data_8E3G # _model_server_result.job_id P5CEeM74jN7SsZ6xJstgkQ _model_server_result.datetime_utc '2024-10-25 20:30:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8e3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8E3G # _exptl.entry_id 8E3G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8E3G _cell.length_a 98.321 _cell.length_b 98.321 _cell.length_c 174.783 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8E3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 A SG CYS 79 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 43 A CYS 43 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? disulf ? disulf3 A SG CYS 47 A CYS 47 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? disulf ? disulf4 A SG CYS 78 A CYS 78 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf5 B SG CYS 19 B CYS 19 1_555 B SG CYS 85 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf6 B SG CYS 48 B CYS 48 1_555 B SG CYS 117 B CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf7 B SG CYS 52 B CYS 52 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf8 C SG CYS 14 C CYS 14 1_555 C SG CYS 79 C CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf9 C SG CYS 43 C CYS 43 1_555 C SG CYS 111 C CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf10 C SG CYS 47 C CYS 47 1_555 C SG CYS 113 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf11 C SG CYS 78 C CYS 78 1_555 D SG CYS 84 D CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf12 D SG CYS 19 D CYS 19 1_555 D SG CYS 85 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 D SG CYS 48 D CYS 48 1_555 D SG CYS 117 D CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf14 D SG CYS 52 D CYS 52 1_555 D SG CYS 119 D CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8E3G _atom_sites.fract_transf_matrix[1][1] 0.010171 _atom_sites.fract_transf_matrix[1][2] 0.005872 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 201 201 GOL GOL . F 3 GOL B 1 201 201 GOL GOL . G 3 GOL C 1 201 201 GOL GOL . H 3 GOL D 1 201 201 GOL GOL . I 3 GOL D 1 202 202 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 54.817 -36.066 -48.273 1 59.12 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . E 3 55.754 -34.951 -48.011 1 54.22 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . E 3 55.291 -36.951 -49.513 1 64.69 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . E 3 55.038 -38.347 -49.28 1 61.82 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . E 3 54.501 -36.434 -50.804 1 56.57 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . E 3 55.303 -36.779 -52.014 1 64.37 ? O3 GOL 201 A 1 HETATM 7 H H11 GOL . . . E 3 53.922 -35.744 -48.46 1 70.8 ? H11 GOL 201 A 1 HETATM 8 H H12 GOL . . . E 3 54.734 -36.651 -47.503 1 70.8 ? H12 GOL 201 A 1 HETATM 9 H HO1 GOL . . . E 3 55.75 -34.473 -48.713 1 64.93 ? HO1 GOL 201 A 1 HETATM 10 H H2 GOL . . . E 3 56.245 -36.83 -49.641 1 77.49 ? H2 GOL 201 A 1 HETATM 11 H HO2 GOL . . . E 3 54.31 -38.396 -48.826 1 74.04 ? HO2 GOL 201 A 1 HETATM 12 H H31 GOL . . . E 3 54.347 -35.481 -50.708 1 67.74 ? H31 GOL 201 A 1 HETATM 13 H H32 GOL . . . E 3 53.618 -36.836 -50.805 1 67.74 ? H32 GOL 201 A 1 HETATM 14 H HO3 GOL . . . E 3 55.676 -37.528 -51.857 1 77.1 ? HO3 GOL 201 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #