HOH B 1 501 146 HOH HOH . H 4 HOH B 2 502 33 HOH HOH . H 4 HOH B 3 503 73 HOH HOH . H 4 HOH B 4 504 72 HOH HOH . H 4 HOH B 5 505 44 HOH HOH . H 4 HOH B 6 506 124 HOH HOH . H 4 HOH B 7 507 122 HOH HOH . H 4 HOH B 8 508 90 HOH HOH . H 4 HOH B 9 509 67 HOH HOH . H 4 HOH B 10 510 63 HOH HOH . H 4 HOH B 11 511 162 HOH HOH . H 4 HOH B 12 512 193 HOH HOH . H 4 HOH B 13 513 185 HOH HOH . H 4 HOH B 14 514 97 HOH HOH . H 4 HOH B 15 515 3 HOH HOH . H 4 HOH B 16 516 108 HOH HOH . H 4 HOH B 17 517 195 HOH HOH . H 4 HOH B 18 518 153 HOH HOH . H 4 HOH B 19 519 100 HOH HOH . H 4 HOH B 20 520 51 HOH HOH . H 4 HOH B 21 521 60 HOH HOH . H 4 HOH B 22 522 35 HOH HOH . H 4 HOH B 23 523 31 HOH HOH . H 4 HOH B 24 524 180 HOH HOH . H 4 HOH B 25 525 43 HOH HOH . H 4 HOH B 26 526 167 HOH HOH . H 4 HOH B 27 527 221 HOH HOH . H 4 HOH B 28 528 86 HOH HOH . H 4 HOH B 29 529 182 HOH HOH . H 4 HOH B 30 530 66 HOH HOH . H 4 HOH B 31 531 110 HOH HOH . H 4 HOH B 32 532 183 HOH HOH . H 4 HOH B 33 533 114 HOH HOH . H 4 HOH B 34 534 42 HOH HOH . H 4 HOH B 35 535 113 HOH HOH . H 4 HOH B 36 536 46 HOH HOH . H 4 HOH B 37 537 129 HOH HOH . H 4 HOH B 38 538 103 HOH HOH . H 4 HOH B 39 539 119 HOH HOH . H 4 HOH B 40 540 48 HOH HOH . H 4 HOH B 41 541 36 HOH HOH . H 4 HOH B 42 542 160 HOH HOH . H 4 HOH B 43 543 105 HOH HOH . H 4 HOH B 44 544 96 HOH HOH . H 4 HOH B 45 545 89 HOH HOH . H 4 HOH B 46 546 78 HOH HOH . H 4 HOH B 47 547 15 HOH HOH . H 4 HOH B 48 548 37 HOH HOH . H 4 HOH B 49 549 137 HOH HOH . H 4 HOH B 50 550 112 HOH HOH . H 4 HOH B 51 551 187 HOH HOH . H 4 HOH B 52 552 166 HOH HOH . H 4 HOH B 53 553 169 HOH HOH . H 4 HOH B 54 554 111 HOH HOH . H 4 HOH B 55 555 154 HOH HOH . H 4 HOH B 56 556 91 HOH HOH . H 4 HOH B 57 557 20 HOH HOH . H 4 HOH B 58 558 1 HOH HOH . H 4 HOH B 59 559 155 HOH HOH . H 4 HOH B 60 560 202 HOH HOH . H 4 HOH B 61 561 94 HOH HOH . H 4 HOH B 62 562 201 HOH HOH . H 4 HOH B 63 563 216 HOH HOH . H 4 HOH B 64 564 79 HOH HOH . H 4 HOH B 65 565 179 HOH HOH . H 4 HOH B 66 566 56 HOH HOH . H 4 HOH B 67 567 164 HOH HOH . H 4 HOH B 68 568 141 HOH HOH . H 4 HOH B 69 569 196 HOH HOH . H 4 HOH B 70 570 188 HOH HOH . H 4 HOH B 71 571 69 HOH HOH . H 4 HOH B 72 572 218 HOH HOH . H 4 HOH B 73 573 174 HOH HOH . H 4 HOH B 74 574 161 HOH HOH . H 4 HOH B 75 575 203 HOH HOH . H 4 HOH B 76 576 199 HOH HOH . H 4 HOH B 77 577 144 HOH HOH . H 4 HOH B 78 578 197 HOH HOH . H 4 HOH B 79 579 176 HOH HOH . H 4 HOH B 80 580 135 HOH HOH . H 4 HOH B 81 581 81 HOH HOH . H 4 HOH B 82 582 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 3 -6.853 3.757 10.891 1 28.79 0 S DMS 402 B 1 HETATM 2 O O DMS . . . E 3 -5.386 3.427 10.991 1 27.03 0 O DMS 402 B 1 HETATM 3 C C1 DMS . . . E 3 -7.213 4.926 12.18 1 28.09 0 C1 DMS 402 B 1 HETATM 4 C C2 DMS . . . E 3 -7.765 2.35 11.504 1 26.81 0 C2 DMS 402 B 1 HETATM 5 H H11 DMS . . . E 3 -8.15 5.162 12.146 1 28.11 0 H11 DMS 402 B 1 HETATM 6 H H12 DMS . . . E 3 -6.675 5.718 12.053 1 28.06 0 H12 DMS 402 B 1 HETATM 7 H H13 DMS . . . E 3 -7.011 4.529 13.038 1 28.06 0 H13 DMS 402 B 1 HETATM 8 H H21 DMS . . . E 3 -8.712 2.537 11.453 1 27.12 0 H21 DMS 402 B 1 HETATM 9 H H22 DMS . . . E 3 -7.519 2.183 12.425 1 27.17 0 H22 DMS 402 B 1 HETATM 10 H H23 DMS . . . E 3 -7.559 1.572 10.968 1 27.17 0 H23 DMS 402 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 10 #