data_8E3J
#
_model_server_result.job_id            3KBKczH6kt7Rb5z9Ls5e7g 
_model_server_result.datetime_utc      '2024-11-15 07:12:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8e3j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":901}' 
#
_entry.id    8E3J 
#
_exptl.entry_id    8E3J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8E3J 
_cell.length_a            135.207 
_cell.length_b            179.208 
_cell.length_c            180.59 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8E3J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,X 1 1 
B,M,N,O,P,Q,R,S,T,U,V,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
covale ? covale1 B ND2 ASN 47 B ASN 45 1_555 M C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8E3J 
_atom_sites.fract_transf_matrix[1][1]    0.007396 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1101 1101 GOL GOL . 
D 3 UGO A 1 1102 1201 UGO LIG . 
E 4 SO4 A 1 1103 1 SO4 SO4 . 
F 4 SO4 A 1 1104 5 SO4 SO4 . 
G 4 SO4 A 1 1105 7 SO4 SO4 . 
H 4 SO4 A 1 1106 8 SO4 SO4 . 
I 4 SO4 A 1 1107 9 SO4 SO4 . 
J 4 SO4 A 1 1108 10 SO4 SO4 . 
K 4 SO4 A 1 1109 11 SO4 SO4 . 
L 4 SO4 A 1 1110 12 SO4 SO4 . 
M 5 NAG B 1 901 1001 NAG NAG . 
N 2 GOL B 1 902 1101 GOL GOL . 
O 2 GOL B 1 903 1201 GOL GOL . 
P 2 GOL B 1 904 1301 GOL GOL . 
Q 2 GOL B 1 905 1401 GOL GOL . 
R 3 UGO B 1 906 1501 UGO LIG . 
S 4 SO4 B 1 907 2 SO4 SO4 . 
T 4 SO4 B 1 908 3 SO4 SO4 . 
U 4 SO4 B 1 909 4 SO4 SO4 . 
V 4 SO4 B 1 910 6 SO4 SO4 . 
W 4 SO4 B 1 911 13 SO4 SO4 . 
X 6 HOH A 1 1201 16 HOH HOH . 
X 6 HOH A 2 1202 19 HOH HOH . 
X 6 HOH A 3 1203 21 HOH HOH . 
X 6 HOH A 4 1204 10 HOH HOH . 
X 6 HOH A 5 1205 12 HOH HOH . 
X 6 HOH A 6 1206 17 HOH HOH . 
X 6 HOH A 7 1207 20 HOH HOH . 
X 6 HOH A 8 1208 8 HOH HOH . 
X 6 HOH A 9 1209 2 HOH HOH . 
X 6 HOH A 10 1210 18 HOH HOH . 
Y 6 HOH B 1 1001 6 HOH HOH . 
Y 6 HOH B 2 1002 8 HOH HOH . 
Y 6 HOH B 3 1003 23 HOH HOH . 
Y 6 HOH B 4 1004 25 HOH HOH . 
Y 6 HOH B 5 1005 8 HOH HOH . 
Y 6 HOH B 6 1006 3 HOH HOH . 
Y 6 HOH B 7 1007 4 HOH HOH . 
Y 6 HOH B 8 1008 1 HOH HOH . 
Y 6 HOH B 9 1009 11 HOH HOH . 
Y 6 HOH B 10 1010 14 HOH HOH . 
Y 6 HOH B 11 1011 13 HOH HOH . 
Y 6 HOH B 12 1012 45 HOH HOH . 
Y 6 HOH B 13 1013 82 HOH HOH . 
Y 6 HOH B 14 1014 22 HOH HOH . 
Y 6 HOH B 15 1015 9 HOH HOH . 
Y 6 HOH B 16 1016 7 HOH HOH . 
Y 6 HOH B 17 1017 5 HOH HOH . 
Y 6 HOH B 18 1018 24 HOH HOH . 
Y 6 HOH B 19 1019 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . M 5 -32.238 -51.203 -18.194 1 81.42 ? C1 NAG 901 B 1 
HETATM 2 C C2 NAG . . . M 5 -31.555 -51.617 -19.528 1 84.59 ? C2 NAG 901 B 1 
HETATM 3 C C3 NAG . . . M 5 -32.555 -51.934 -20.656 1 82.67 ? C3 NAG 901 B 1 
HETATM 4 C C4 NAG . . . M 5 -33.855 -52.655 -20.242 1 86.91 ? C4 NAG 901 B 1 
HETATM 5 C C5 NAG . . . M 5 -34.442 -51.925 -19.005 1 88.97 ? C5 NAG 901 B 1 
HETATM 6 C C6 NAG . . . M 5 -35.789 -52.508 -18.52 1 92.59 ? C6 NAG 901 B 1 
HETATM 7 C C7 NAG . . . M 5 -29.337 -50.573 -20.258 1 74.73 ? C7 NAG 901 B 1 
HETATM 8 C C8 NAG . . . M 5 -28.741 -49.42 -21.019 1 67.18 ? C8 NAG 901 B 1 
HETATM 9 N N2 NAG . . . M 5 -30.682 -50.573 -20.113 1 84.95 ? N2 NAG 901 B 1 
HETATM 10 O O3 NAG . . . M 5 -31.805 -52.712 -21.577 1 82.38 ? O3 NAG 901 B 1 
HETATM 11 O O4 NAG . . . M 5 -34.786 -52.775 -21.363 1 65.2 ? O4 NAG 901 B 1 
HETATM 12 O O5 NAG . . . M 5 -33.48 -51.893 -17.924 1 73.36 ? O5 NAG 901 B 1 
HETATM 13 O O6 NAG . . . M 5 -35.746 -53.926 -18.271 1 84.49 ? O6 NAG 901 B 1 
HETATM 14 O O7 NAG . . . M 5 -28.605 -51.435 -19.819 1 76.33 ? O7 NAG 901 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#